Strain Fitness in Pantoea sp. MT58 around IAI47_08940

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,889,582	-				+1.5
1,889,599	-				+0.0
1,889,618	+				+0.6
1,889,618	+				-0.2
1,889,618	+				-3.0
1,889,618	+				+0.0
1,889,619	-				+0.2
1,889,619	-				-1.6
1,889,619	-				+0.8
1,889,619	-				+0.8
1,889,631	-				+1.9
1,889,661	+				-0.4
1,889,661	+				+1.8
1,889,661	+				+0.2
1,889,661	+				-0.7
1,889,661	+				-0.9
1,889,661	+				-1.1
1,889,662	-				-1.2
1,889,662	-				-1.1
1,889,662	-				-1.1
1,889,662	-				-0.4
1,889,662	-				-0.4
1,889,679	+				-0.7
1,889,725	+				+0.6
1,889,725	+				+0.6
1,889,774	+				-2.0
1,889,774	+				-1.0
1,889,774	+				-1.7
1,889,774	+				-0.7
1,889,774	+				-2.0
1,889,775	-				+1.2
1,889,775	-				+1.6
1,889,775	-				-1.9
1,889,940	+		IAI47_08935	0.27	-0.1
1,889,940	+		IAI47_08935	0.27	+0.4
1,889,941	-		IAI47_08935	0.27	+0.7
1,889,951	+		IAI47_08935	0.28	+0.8
1,889,951	+		IAI47_08935	0.28	-1.7
1,889,980	+		IAI47_08935	0.32	-0.7
1,889,980	+		IAI47_08935	0.32	+1.7
1,889,980	+		IAI47_08935	0.32	-0.3
1,889,980	+		IAI47_08935	0.32	+0.3
1,889,981	-		IAI47_08935	0.32	-1.6
1,889,981	-		IAI47_08935	0.32	-1.3
1,889,981	-		IAI47_08935	0.32	+0.5
1,889,981	-		IAI47_08935	0.32	+2.6
1,890,023	+		IAI47_08935	0.37	+2.7
1,890,023	+		IAI47_08935	0.37	-0.0
1,890,035	+		IAI47_08935	0.38	+0.8
1,890,035	+		IAI47_08935	0.38	+1.5
1,890,036	-		IAI47_08935	0.38	+0.8
1,890,036	-		IAI47_08935	0.38	+3.4
1,890,036	-		IAI47_08935	0.38	+0.1
1,890,036	-		IAI47_08935	0.38	+2.8
1,890,056	-		IAI47_08935	0.40	-1.9
1,890,151	+		IAI47_08935	0.52	-0.4
1,890,152	-		IAI47_08935	0.52	-1.2
1,890,190	+		IAI47_08935	0.56	+2.3
1,890,209	+		IAI47_08935	0.58	+0.5
1,890,209	+		IAI47_08935	0.58	+0.4
1,890,209	+		IAI47_08935	0.58	+0.9
1,890,284	+		IAI47_08935	0.67	+1.3
1,890,284	+		IAI47_08935	0.67	-0.2
1,890,284	+		IAI47_08935	0.67	+1.8
1,890,284	+		IAI47_08935	0.67	+0.6
1,890,284	+		IAI47_08935	0.67	+2.0
1,890,285	-		IAI47_08935	0.67	-0.5
1,890,285	-		IAI47_08935	0.67	-0.3
1,890,328	+		IAI47_08935	0.72	-0.7
1,890,538	+				+0.7
1,890,538	+				+0.6
1,890,538	+				-0.4
1,890,538	+				+0.0
1,890,538	+				-1.0
1,890,538	+				-1.9
1,890,538	+				-0.7
1,890,538	+				+1.4
1,890,539	-				+2.3
1,890,539	-				-1.2
1,890,539	-				-1.0
1,890,539	-				+1.5
1,890,539	-				-0.5
1,890,539	-				-1.0
1,890,539	-				-0.8
1,890,539	-				-1.2
1,890,539	-				-1.3
1,890,539	-				-1.2
1,890,539	-				+1.0
1,890,654	+		IAI47_08940	0.11	-0.6
1,890,655	-		IAI47_08940	0.11	-0.2
1,890,690	+		IAI47_08940	0.15	+0.8
1,890,690	+		IAI47_08940	0.15	-1.3
1,890,690	+		IAI47_08940	0.15	-0.7
1,890,691	-		IAI47_08940	0.15	-0.5
1,890,691	-		IAI47_08940	0.15	+1.2
1,890,691	-		IAI47_08940	0.15	-0.9
1,890,691	-		IAI47_08940	0.15	+0.3
1,890,691	-		IAI47_08940	0.15	-0.6
1,890,691	-		IAI47_08940	0.15	-0.4
1,890,692	+		IAI47_08940	0.15	-0.7
1,890,776	+		IAI47_08940	0.24	-1.4
1,890,804	+		IAI47_08940	0.27	+0.8
1,890,805	-		IAI47_08940	0.27	-1.4
1,890,805	-		IAI47_08940	0.27	+1.1
1,890,805	-		IAI47_08940	0.27	-2.0
1,890,843	+		IAI47_08940	0.32	+1.9
1,890,843	+		IAI47_08940	0.32	-2.0
1,890,844	-		IAI47_08940	0.32	-1.2
1,890,844	-		IAI47_08940	0.32	+1.5
1,890,915	+		IAI47_08940	0.40	-0.1
1,890,915	+		IAI47_08940	0.40	-1.0
1,890,921	+		IAI47_08940	0.40	-0.7
1,890,921	+		IAI47_08940	0.40	+0.3
1,890,922	-		IAI47_08940	0.40	+0.8
1,890,922	-		IAI47_08940	0.40	+1.2
1,890,971	+		IAI47_08940	0.46	+0.7
1,890,971	+		IAI47_08940	0.46	-0.4
1,890,971	+		IAI47_08940	0.46	+1.1
1,890,971	+		IAI47_08940	0.46	-1.6
1,890,971	+		IAI47_08940	0.46	+1.3
1,890,972	-		IAI47_08940	0.46	-0.5
1,890,972	-		IAI47_08940	0.46	-0.3
1,890,972	-		IAI47_08940	0.46	+1.1
1,890,972	-		IAI47_08940	0.46	-0.7
1,891,007	+		IAI47_08940	0.50	+1.6
1,891,007	+		IAI47_08940	0.50	-1.4
1,891,008	-		IAI47_08940	0.50	-1.6
1,891,063	-		IAI47_08940	0.56	-0.9
1,891,356	+		IAI47_08940	0.89	+1.8
1,891,357	-		IAI47_08940	0.89	+2.4
1,891,390	+				-0.7
1,891,390	+				+1.2
1,891,391	-				+0.6
1,891,409	+				-2.3
1,891,410	-				-0.4
1,891,425	+				+0.4
1,891,426	-				-1.0
1,891,440	+				-0.2
1,891,441	-				+0.0
1,891,441	-				+0.2
1,891,449	+				-0.6
1,891,449	+				+1.8
1,891,449	+				-1.2
1,891,449	+				-0.3
1,891,449	+				-0.7
1,891,449	+				+0.2
1,891,449	+				-0.2
1,891,449	+				+0.5
1,891,449	+				+1.0
1,891,450	-				+4.2
1,891,450	-				+2.0
1,891,450	-				+2.1
1,891,450	-				+0.6
1,891,450	-				-0.4
1,891,508	+				-0.7
1,891,533	+				+0.8
1,891,534	-				+0.9
1,891,534	-				-2.0
1,891,534	-				-0.7
1,891,534	-				+0.0
1,891,534	-				-1.0
1,891,534	-				+0.0
1,891,534	-				+0.9
1,891,534	-				+0.5