Strain Fitness in Pantoea sp. MT58 around IAI47_08690

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,837,085	+		IAI47_08685	0.66	+0.0
1,837,085	+		IAI47_08685	0.66	-2.1
1,837,085	+		IAI47_08685	0.66	+2.6
1,837,085	+		IAI47_08685	0.66	+0.4
1,837,086	-		IAI47_08685	0.66	-1.8
1,837,086	-		IAI47_08685	0.66	+0.0
1,837,086	-		IAI47_08685	0.66	-2.5
1,837,086	-		IAI47_08685	0.66	-0.2
1,837,086	-		IAI47_08685	0.66	+0.6
1,837,086	-		IAI47_08685	0.66	-0.0
1,837,086	-		IAI47_08685	0.66	-2.1
1,837,178	+		IAI47_08685	0.69	+1.9
1,837,281	+		IAI47_08685	0.73	+2.3
1,837,356	+		IAI47_08685	0.76	+0.6
1,837,357	-		IAI47_08685	0.76	+1.0
1,837,357	-		IAI47_08685	0.76	-0.4
1,837,375	+		IAI47_08685	0.77	-1.3
1,837,375	+		IAI47_08685	0.77	+0.0
1,837,401	+		IAI47_08685	0.78	+1.9
1,837,402	-		IAI47_08685	0.78	+0.6
1,837,402	-		IAI47_08685	0.78	+1.0
1,837,404	+		IAI47_08685	0.78	+1.8
1,837,404	+		IAI47_08685	0.78	-1.7
1,837,404	+		IAI47_08685	0.78	-0.4
1,837,405	-		IAI47_08685	0.78	-1.0
1,837,405	-		IAI47_08685	0.78	-0.4
1,837,405	-		IAI47_08685	0.78	-0.9
1,837,405	-		IAI47_08685	0.78	+0.4
1,837,415	+		IAI47_08685	0.78	+1.6
1,837,415	+		IAI47_08685	0.78	+0.0
1,837,416	-		IAI47_08685	0.78	+1.6
1,837,416	-		IAI47_08685	0.78	-2.6
1,837,416	-		IAI47_08685	0.78	+0.2
1,837,421	+		IAI47_08685	0.78	-1.7
1,837,421	+		IAI47_08685	0.78	+0.8
1,837,421	+		IAI47_08685	0.78	+0.0
1,837,421	+		IAI47_08685	0.78	+0.2
1,837,422	-		IAI47_08685	0.78	-0.4
1,837,422	-		IAI47_08685	0.78	+0.0
1,837,449	-		IAI47_08685	0.79	-1.2
1,837,451	+		IAI47_08685	0.80	-0.4
1,837,451	+		IAI47_08685	0.80	-1.4
1,837,452	-		IAI47_08685	0.80	-2.7
1,837,529	+		IAI47_08685	0.82	+1.3
1,837,529	+		IAI47_08685	0.82	+0.2
1,837,529	+		IAI47_08685	0.82	-0.1
1,837,530	-		IAI47_08685	0.83	+0.6
1,837,533	+		IAI47_08685	0.83	+1.7
1,837,534	-		IAI47_08685	0.83	+0.0
1,837,554	+		IAI47_08685	0.83	+1.6
1,837,573	-		IAI47_08685	0.84	+1.6
1,837,573	-		IAI47_08685	0.84	+1.8
1,837,598	+		IAI47_08685	0.85	+2.1
1,837,598	+		IAI47_08685	0.85	+1.6
1,837,598	+		IAI47_08685	0.85	+0.6
1,837,598	+		IAI47_08685	0.85	+0.3
1,837,598	+		IAI47_08685	0.85	+1.6
1,837,598	+		IAI47_08685	0.85	+1.6
1,837,598	+		IAI47_08685	0.85	-1.1
1,837,599	-		IAI47_08685	0.85	-1.7
1,837,599	-		IAI47_08685	0.85	-1.0
1,837,599	-		IAI47_08685	0.85	+0.8
1,837,599	-		IAI47_08685	0.85	-0.3
1,837,599	-		IAI47_08685	0.85	-0.4
1,837,599	-		IAI47_08685	0.85	+0.2
1,837,599	-		IAI47_08685	0.85	-2.4
1,837,599	-		IAI47_08685	0.85	+0.6
1,837,599	-		IAI47_08685	0.85	+1.8
1,837,599	-		IAI47_08685	0.85	-2.0
1,837,599	-		IAI47_08685	0.85	+0.6
1,837,599	-		IAI47_08685	0.85	+0.0
1,837,599	-		IAI47_08685	0.85	+0.7
1,837,599	-		IAI47_08685	0.85	-1.2
1,837,602	+		IAI47_08685	0.85	+2.0
1,837,603	-		IAI47_08685	0.85	+0.1
1,837,650	+		IAI47_08685	0.87	+0.2
1,837,650	+		IAI47_08685	0.87	-2.2
1,837,719	+		IAI47_08685	0.90	+0.9
1,837,720	-		IAI47_08685	0.90	-0.9
1,837,720	-		IAI47_08685	0.90	-0.8
1,837,752	+				+0.0
1,837,815	+				+2.2
1,837,816	-				-1.0
1,837,865	+				+1.6
1,837,865	+				-1.8
1,837,865	+				+0.9
1,837,866	-				+0.3
1,837,866	-				-1.0
1,837,866	-				-2.5
1,837,866	-				-1.0
1,837,866	-				+1.0
1,837,870	-				-1.0
1,837,870	-				+2.0
1,837,870	-				-2.3
1,837,870	-				-3.0
1,837,908	+				+1.6
1,837,908	+				-1.0
1,837,909	-				-1.6
1,837,936	-				-1.5
1,837,941	+				-1.8
1,837,941	+				+0.6
1,837,941	+				-0.4
1,837,942	-				-0.2
1,837,942	-				+1.0
1,837,942	-				-1.0
1,837,968	+				+0.2
1,837,968	+				-0.8
1,838,032	+				+0.6
1,838,032	+				-0.9
1,838,032	+				+0.8
1,838,032	+				-1.2
1,838,032	+				+0.9
1,838,032	+				+1.0
1,838,032	+				-0.6
1,838,032	+				-0.3
1,838,032	+				-0.7
1,838,032	+				-1.3
1,838,032	+				+0.0
1,838,032	+				+0.4
1,838,032	+				+0.0
1,838,032	+				+0.4
1,838,032	+				-0.6
1,838,032	+				+2.6
1,838,033	-				-2.1
1,838,033	-				+0.9
1,838,033	-				+1.6
1,838,033	-				-0.1
1,838,033	-				-0.6
1,838,033	-				-0.1
1,838,033	-				+1.6
1,838,033	-				+0.0
1,838,033	-				-0.4
1,838,033	-				-1.0
1,838,033	-				-1.2
1,838,033	-				+1.0
1,838,084	-		IAI47_08690	0.10	-1.5
1,838,180	+		IAI47_08690	0.18	-0.2
1,838,180	+		IAI47_08690	0.18	+1.4
1,838,181	-		IAI47_08690	0.18	+0.0
1,838,181	-		IAI47_08690	0.18	-0.2
1,838,181	-		IAI47_08690	0.18	-1.8
1,838,181	-		IAI47_08690	0.18	-1.8
1,838,228	-		IAI47_08690	0.22	+0.6
1,838,263	+		IAI47_08690	0.24	-0.7
1,838,274	-		IAI47_08690	0.25	-1.2
1,838,274	-		IAI47_08690	0.25	-1.2
1,838,278	+		IAI47_08690	0.26	+1.1
1,838,279	-		IAI47_08690	0.26	-1.4
1,838,279	-		IAI47_08690	0.26	-0.7
1,838,376	+		IAI47_08690	0.34	-0.1
1,838,377	-		IAI47_08690	0.34	-1.9
1,838,377	-		IAI47_08690	0.34	+0.2
1,838,486	-		IAI47_08690	0.42	-0.7
1,838,486	-		IAI47_08690	0.42	+1.1
1,838,519	+		IAI47_08690	0.45	+1.0
1,838,519	+		IAI47_08690	0.45	-0.7
1,838,569	+		IAI47_08690	0.49	-0.3
1,838,614	+		IAI47_08690	0.53	+1.3
1,838,614	+		IAI47_08690	0.53	+0.6
1,838,614	+		IAI47_08690	0.53	-0.7
1,838,615	-		IAI47_08690	0.53	-1.2
1,838,615	-		IAI47_08690	0.53	-1.2
1,838,661	+		IAI47_08690	0.56	+1.6
1,838,661	+		IAI47_08690	0.56	-1.8
1,838,661	+		IAI47_08690	0.56	-0.4
1,838,661	+		IAI47_08690	0.56	+1.0
1,838,662	-		IAI47_08690	0.57	-1.3
1,838,662	-		IAI47_08690	0.57	+0.6
1,838,662	-		IAI47_08690	0.57	+0.0
1,838,662	-		IAI47_08690	0.57	-1.0
1,838,662	-		IAI47_08690	0.57	+0.6
1,838,662	-		IAI47_08690	0.57	+0.8
1,838,662	-		IAI47_08690	0.57	-1.0
1,838,697	+		IAI47_08690	0.59	-1.6
1,838,697	+		IAI47_08690	0.59	-2.3
1,838,697	+		IAI47_08690	0.59	-1.2
1,838,710	+		IAI47_08690	0.60	-0.1
1,838,710	+		IAI47_08690	0.60	-1.2
1,838,710	+		IAI47_08690	0.60	-2.4
1,838,739	+		IAI47_08690	0.63	-2.0
1,838,739	+		IAI47_08690	0.63	-0.1
1,838,739	+		IAI47_08690	0.63	-2.2
1,838,739	+		IAI47_08690	0.63	-1.2
1,838,739	+		IAI47_08690	0.63	+1.2
1,838,739	+		IAI47_08690	0.63	-0.5
1,838,739	+		IAI47_08690	0.63	-1.0
1,838,739	+		IAI47_08690	0.63	-2.7
1,838,740	-		IAI47_08690	0.63	-1.3
1,838,740	-		IAI47_08690	0.63	+1.3
1,838,740	-		IAI47_08690	0.63	-1.6
1,838,740	-		IAI47_08690	0.63	-2.2
1,838,740	-		IAI47_08690	0.63	-0.5
1,838,740	-		IAI47_08690	0.63	-2.3
1,838,743	+		IAI47_08690	0.63	+1.9
1,838,743	+		IAI47_08690	0.63	-1.6
1,838,803	+		IAI47_08690	0.68	-1.0
1,838,804	-		IAI47_08690	0.68	+1.3
1,838,804	-		IAI47_08690	0.68	+1.8
1,838,829	+		IAI47_08690	0.70	+0.4
1,838,830	-		IAI47_08690	0.70	+1.1
1,838,830	-		IAI47_08690	0.70	-0.8
1,838,897	+		IAI47_08690	0.75	+0.0
1,838,897	+		IAI47_08690	0.75	-0.3
1,838,898	-		IAI47_08690	0.76	-0.1
1,838,898	-		IAI47_08690	0.76	+2.2
1,838,898	-		IAI47_08690	0.76	+0.4
1,838,898	-		IAI47_08690	0.76	+0.3
1,839,008	+		IAI47_08690	0.84	-0.7
1,839,008	+		IAI47_08690	0.84	-1.2
1,839,008	+		IAI47_08690	0.84	-2.1
1,839,009	-		IAI47_08690	0.84	-1.8
1,839,009	-		IAI47_08690	0.84	+0.2
1,839,009	-		IAI47_08690	0.84	+0.6
1,839,009	-		IAI47_08690	0.84	+0.6
1,839,009	-		IAI47_08690	0.84	-1.7
1,839,009	-		IAI47_08690	0.84	+0.9
1,839,009	-		IAI47_08690	0.84	+1.4
1,839,034	+		IAI47_08690	0.86	+1.6
1,839,034	+		IAI47_08690	0.86	+0.6
1,839,079	+				+0.8
1,839,080	-				-1.8
1,839,187	+				-0.4
1,839,187	+				-2.5
1,839,188	-				-0.7
1,839,232	+				-1.8
1,839,233	-				-1.0
1,839,233	-				-0.7
1,839,233	-				+1.4
1,839,233	-				-2.0
1,839,233	-				+2.9
1,839,233	-				-1.4
1,839,233	-				-1.4
1,839,239	+				+0.9
1,839,240	-				+0.4
1,839,249	+				+1.8
1,839,249	+				-0.7
1,839,250	-				-1.3
1,839,303	+				-1.4
1,839,303	+				-0.7
1,839,304	-				-0.8
1,839,304	-				+0.8
1,839,304	-				+0.9
1,839,304	-				-1.0
1,839,304	-				+1.3
1,839,309	+				-1.0
1,839,309	+				+0.6
1,839,309	+				+2.1
1,839,309	+				-2.0
1,839,310	-				+1.0
1,839,311	+				+0.9
1,839,311	+				-1.0
1,839,311	+				-1.4
1,839,311	+				-0.8
1,839,312	-				+0.7
1,839,312	-				+0.0
1,839,318	+				-0.5
1,839,318	+				+1.3
1,839,318	+				+1.7
1,839,318	+				+0.6
1,839,318	+				+0.7
1,839,319	-				-1.7
1,839,319	-				-0.4
1,839,319	-				+1.0
1,839,319	-				-1.0
1,839,319	-				+0.5
1,839,319	-				+0.6
1,839,319	-				-2.6
1,839,319	-				-2.1
1,839,319	-				+0.6
1,839,319	-				-0.1
1,839,324	+				+0.9
1,839,324	+				-1.6
1,839,324	+				+0.2
1,839,325	-				-1.6
1,839,348	+				+1.6
1,839,348	+				-0.7
1,839,353	-				-0.5
1,839,379	+				+1.3
1,839,380	-				+1.2
1,839,380	-				-0.4
1,839,380	-				+2.2
1,839,380	-				+2.3
1,839,380	-				+0.2
1,839,388	+				-0.3
1,839,388	+				+2.4
1,839,388	+				-2.1
1,839,389	-				+0.6
1,839,389	-				-2.5
1,839,389	-				-1.8
1,839,389	-				+2.2
1,839,389	-				-0.8
1,839,389	-				-1.0
1,839,403	+				+0.6
1,839,434	+				+2.3
1,839,434	+				-1.1
1,839,434	+				-1.0
1,839,434	+				-0.7
1,839,454	+				-0.4
1,839,455	-				-2.3
1,839,521	+		IAI47_08695	0.21	+1.4
1,839,521	+		IAI47_08695	0.21	+3.3
1,839,521	+		IAI47_08695	0.21	+1.7
1,839,521	+		IAI47_08695	0.21	-2.6
1,839,521	+		IAI47_08695	0.21	-1.6
1,839,521	+		IAI47_08695	0.21	+0.3
1,839,521	+		IAI47_08695	0.21	+0.6
1,839,521	+		IAI47_08695	0.21	-1.4
1,839,522	-		IAI47_08695	0.21	+0.6
1,839,522	-		IAI47_08695	0.21	+1.6
1,839,522	-		IAI47_08695	0.21	+0.9
1,839,522	-		IAI47_08695	0.21	-1.6
1,839,522	-		IAI47_08695	0.21	+0.9
1,839,522	-		IAI47_08695	0.21	+0.6
1,839,557	+		IAI47_08695	0.28	+1.8
1,839,557	+		IAI47_08695	0.28	+1.8
1,839,557	+		IAI47_08695	0.28	-0.2
1,839,558	-		IAI47_08695	0.28	+0.9
1,839,803	+		IAI47_08695	0.77	+0.8
1,839,803	+		IAI47_08695	0.77	-0.8
1,839,803	+		IAI47_08695	0.77	+0.0
1,839,803	+		IAI47_08695	0.77	-1.5
1,839,803	+		IAI47_08695	0.77	-2.6
1,839,803	+		IAI47_08695	0.77	-1.4
1,839,803	+		IAI47_08695	0.77	+1.0
1,839,803	+		IAI47_08695	0.77	-0.8
1,839,804	-		IAI47_08695	0.77	-1.0
1,839,804	-		IAI47_08695	0.77	-0.7
1,839,804	-		IAI47_08695	0.77	-0.9
1,839,804	-		IAI47_08695	0.77	-2.6
1,839,804	-		IAI47_08695	0.77	+0.6
1,839,804	-		IAI47_08695	0.77	-1.4
1,839,885	+				-0.2
1,839,893	+				-0.6
1,839,915	-				-2.4
1,839,938	+				+0.7
1,839,953	+				-2.5
1,839,953	+				+1.0
1,839,953	+				-2.3
1,839,954	-				-2.2
1,839,954	-				-0.8
1,839,954	-				-2.4
1,839,955	+				-0.7
1,839,955	+				+0.0
1,839,955	+				-1.2
1,839,955	+				+0.6
1,839,955	+				-1.4
1,839,955	+				+1.8
1,839,955	+				-3.1
1,839,956	-				-1.2
1,839,956	-				-0.4
1,839,956	-				+0.8
1,839,956	-				-1.2
1,839,998	+				-0.6
1,839,998	+				-0.3
1,839,998	+				+2.9
1,839,998	+				+0.0
1,840,027	+				-2.6
1,840,027	+				-2.2
1,840,027	+				+0.0
1,840,027	+				-2.0
1,840,036	+				+1.6
1,840,202	+		IAI47_08700	0.27	-0.2