Strain Fitness in Pantoea sp. MT58 around IAI47_07805

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,650,795	+				-2.2
1,650,795	+				-0.1
1,650,795	+				-1.0
1,650,796	-				-0.8
1,650,796	-				+0.5
1,650,796	-				+0.9
1,650,796	-				+0.6
1,650,796	-				-1.2
1,650,799	-				+0.6
1,650,928	+		IAI47_07800	0.11	+0.8
1,650,928	+		IAI47_07800	0.11	-2.1
1,650,929	-		IAI47_07800	0.11	+1.2
1,650,935	+		IAI47_07800	0.12	-0.7
1,650,935	+		IAI47_07800	0.12	+1.1
1,650,936	-		IAI47_07800	0.12	+0.9
1,651,057	+		IAI47_07800	0.27	+0.6
1,651,057	+		IAI47_07800	0.27	+1.1
1,651,058	-		IAI47_07800	0.27	-0.4
1,651,108	+		IAI47_07800	0.33	-1.1
1,651,108	+		IAI47_07800	0.33	-1.6
1,651,109	-		IAI47_07800	0.33	+0.1
1,651,109	-		IAI47_07800	0.33	-0.1
1,651,123	+		IAI47_07800	0.35	-1.0
1,651,124	-		IAI47_07800	0.35	+1.6
1,651,468	+		IAI47_07800	0.76	-1.0
1,651,469	-		IAI47_07800	0.76	-0.7
1,651,547	+		IAI47_07800	0.86	-0.7
1,651,709	+				+2.0
1,651,709	+				+1.8
1,651,709	+				+0.3
1,651,710	-				-0.8
1,651,770	+				-1.0
1,651,770	+				+3.0
1,651,770	+				-0.5
1,651,770	+				-0.1
1,651,770	+				+1.6
1,651,771	-				-0.6
1,651,771	-				+0.9
1,651,771	-				+1.6
1,651,771	-				+2.4
1,651,782	+				-1.9
1,651,783	-				-0.2
1,651,845	+		IAI47_07805	0.16	-0.0
1,651,929	+		IAI47_07805	0.25	+0.8
1,651,930	-		IAI47_07805	0.26	-1.8
1,651,969	+		IAI47_07805	0.30	+0.3
1,651,969	+		IAI47_07805	0.30	-1.3
1,651,969	+		IAI47_07805	0.30	+0.1
1,651,970	-		IAI47_07805	0.30	-1.2
1,651,970	-		IAI47_07805	0.30	+0.2
1,652,004	+		IAI47_07805	0.34	-0.4
1,652,005	-		IAI47_07805	0.34	+0.2
1,652,058	+		IAI47_07805	0.39	-1.6
1,652,058	+		IAI47_07805	0.39	-1.0
1,652,059	-		IAI47_07805	0.39	+1.0
1,652,163	+		IAI47_07805	0.51	+1.4
1,652,163	+		IAI47_07805	0.51	-2.5
1,652,164	-		IAI47_07805	0.51	+0.7
1,652,164	-		IAI47_07805	0.51	-1.7
1,652,197	+		IAI47_07805	0.54	-1.6
1,652,197	+		IAI47_07805	0.54	-0.4
1,652,197	+		IAI47_07805	0.54	-1.0
1,652,197	+		IAI47_07805	0.54	-0.4
1,652,197	+		IAI47_07805	0.54	+1.2
1,652,197	+		IAI47_07805	0.54	+2.2
1,652,197	+		IAI47_07805	0.54	-0.8
1,652,197	+		IAI47_07805	0.54	-0.4
1,652,197	+		IAI47_07805	0.54	+0.5
1,652,198	-		IAI47_07805	0.54	-0.7
1,652,198	-		IAI47_07805	0.54	-2.9
1,652,198	-		IAI47_07805	0.54	+0.6
1,652,199	+		IAI47_07805	0.55	-0.3
1,652,199	+		IAI47_07805	0.55	-1.6
1,652,200	-		IAI47_07805	0.55	-2.3
1,652,200	-		IAI47_07805	0.55	-0.4
1,652,200	-		IAI47_07805	0.55	+1.0
1,652,266	-		IAI47_07805	0.62	+2.4
1,652,311	+		IAI47_07805	0.67	-3.0
1,652,312	-		IAI47_07805	0.67	+0.4
1,652,312	-		IAI47_07805	0.67	+1.5
1,652,323	+		IAI47_07805	0.68	+0.8
1,652,516	+		IAI47_07805	0.89	-0.8
1,652,516	+		IAI47_07805	0.89	+0.2
1,652,517	-		IAI47_07805	0.89	-0.2
1,652,517	-		IAI47_07805	0.89	-0.1
1,652,541	+				-0.8
1,652,567	-				+1.0
1,652,568	+				+1.5
1,652,568	+				+0.8
1,652,568	+				-1.4
1,652,584	-				-0.0
1,652,733	+				+2.6
1,652,733	+				-2.0
1,652,733	+				-0.4
1,652,734	-				-0.6
1,652,734	-				+0.2
1,652,734	-				-0.4
1,652,734	-				-0.4
1,652,734	-				-1.2
1,652,734	-				+0.6
1,652,734	-				+1.4
1,652,736	+				+0.3
1,652,736	+				-0.4
1,652,736	+				-0.7
1,652,736	+				+1.2
1,652,736	+				+0.2
1,652,736	+				+1.9
1,652,737	-				+1.2
1,652,737	-				+0.1
1,652,737	-				-0.8
1,652,737	-				+0.2
1,652,737	-				-0.5
1,652,802	+		IAI47_07810	0.10	+0.9
1,652,802	+		IAI47_07810	0.10	-0.3
1,652,802	+		IAI47_07810	0.10	+1.4
1,652,802	+		IAI47_07810	0.10	+1.9
1,652,803	-		IAI47_07810	0.10	+0.4
1,652,875	-		IAI47_07810	0.19	-2.5
1,652,875	-		IAI47_07810	0.19	-0.2
1,652,949	+		IAI47_07810	0.27	+1.2
1,652,949	+		IAI47_07810	0.27	-0.4
1,653,243	+		IAI47_07810	0.61	+1.3
1,653,244	-		IAI47_07810	0.61	+0.6
1,653,244	-		IAI47_07810	0.61	-1.8
1,653,363	+		IAI47_07810	0.75	-1.9
1,653,363	+		IAI47_07810	0.75	+0.4
1,653,364	-		IAI47_07810	0.75	+2.9
1,653,364	-		IAI47_07810	0.75	-0.1
1,653,364	-		IAI47_07810	0.75	+2.1
1,653,364	-		IAI47_07810	0.75	-0.4
1,653,455	+		IAI47_07810	0.86	+1.6
1,653,455	+		IAI47_07810	0.86	+0.4
1,653,486	-		IAI47_07810	0.90	+1.4
1,653,514	+				+1.6
1,653,514	+				+1.6
1,653,515	-				+1.4
1,653,515	-				+0.3
1,653,515	-				-0.2
1,653,528	-				-0.4
1,653,528	-				+0.7
1,653,533	-				-0.5
1,653,533	-				-0.1
1,653,585	+				-0.0
1,653,585	+				+0.1
1,653,585	+				+1.6