Strain Fitness in Pantoea sp. MT58 around IAI47_08255

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,744,778	+		IAI47_08245	0.89	-2.6
1,744,778	+		IAI47_08245	0.89	-1.4
1,744,779	-		IAI47_08245	0.89	+2.0
1,744,779	-		IAI47_08245	0.89	-1.2
1,744,817	+				+1.6
1,744,825	+				+0.6
1,744,826	-				-0.3
1,744,826	-				+1.6
1,744,838	+				+0.6
1,744,838	+				+0.3
1,744,838	+				+0.8
1,744,839	-				-1.9
1,744,839	-				-1.2
1,744,839	-				+2.0
1,744,841	+				+0.8
1,744,841	+				-0.2
1,744,841	+				-0.6
1,744,841	+				-0.4
1,744,841	+				+0.8
1,744,841	+				+0.4
1,744,842	-				+1.4
1,744,842	-				+2.3
1,744,846	+				-1.0
1,744,847	-				+1.7
1,744,847	-				+0.6
1,744,899	+				+0.8
1,744,899	+				-0.1
1,744,899	+				-0.6
1,744,899	+				-0.6
1,744,900	-				-0.0
1,744,900	-				-0.3
1,744,900	-				-1.9
1,744,900	-				+1.0
1,744,941	-				-0.1
1,744,979	-		IAI47_08250	0.14	-1.0
1,744,979	-		IAI47_08250	0.14	+0.8
1,744,979	-		IAI47_08250	0.14	-0.2
1,744,980	+		IAI47_08250	0.14	+0.4
1,744,980	+		IAI47_08250	0.14	+0.6
1,744,980	+		IAI47_08250	0.14	-2.0
1,744,981	-		IAI47_08250	0.15	-1.1
1,744,981	-		IAI47_08250	0.15	-2.2
1,744,981	-		IAI47_08250	0.15	+1.3
1,745,052	+		IAI47_08250	0.27	+2.9
1,745,052	+		IAI47_08250	0.27	-1.2
1,745,052	+		IAI47_08250	0.27	-1.2
1,745,052	+		IAI47_08250	0.27	+0.4
1,745,053	-		IAI47_08250	0.27	-0.0
1,745,053	-		IAI47_08250	0.27	-0.7
1,745,053	-		IAI47_08250	0.27	-2.2
1,745,053	-		IAI47_08250	0.27	-0.4
1,745,053	-		IAI47_08250	0.27	-1.0
1,745,053	-		IAI47_08250	0.27	-0.7
1,745,053	-		IAI47_08250	0.27	-0.2
1,745,053	-		IAI47_08250	0.27	-1.2
1,745,053	-		IAI47_08250	0.27	+0.9
1,745,053	-		IAI47_08250	0.27	-2.3
1,745,053	-		IAI47_08250	0.27	-1.6
1,745,056	+		IAI47_08250	0.28	-1.7
1,745,076	+		IAI47_08250	0.31	+0.7
1,745,077	-		IAI47_08250	0.32	-1.4
1,745,170	+		IAI47_08250	0.48	+0.7
1,745,204	+		IAI47_08250	0.54	-0.7
1,745,205	-		IAI47_08250	0.54	+0.8
1,745,205	-		IAI47_08250	0.54	+1.3
1,745,205	-		IAI47_08250	0.54	+2.6
1,745,373	+		IAI47_08250	0.84	-0.5
1,745,373	+		IAI47_08250	0.84	-1.1
1,745,374	-		IAI47_08250	0.84	+2.0
1,745,374	-		IAI47_08250	0.84	+1.6
1,745,374	-		IAI47_08250	0.84	-2.7
1,745,412	+				-1.7
1,745,413	-				-0.6
1,745,425	+				-0.0
1,745,425	+				-1.6
1,745,426	-				-0.4
1,745,442	+				-0.4
1,745,442	+				+1.0
1,745,442	+				+1.3
1,745,443	-				+0.7
1,745,443	-				-1.2
1,745,469	+				-1.0
1,745,469	+				-0.6
1,745,469	+				-2.3
1,745,470	-				+1.8
1,745,470	-				+1.1
1,745,470	-				-2.0
1,745,470	-				-2.4
1,745,470	-				+0.1
1,745,479	-				-0.0
1,745,483	+				+0.7
1,745,483	+				+1.0
1,745,484	-				-0.7
1,745,495	+				+0.8
1,745,496	-				-0.7
1,745,496	-				+1.0
1,745,501	+				+0.8
1,745,501	+				-2.0
1,745,501	+				+2.3
1,745,501	+				-0.8
1,745,502	-				+1.0
1,745,502	-				-1.4
1,745,502	-				+1.0
1,745,502	-				-1.4
1,745,502	-				+1.0
1,745,517	+				-0.7
1,745,518	-				-1.7
1,745,556	-				+1.1
1,745,581	+				-1.0
1,745,582	-				-0.7
1,745,582	-				+0.6
1,745,582	-				+0.1
1,745,582	-				+0.2
1,745,601	-				-1.9
1,745,611	+				-0.4
1,745,612	-				+0.5
1,745,614	+				+0.6
1,745,614	+				-0.3
1,745,614	+				-1.2
1,745,614	+				+2.1
1,745,615	-				-2.2
1,745,649	+				-1.4
1,745,652	+				+1.4
1,745,652	+				+0.2
1,745,652	+				-1.1
1,745,652	+				-0.6
1,745,652	+				+0.9
1,745,653	-				-1.9
1,745,653	-				+0.9
1,745,653	-				-1.6
1,745,653	-				+0.6
1,745,656	-				-2.7
1,745,666	+				+0.9
1,745,667	-				-1.0
1,745,667	-				-1.7
1,745,667	-				-1.3
1,745,685	+				-3.1
1,745,685	+				-1.4
1,745,710	+				-1.2
1,745,711	-				-1.2
1,745,711	-				+2.6
1,745,711	-				+0.5
1,745,711	-				+1.9
1,745,711	-				-1.4
1,745,766	+				-0.8
1,745,766	+				+1.2
1,745,767	-				+0.6
1,745,841	+				+1.0
1,745,853	-				+0.7
1,745,853	-				-1.6
1,745,909	+		IAI47_08255	0.13	+1.6
1,745,909	+		IAI47_08255	0.13	+0.2
1,745,909	+		IAI47_08255	0.13	-1.9
1,745,910	-		IAI47_08255	0.13	-0.8
1,745,910	-		IAI47_08255	0.13	-1.8
1,745,910	-		IAI47_08255	0.13	-0.3
1,745,918	+		IAI47_08255	0.14	-0.7
1,745,936	+		IAI47_08255	0.15	-0.0
1,745,937	-		IAI47_08255	0.16	+1.7
1,745,937	-		IAI47_08255	0.16	-1.1
1,745,949	-		IAI47_08255	0.17	+0.4
1,746,021	-		IAI47_08255	0.24	-2.0
1,746,021	-		IAI47_08255	0.24	+0.2
1,746,031	+		IAI47_08255	0.24	+0.8
1,746,048	+		IAI47_08255	0.26	+2.9
1,746,049	-		IAI47_08255	0.26	-0.1
1,746,057	-		IAI47_08255	0.27	+0.2
1,746,057	-		IAI47_08255	0.27	+1.9
1,746,152	+		IAI47_08255	0.36	+1.4
1,746,152	+		IAI47_08255	0.36	+2.8
1,746,152	+		IAI47_08255	0.36	-1.4
1,746,152	+		IAI47_08255	0.36	-0.1
1,746,152	+		IAI47_08255	0.36	-0.6
1,746,152	+		IAI47_08255	0.36	-1.0
1,746,152	+		IAI47_08255	0.36	+2.9
1,746,153	-		IAI47_08255	0.36	-3.3
1,746,153	-		IAI47_08255	0.36	-0.8
1,746,153	-		IAI47_08255	0.36	+0.2
1,746,187	+		IAI47_08255	0.39	+0.6
1,746,208	+		IAI47_08255	0.41	-2.5
1,746,208	+		IAI47_08255	0.41	+1.0
1,746,208	+		IAI47_08255	0.41	+0.5
1,746,208	+		IAI47_08255	0.41	+1.0
1,746,209	-		IAI47_08255	0.41	+0.9
1,746,212	+		IAI47_08255	0.42	+0.2
1,746,212	+		IAI47_08255	0.42	-0.4
1,746,212	+		IAI47_08255	0.42	-2.7
1,746,213	-		IAI47_08255	0.42	+0.3
1,746,213	-		IAI47_08255	0.42	+1.6
1,746,213	-		IAI47_08255	0.42	-2.2
1,746,213	-		IAI47_08255	0.42	-1.4
1,746,221	+		IAI47_08255	0.42	+1.2
1,746,221	+		IAI47_08255	0.42	+0.5
1,746,222	-		IAI47_08255	0.42	-2.8
1,746,317	+		IAI47_08255	0.51	-0.8
1,746,317	+		IAI47_08255	0.51	-1.0
1,746,318	-		IAI47_08255	0.52	-1.0
1,746,318	-		IAI47_08255	0.52	-1.0
1,746,320	+		IAI47_08255	0.52	-2.7
1,746,320	+		IAI47_08255	0.52	-0.2
1,746,320	+		IAI47_08255	0.52	-1.9
1,746,321	-		IAI47_08255	0.52	-0.0
1,746,321	-		IAI47_08255	0.52	+1.3
1,746,321	-		IAI47_08255	0.52	-1.5
1,746,331	-		IAI47_08255	0.53	-1.1
1,746,331	-		IAI47_08255	0.53	+1.7
1,746,331	-		IAI47_08255	0.53	-0.6
1,746,348	+		IAI47_08255	0.54	+0.2
1,746,348	+		IAI47_08255	0.54	+1.1
1,746,349	-		IAI47_08255	0.54	+0.6
1,746,349	-		IAI47_08255	0.54	-1.4
1,746,365	+		IAI47_08255	0.56	-1.0
1,746,366	-		IAI47_08255	0.56	-2.2
1,746,484	+		IAI47_08255	0.67	+0.2
1,746,484	+		IAI47_08255	0.67	+1.1
1,746,485	-		IAI47_08255	0.67	-0.3
1,746,485	-		IAI47_08255	0.67	+0.9
1,746,485	-		IAI47_08255	0.67	-1.2
1,746,485	-		IAI47_08255	0.67	-2.0
1,746,485	-		IAI47_08255	0.67	-1.2
1,746,537	+		IAI47_08255	0.72	-0.0
1,746,538	-		IAI47_08255	0.72	-0.6
1,746,538	-		IAI47_08255	0.72	+0.2
1,746,568	-		IAI47_08255	0.75	+1.2
1,746,577	+		IAI47_08255	0.76	-1.2
1,746,577	+		IAI47_08255	0.76	-0.5
1,746,578	-		IAI47_08255	0.76	-2.3
1,746,578	-		IAI47_08255	0.76	+0.3
1,746,599	+		IAI47_08255	0.78	-1.4
1,746,600	-		IAI47_08255	0.78	+1.0
1,746,600	-		IAI47_08255	0.78	-1.0
1,746,600	-		IAI47_08255	0.78	+1.5
1,746,600	-		IAI47_08255	0.78	-1.2
1,746,600	-		IAI47_08255	0.78	+0.4
1,746,614	+		IAI47_08255	0.80	-2.1
1,746,614	+		IAI47_08255	0.80	+1.2
1,746,614	+		IAI47_08255	0.80	+1.2
1,746,614	+		IAI47_08255	0.80	-1.1
1,746,615	-		IAI47_08255	0.80	+1.2
1,746,615	-		IAI47_08255	0.80	-1.4
1,746,657	-		IAI47_08255	0.84	-2.3
1,746,674	+		IAI47_08255	0.85	-2.9
1,746,675	-		IAI47_08255	0.85	+2.6
1,746,675	-		IAI47_08255	0.85	-1.0
1,746,719	+		IAI47_08255	0.89	+1.6
1,746,720	-		IAI47_08255	0.90	+2.3
1,746,732	+				-2.1
1,746,803	+				+1.2
1,746,806	+				+1.2
1,746,806	+				-0.8
1,746,807	-				+0.7
1,746,807	-				+1.0
1,746,825	+				-0.2
1,746,825	+				-1.8
1,746,826	-				-0.4
1,746,826	-				+0.6
1,746,902	-		IAI47_08260	0.11	-0.0
1,746,922	+		IAI47_08260	0.14	+0.8
1,746,922	+		IAI47_08260	0.14	-0.2
1,746,928	+		IAI47_08260	0.15	+1.2
1,746,928	+		IAI47_08260	0.15	+0.2
1,746,928	+		IAI47_08260	0.15	+1.1
1,746,928	+		IAI47_08260	0.15	-0.5
1,746,928	+		IAI47_08260	0.15	+1.6
1,746,928	+		IAI47_08260	0.15	+1.6
1,746,928	+		IAI47_08260	0.15	+0.6
1,746,928	+		IAI47_08260	0.15	+1.3
1,746,928	+		IAI47_08260	0.15	-0.8
1,746,928	+		IAI47_08260	0.15	-0.8
1,746,929	-		IAI47_08260	0.15	-0.0
1,746,929	-		IAI47_08260	0.15	-0.1
1,746,929	-		IAI47_08260	0.15	-2.2
1,746,929	-		IAI47_08260	0.15	-1.2
1,746,929	-		IAI47_08260	0.15	+0.2
1,746,929	-		IAI47_08260	0.15	+0.8
1,746,932	+		IAI47_08260	0.15	-0.1
1,746,932	+		IAI47_08260	0.15	+2.6
1,746,932	+		IAI47_08260	0.15	+0.5
1,746,932	+		IAI47_08260	0.15	+1.3
1,746,932	+		IAI47_08260	0.15	+0.4
1,746,932	+		IAI47_08260	0.15	-0.9
1,746,932	+		IAI47_08260	0.15	+0.5
1,746,932	+		IAI47_08260	0.15	-1.0
1,746,932	+		IAI47_08260	0.15	+0.3
1,746,932	+		IAI47_08260	0.15	-1.5
1,746,933	-		IAI47_08260	0.16	+0.3
1,746,933	-		IAI47_08260	0.16	+1.2
1,746,933	-		IAI47_08260	0.16	-0.4
1,746,943	+		IAI47_08260	0.17	+1.9
1,746,943	+		IAI47_08260	0.17	+0.8
1,746,943	+		IAI47_08260	0.17	+0.6
1,746,943	+		IAI47_08260	0.17	-0.4
1,746,944	-		IAI47_08260	0.17	+1.3
1,746,944	-		IAI47_08260	0.17	+0.1
1,746,946	+		IAI47_08260	0.17	-0.4
1,746,946	+		IAI47_08260	0.17	-0.7
1,746,946	+		IAI47_08260	0.17	+0.2
1,746,947	-		IAI47_08260	0.18	-1.8
1,746,947	-		IAI47_08260	0.18	+0.4
1,746,947	-		IAI47_08260	0.18	-0.3
1,746,947	-		IAI47_08260	0.18	+0.5
1,746,949	+		IAI47_08260	0.18	-2.1
1,746,949	+		IAI47_08260	0.18	-0.0
1,746,949	+		IAI47_08260	0.18	-1.8
1,746,949	+		IAI47_08260	0.18	-1.2
1,746,950	-		IAI47_08260	0.18	+0.3
1,746,950	-		IAI47_08260	0.18	-1.2
1,746,950	-		IAI47_08260	0.18	+1.6
1,746,950	-		IAI47_08260	0.18	+1.9
1,746,950	-		IAI47_08260	0.18	+2.0
1,746,950	-		IAI47_08260	0.18	+0.7
1,746,972	+		IAI47_08260	0.21	-0.4
1,746,972	+		IAI47_08260	0.21	+1.6
1,746,972	+		IAI47_08260	0.21	+1.4
1,746,972	+		IAI47_08260	0.21	-1.6
1,746,972	+		IAI47_08260	0.21	-0.3
1,746,972	+		IAI47_08260	0.21	+1.6
1,746,976	+		IAI47_08260	0.22	-0.0
1,746,976	+		IAI47_08260	0.22	+0.3
1,746,977	-		IAI47_08260	0.22	-2.3
1,746,984	+		IAI47_08260	0.23	-1.2
1,747,052	-		IAI47_08260	0.33	+0.7
1,747,052	-		IAI47_08260	0.33	+1.1
1,747,052	-		IAI47_08260	0.33	+0.5
1,747,052	-		IAI47_08260	0.33	-0.1
1,747,078	+		IAI47_08260	0.37	+0.8
1,747,079	-		IAI47_08260	0.37	+0.6
1,747,084	+		IAI47_08260	0.38	-0.0
1,747,085	-		IAI47_08260	0.38	+1.9
1,747,085	-		IAI47_08260	0.38	+0.3
1,747,085	-		IAI47_08260	0.38	+0.3
1,747,102	+		IAI47_08260	0.40	+0.3
1,747,103	-		IAI47_08260	0.41	+1.3
1,747,103	-		IAI47_08260	0.41	-0.1
1,747,147	+		IAI47_08260	0.47	+2.1
1,747,147	+		IAI47_08260	0.47	-2.0
1,747,147	+		IAI47_08260	0.47	+0.6
1,747,147	+		IAI47_08260	0.47	+1.8
1,747,148	-		IAI47_08260	0.47	-1.7
1,747,148	-		IAI47_08260	0.47	+1.1
1,747,207	+		IAI47_08260	0.56	-0.7
1,747,207	+		IAI47_08260	0.56	+1.0
1,747,208	-		IAI47_08260	0.56	+0.7
1,747,208	-		IAI47_08260	0.56	-0.9
1,747,215	+		IAI47_08260	0.57	-0.0
1,747,215	+		IAI47_08260	0.57	-0.8
1,747,216	-		IAI47_08260	0.57	-0.4
1,747,316	+		IAI47_08260	0.72	+1.7
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