Strain Fitness in Pantoea sp. MT58 around IAI47_08435

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,785,864	+				+0.5
1,785,864	+				-1.2
1,785,865	-				-1.4
1,785,872	+				+0.3
1,785,874	+				-0.2
1,785,874	+				-1.0
1,785,875	-				+1.1
1,785,901	+				+0.6
1,785,901	+				-1.4
1,785,902	-				+1.0
1,786,127	+		IAI47_08430	0.60	+0.5
1,786,127	+		IAI47_08430	0.60	-1.0
1,786,128	-		IAI47_08430	0.61	-0.4
1,786,147	+		IAI47_08430	0.65	-0.7
1,786,148	-		IAI47_08430	0.65	+0.8
1,786,251	+		IAI47_08430	0.89	-0.4
1,786,252	-		IAI47_08430	0.89	+1.2
1,786,252	-		IAI47_08430	0.89	-1.8
1,786,291	+				-1.4
1,786,292	-				+2.6
1,786,331	+				+0.0
1,786,332	-				+0.6
1,786,336	+				-2.3
1,786,337	-				+0.4
1,786,337	-				+1.6
1,786,362	-				-0.3
1,786,378	+				+1.8
1,786,378	+				-1.4
1,786,378	+				-2.3
1,786,378	+				-0.5
1,786,378	+				+0.9
1,786,378	+				-1.6
1,786,378	+				+0.8
1,786,378	+				+0.3
1,786,378	+				-1.7
1,786,379	-				-2.8
1,786,379	-				-1.0
1,786,380	+				-0.5
1,786,380	+				+1.3
1,786,380	+				-0.2
1,786,380	+				+0.8
1,786,380	+				-2.4
1,786,380	+				+0.0
1,786,380	+				+1.1
1,786,380	+				-0.7
1,786,381	-				-0.4
1,786,381	-				+0.2
1,786,402	+				-0.7
1,786,402	+				+1.6
1,786,419	+				+3.2
1,786,444	+				+1.7
1,786,444	+				+0.3
1,786,444	+				+0.8
1,786,444	+				+1.2
1,786,444	+				+0.9
1,786,444	+				-1.6
1,786,444	+				+1.4
1,786,445	-				+2.1
1,786,445	-				+3.8
1,786,452	+				+0.4
1,786,452	+				-0.1
1,786,452	+				-3.1
1,786,453	-				+1.6
1,786,501	+				+1.3
1,786,512	+				-1.4
1,786,512	+				+1.4
1,786,512	+				+1.6
1,786,512	+				+1.4
1,786,513	-				+0.6
1,786,560	+				+0.0
1,786,597	+				-3.2
1,786,597	+				-2.3
1,786,597	+				-1.0
1,786,597	+				-0.7
1,786,597	+				+2.0
1,786,639	+				-1.3
1,786,639	+				-1.4
1,786,639	+				-1.0
1,786,841	+		IAI47_08435	0.35	+0.6
1,786,841	+		IAI47_08435	0.35	-1.7
1,786,906	+		IAI47_08435	0.43	-1.9
1,786,976	+		IAI47_08435	0.53	-1.9
1,787,078	+		IAI47_08435	0.67	+0.0
1,787,078	+		IAI47_08435	0.67	+0.6
1,787,078	+		IAI47_08435	0.67	-2.0
1,787,078	+		IAI47_08435	0.67	+1.2
1,787,078	+		IAI47_08435	0.67	-2.8
1,787,282	+				-1.7
1,787,282	+				+0.1
1,787,359	+				+0.0
1,787,359	+				-0.5
1,787,359	+				-2.7
1,787,359	+				+0.6
1,787,359	+				+3.0
1,787,359	+				+1.3
1,787,414	+		IAI47_08440	0.10	+0.7
1,787,415	-		IAI47_08440	0.10	+0.9
1,787,443	-		IAI47_08440	0.16	-1.0
1,787,471	+		IAI47_08440	0.21	+1.6
1,787,506	-		IAI47_08440	0.27	+1.8
1,787,893	+				-1.2
1,787,893	+				+1.9
1,787,893	+				-0.6
1,787,894	-				+0.9
1,787,923	-				+2.3
1,787,940	+				-1.6
1,787,945	+				+1.7
1,787,945	+				+1.3
1,787,948	-				+0.0
1,787,948	-				-0.7
1,787,966	+				-2.1
1,787,966	+				+1.3
1,787,966	+				+0.1
1,787,970	+				+3.1
1,787,970	+				-0.2
1,787,970	+				+1.6
1,787,970	+				+0.6
1,787,989	+				+3.2
1,787,989	+				+3.6
1,787,989	+				+1.1
1,787,989	+				+1.6
1,787,989	+				+1.4
1,788,008	+				+0.9
1,788,070	-		IAI47_08445	0.14	+1.0