Strain Fitness in Pantoea sp. MT58 around IAI47_07785

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,647,287	-		IAI47_07775	0.67	+0.3
1,647,287	-		IAI47_07775	0.67	-0.4
1,647,334	-		IAI47_07775	0.73	+1.8
1,647,503	+				-1.8
1,647,503	+				+0.4
1,647,503	+				-1.2
1,647,503	+				-0.2
1,647,504	-				+0.6
1,647,504	-				-0.3
1,647,504	-				-0.0
1,647,536	+				-0.6
1,647,536	+				-0.0
1,647,580	+				+0.4
1,647,581	-				-0.1
1,647,670	-		IAI47_07780	0.18	+0.4
1,647,670	-		IAI47_07780	0.18	-1.2
1,647,728	+		IAI47_07780	0.26	-0.7
1,647,729	-		IAI47_07780	0.27	-1.2
1,647,729	-		IAI47_07780	0.27	-0.0
1,647,729	-		IAI47_07780	0.27	-1.3
1,647,808	+		IAI47_07780	0.38	+0.6
1,648,000	+		IAI47_07780	0.65	-0.7
1,648,001	-		IAI47_07780	0.65	+1.0
1,648,001	-		IAI47_07780	0.65	+0.4
1,648,048	+		IAI47_07780	0.71	-0.7
1,648,049	-		IAI47_07780	0.71	-1.9
1,648,128	+		IAI47_07780	0.82	+1.8
1,648,128	+		IAI47_07780	0.82	-2.9
1,648,128	+		IAI47_07780	0.82	+1.2
1,648,128	+		IAI47_07780	0.82	+0.2
1,648,128	+		IAI47_07780	0.82	+2.1
1,648,128	+		IAI47_07780	0.82	+1.3
1,648,129	-		IAI47_07780	0.83	+1.0
1,648,129	-		IAI47_07780	0.83	-2.7
1,648,129	-		IAI47_07780	0.83	+2.3
1,648,129	-		IAI47_07780	0.83	-1.9
1,648,129	-		IAI47_07780	0.83	-1.1
1,648,261	-				-0.3
1,648,326	+				-0.2
1,648,326	+				-1.0
1,648,327	-				+1.1
1,648,327	-				-0.0
1,648,512	+		IAI47_07785	0.23	-0.4
1,648,515	+		IAI47_07785	0.23	+0.8
1,648,515	+		IAI47_07785	0.23	-0.7
1,648,515	+		IAI47_07785	0.23	+2.0
1,648,515	+		IAI47_07785	0.23	-2.4
1,648,516	-		IAI47_07785	0.23	+2.1
1,648,516	-		IAI47_07785	0.23	-0.3
1,648,516	-		IAI47_07785	0.23	-1.9
1,648,516	-		IAI47_07785	0.23	-0.2
1,648,675	-		IAI47_07785	0.37	-1.4
1,648,675	-		IAI47_07785	0.37	-0.7
1,648,675	-		IAI47_07785	0.37	-1.0
1,648,727	+		IAI47_07785	0.42	-0.0
1,648,727	+		IAI47_07785	0.42	-2.0
1,648,762	+		IAI47_07785	0.45	+1.9
1,648,762	+		IAI47_07785	0.45	-0.7
1,648,763	-		IAI47_07785	0.45	-1.6
1,648,780	+		IAI47_07785	0.47	-2.7
1,648,792	+		IAI47_07785	0.48	-0.7
1,648,793	-		IAI47_07785	0.48	-1.5
1,648,793	-		IAI47_07785	0.48	+1.6
1,648,804	+		IAI47_07785	0.49	-0.7
1,648,804	+		IAI47_07785	0.49	-2.0
1,648,804	+		IAI47_07785	0.49	+1.0
1,648,812	+		IAI47_07785	0.50	-0.8
1,648,813	-		IAI47_07785	0.50	-1.2
1,648,813	-		IAI47_07785	0.50	+0.1
1,649,152	+		IAI47_07785	0.79	-1.2
1,649,153	-		IAI47_07785	0.80	+1.3
1,649,248	-		IAI47_07785	0.88	+1.8
1,649,264	+		IAI47_07785	0.89	+1.6
1,649,265	-		IAI47_07785	0.89	-0.8
1,649,380	+				+0.7
1,649,381	-				-1.7
1,649,381	-				+2.9
1,649,381	-				+0.6
1,649,381	-				-2.4
1,649,432	+				-2.2
1,649,432	+				-1.6
1,649,490	+		IAI47_07790	0.20	-1.9
1,649,490	+		IAI47_07790	0.20	+1.4
1,649,490	+		IAI47_07790	0.20	+0.4
1,649,491	-		IAI47_07790	0.20	+2.2
1,649,491	-		IAI47_07790	0.20	+0.4
1,649,491	-		IAI47_07790	0.20	-2.0
1,649,655	-		IAI47_07790	0.50	-0.7
1,649,902	+				-0.2
1,649,903	-				+0.3
1,649,946	+				-1.2
1,649,947	-				-0.4
1,649,947	-				-0.3
1,649,963	+				-0.4
1,649,964	-				+1.5
1,649,964	-				+1.1
1,649,965	+				-1.7
1,649,965	+				+1.3
1,649,965	+				-1.8
1,649,965	+				+0.3
1,649,966	-				+0.9
1,649,966	-				+0.6
1,649,966	-				-0.7
1,649,966	-				-0.0
1,649,966	-				-1.0
1,649,985	+				-0.1
1,650,072	+		IAI47_07795	0.11	+0.4
1,650,072	+		IAI47_07795	0.11	+1.1
1,650,208	+		IAI47_07795	0.29	-2.4
1,650,311	-		IAI47_07795	0.42	+0.8
1,650,311	-		IAI47_07795	0.42	-0.3
1,650,348	-		IAI47_07795	0.47	+0.5