Strain Fitness in Pantoea sp. MT58 around IAI47_07465

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,576,506	-		IAI47_07455	0.19	-1.7
1,576,506	-		IAI47_07455	0.19	+1.0
1,576,601	-		IAI47_07455	0.38	-1.7
1,576,700	+		IAI47_07455	0.58	+0.3
1,576,701	-		IAI47_07455	0.59	+1.6
1,576,714	-		IAI47_07455	0.61	+1.2
1,576,715	-		IAI47_07455	0.61	+0.9
1,576,723	+		IAI47_07455	0.63	+0.5
1,576,729	-		IAI47_07455	0.64	-0.1
1,576,743	+		IAI47_07455	0.67	-0.6
1,576,743	+		IAI47_07455	0.67	+0.0
1,576,743	+		IAI47_07455	0.67	-1.7
1,576,744	-		IAI47_07455	0.67	-1.0
1,576,762	-		IAI47_07455	0.71	+0.6
1,576,767	+		IAI47_07455	0.72	-0.7
1,576,768	-		IAI47_07455	0.72	-2.1
1,576,821	-		IAI47_07455	0.83	+1.2
1,576,836	+		IAI47_07455	0.86	-1.9
1,576,851	+		IAI47_07455	0.89	+2.5
1,576,858	-				-0.7
1,576,888	-				+0.3
1,576,904	-				-0.7
1,576,940	-				+0.2
1,577,021	+				+4.5
1,577,022	-				+1.2
1,577,037	+				+0.8
1,577,037	+				-0.2
1,577,037	+				-0.2
1,577,056	+				+0.1
1,577,056	+				+0.6
1,577,065	+				-2.1
1,577,065	+				-1.4
1,577,065	+				-0.6
1,577,066	-				+1.3
1,577,066	-				-1.6
1,577,069	+				-1.9
1,577,069	+				+1.3
1,577,070	-				+0.8
1,577,070	-				+0.8
1,577,084	+				+0.3
1,577,084	+				-0.9
1,577,085	-				+0.9
1,577,104	+		IAI47_07460	0.16	-1.2
1,577,130	+		IAI47_07460	0.27	-1.0
1,577,131	-		IAI47_07460	0.27	+0.0
1,577,149	+		IAI47_07460	0.35	+0.0
1,577,154	+		IAI47_07460	0.37	+1.0
1,577,154	+		IAI47_07460	0.37	-0.2
1,577,154	+		IAI47_07460	0.37	-0.1
1,577,155	-		IAI47_07460	0.38	-1.0
1,577,155	-		IAI47_07460	0.38	+0.4
1,577,197	+		IAI47_07460	0.56	+0.6
1,577,236	-		IAI47_07460	0.73	+0.2
1,577,242	+		IAI47_07460	0.75	-1.6
1,577,242	+		IAI47_07460	0.75	-1.7
1,577,243	-		IAI47_07460	0.76	-1.4
1,577,245	+		IAI47_07460	0.77	-2.0
1,577,246	-		IAI47_07460	0.77	-0.4
1,577,246	-		IAI47_07460	0.77	+0.2
1,577,246	-		IAI47_07460	0.77	-1.2
1,577,246	-		IAI47_07460	0.77	+0.5
1,577,246	-		IAI47_07460	0.77	+0.6
1,577,246	-		IAI47_07460	0.77	+0.6
1,577,246	-		IAI47_07460	0.77	+0.2
1,577,248	+		IAI47_07460	0.78	+2.6
1,577,249	-		IAI47_07460	0.78	+1.3
1,577,249	-		IAI47_07460	0.78	+0.0
1,577,249	-		IAI47_07460	0.78	-0.6
1,577,249	-		IAI47_07460	0.78	-1.1
1,577,249	-		IAI47_07460	0.78	-1.0
1,577,286	+				-1.2
1,577,287	-				-0.4
1,577,291	-				-1.2
1,577,302	+				+1.2
1,577,331	-				+0.3
1,577,383	+				-0.2
1,577,383	+				+0.6
1,577,389	+				-1.7
1,577,389	+				+1.8
1,577,390	-				+0.6
1,577,432	-				+0.6
1,577,444	+				+0.8
1,577,445	-				+1.6
1,577,449	+				-2.2
1,577,456	-				+0.1
1,577,462	-				-1.4
1,577,481	+				+0.0
1,577,481	+				+1.4
1,577,481	+				+1.2
1,577,481	+				-0.2
1,577,482	-				+1.1
1,577,482	-				+1.3
1,577,482	-				+0.4
1,577,496	+				+1.3
1,577,496	+				+1.6
1,577,497	-				-1.9
1,577,497	-				+1.8
1,577,497	-				+1.2
1,577,497	-				-0.8
1,577,505	+				+1.3
1,577,505	+				+0.8
1,577,505	+				+1.3
1,577,505	+				-0.2
1,577,505	+				-0.7
1,577,506	-				+1.2
1,577,506	-				-1.0
1,577,506	-				-2.6
1,577,554	+				+1.2
1,577,554	+				+0.7
1,577,554	+				-0.4
1,577,554	+				-1.4
1,577,554	+				+0.8
1,577,555	-				-0.1
1,577,555	-				-0.6
1,577,555	-				-1.6
1,577,555	-				+0.4
1,577,555	-				+0.2
1,577,555	-				+1.4
1,577,555	-				-2.8
1,577,648	+		IAI47_07465	0.18	+0.0
1,577,648	+		IAI47_07465	0.18	+1.4
1,577,649	-		IAI47_07465	0.18	+0.2
1,577,649	-		IAI47_07465	0.18	+1.2
1,577,649	-		IAI47_07465	0.18	-1.7
1,577,680	+		IAI47_07465	0.22	+0.9
1,577,680	+		IAI47_07465	0.22	+0.9
1,577,680	+		IAI47_07465	0.22	+0.7
1,577,681	-		IAI47_07465	0.22	-0.1
1,577,681	-		IAI47_07465	0.22	+1.9
1,577,681	-		IAI47_07465	0.22	+2.3
1,577,694	+		IAI47_07465	0.23	-0.7
1,577,695	-		IAI47_07465	0.23	-0.8
1,577,695	-		IAI47_07465	0.23	+0.3
1,577,695	-		IAI47_07465	0.23	-1.6
1,577,758	+		IAI47_07465	0.31	+0.6
1,577,758	+		IAI47_07465	0.31	-1.0
1,577,758	+		IAI47_07465	0.31	-2.2
1,577,758	+		IAI47_07465	0.31	-0.8
1,577,758	+		IAI47_07465	0.31	+0.6
1,577,759	-		IAI47_07465	0.31	+0.0
1,577,766	+		IAI47_07465	0.32	-0.1
1,577,766	+		IAI47_07465	0.32	+0.6
1,577,766	+		IAI47_07465	0.32	-2.2
1,577,767	-		IAI47_07465	0.32	+1.3
1,577,832	+		IAI47_07465	0.40	+0.3
1,577,833	-		IAI47_07465	0.40	-0.7
1,577,833	-		IAI47_07465	0.40	+1.3
1,577,833	-		IAI47_07465	0.40	+0.3
1,577,833	-		IAI47_07465	0.40	+0.0
1,577,875	+		IAI47_07465	0.45	+1.9
1,577,875	+		IAI47_07465	0.45	+1.1
1,577,876	-		IAI47_07465	0.45	-0.0
1,577,901	+		IAI47_07465	0.48	-2.0
1,577,901	+		IAI47_07465	0.48	+0.4
1,577,901	+		IAI47_07465	0.48	-1.7
1,577,902	-		IAI47_07465	0.48	-0.8
1,577,902	-		IAI47_07465	0.48	-2.0
1,577,902	-		IAI47_07465	0.48	+1.3
1,577,902	-		IAI47_07465	0.48	+0.3
1,577,973	+		IAI47_07465	0.57	-0.2
1,577,973	+		IAI47_07465	0.57	+0.6
1,577,974	-		IAI47_07465	0.57	-1.9
1,577,978	+		IAI47_07465	0.57	-1.6
1,577,978	+		IAI47_07465	0.57	+2.2
1,577,978	+		IAI47_07465	0.57	+1.6
1,577,978	+		IAI47_07465	0.57	+0.5
1,577,978	+		IAI47_07465	0.57	-3.0
1,577,979	-		IAI47_07465	0.57	-0.7
1,577,979	-		IAI47_07465	0.57	-2.9
1,577,979	-		IAI47_07465	0.57	-0.6
1,578,060	-		IAI47_07465	0.67	-1.7
1,578,067	+		IAI47_07465	0.68	+3.1
1,578,067	+		IAI47_07465	0.68	-1.0
1,578,067	+		IAI47_07465	0.68	-1.1
1,578,068	-		IAI47_07465	0.68	+0.0
1,578,068	-		IAI47_07465	0.68	+0.6
1,578,068	-		IAI47_07465	0.68	+0.0
1,578,077	+		IAI47_07465	0.69	-1.4
1,578,077	+		IAI47_07465	0.69	+1.6
1,578,078	-		IAI47_07465	0.69	-0.3
1,578,109	+		IAI47_07465	0.73	+0.6
1,578,109	+		IAI47_07465	0.73	-1.1
1,578,109	+		IAI47_07465	0.73	+0.1
1,578,109	+		IAI47_07465	0.73	-1.9
1,578,109	+		IAI47_07465	0.73	-0.9
1,578,109	+		IAI47_07465	0.73	-2.3
1,578,109	+		IAI47_07465	0.73	+1.6
1,578,109	+		IAI47_07465	0.73	-2.1
1,578,110	-		IAI47_07465	0.73	-1.2
1,578,110	-		IAI47_07465	0.73	+0.1
1,578,110	-		IAI47_07465	0.73	-1.0
1,578,110	-		IAI47_07465	0.73	-2.0
1,578,110	-		IAI47_07465	0.73	+1.6
1,578,110	-		IAI47_07465	0.73	+2.3
1,578,110	-		IAI47_07465	0.73	+1.0
1,578,110	-		IAI47_07465	0.73	+2.9
1,578,110	-		IAI47_07465	0.73	+1.4
1,578,110	-		IAI47_07465	0.73	-0.7
1,578,179	+		IAI47_07465	0.81	+0.1
1,578,179	+		IAI47_07465	0.81	-1.3
1,578,180	-		IAI47_07465	0.81	-0.7
1,578,180	-		IAI47_07465	0.81	-0.1
1,578,270	+				-1.1
1,578,270	+				-0.6
1,578,270	+				+1.0
1,578,270	+				+2.2
1,578,270	+				+1.2
1,578,270	+				+1.9
1,578,270	+				+0.3
1,578,271	-				+1.2
1,578,271	-				-0.5
1,578,271	-				+0.2
1,578,274	+				-0.2
1,578,276	+				-0.7
1,578,276	+				+2.2
1,578,277	-				+1.0
1,578,277	-				+0.9
1,578,277	-				+0.6
1,578,280	+				-1.0
1,578,280	+				+1.5
1,578,280	+				-1.6
1,578,280	+				-0.4
1,578,280	+				+0.9
1,578,281	-				-0.1
1,578,281	-				+1.0
1,578,281	-				+1.9
1,578,281	-				-0.2
1,578,281	-				+1.3
1,578,288	+				-0.5
1,578,289	-				+0.4
1,578,335	-				-0.6
1,578,391	+				-1.9
1,578,470	+				+1.6
1,578,471	-				-0.7
1,578,471	-				+0.0
1,578,477	-				-0.8
1,578,477	-				-1.0
1,578,501	-				-1.7
1,578,505	-				+1.0
1,578,505	-				+0.9
1,578,505	-				-0.4
1,578,579	+		IAI47_07470	0.34	+1.2
1,578,590	+		IAI47_07470	0.39	+1.6
1,578,593	-		IAI47_07470	0.40	+1.6
1,578,630	-		IAI47_07470	0.57	+0.9
1,578,693	+		IAI47_07470	0.86	+0.0
1,578,721	+				+1.9
1,578,744	+				+1.4
1,578,852	-		IAI47_07475	0.34	-1.4
1,578,957	+		IAI47_07475	0.68	-1.4
1,579,078	-				+0.1
1,579,176	-				-1.0
1,579,197	+				-0.4
1,579,235	-		IAI47_07480	0.14	-2.3
1,579,235	-		IAI47_07480	0.14	+2.0
1,579,296	+		IAI47_07480	0.35	-1.6
1,579,325	-		IAI47_07480	0.45	+1.8