Strain Fitness in Pantoea sp. MT58 around IAI47_07205

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,520,973	+		IAI47_07200	0.53	+0.6
1,520,973	+		IAI47_07200	0.53	-0.3
1,520,973	+		IAI47_07200	0.53	-0.1
1,521,171	+		IAI47_07200	0.73	+1.0
1,521,171	+		IAI47_07200	0.73	-1.2
1,521,171	+		IAI47_07200	0.73	-0.6
1,521,192	+		IAI47_07200	0.75	+2.6
1,521,205	+		IAI47_07200	0.76	+0.8
1,521,205	+		IAI47_07200	0.76	+2.2
1,521,310	-		IAI47_07200	0.86	-1.3
1,521,369	+				-0.2
1,521,369	+				-1.2
1,521,388	+				+0.7
1,521,388	+				-2.0
1,521,389	-				+0.8
1,521,421	+				-1.7
1,521,421	+				+0.0
1,521,421	+				-0.7
1,521,421	+				+0.7
1,521,422	-				+2.2
1,521,422	-				+0.6
1,521,422	-				-0.1
1,521,422	-				+1.9
1,521,422	-				-1.0
1,521,422	-				+0.7
1,521,448	+				+0.1
1,521,448	+				-0.2
1,521,448	+				+1.4
1,521,448	+				-1.1
1,521,449	-				+1.2
1,521,469	+				-1.2
1,521,469	+				+0.1
1,521,469	+				+2.6
1,521,470	-				-2.4
1,521,470	-				+0.0
1,521,491	-				-1.7
1,521,491	-				-1.4
1,521,491	-				-0.4
1,521,491	-				-0.3
1,521,521	+				+0.6
1,521,521	+				-1.0
1,521,521	+				+0.6
1,521,522	-				+0.4
1,521,522	-				+0.6
1,521,524	+				+0.6
1,521,524	+				+0.9
1,521,524	+				+0.0
1,521,524	+				+0.8
1,521,525	-				+0.4
1,521,525	-				+1.4
1,521,525	-				+0.1
1,521,640	+				-1.3
1,521,640	+				+0.3
1,521,640	+				+2.9
1,521,640	+				+2.1
1,521,640	+				+0.8
1,521,640	+				+1.2
1,521,640	+				+2.4
1,521,640	+				+0.6
1,521,641	-				-0.1
1,521,641	-				-1.7
1,521,641	-				+1.3
1,521,641	-				+2.0
1,521,641	-				+2.3
1,521,644	+				+0.3
1,521,644	+				+0.0
1,521,644	+				+1.8
1,521,645	-				+0.4
1,521,648	-				-0.4
1,521,721	-				-0.4
1,521,721	-				+0.0
1,521,721	-				+0.0
1,521,748	+				+3.2
1,521,748	+				-1.6
1,521,748	+				+0.7
1,521,749	-				+0.2
1,521,749	-				+1.2
1,521,749	-				+2.8
1,521,749	-				+1.6
1,521,865	+				-0.4
1,521,865	+				-2.6
1,521,865	+				+0.0
1,521,865	+				-3.1
1,521,882	+				+1.1
1,521,882	+				-1.4
1,521,882	+				+0.7
1,521,882	+				+1.4
1,521,883	-				-0.4
1,521,883	-				-1.2
1,521,883	-				+0.6
1,521,883	-				+2.6
1,521,883	-				-1.2
1,521,883	-				-1.0
1,522,297	+		IAI47_07205	0.38	+0.3
1,522,374	+		IAI47_07205	0.45	+1.6
1,522,375	-		IAI47_07205	0.45	+1.4
1,522,387	+		IAI47_07205	0.46	+1.4
1,522,511	+		IAI47_07205	0.57	+0.6
1,522,511	+		IAI47_07205	0.57	+0.2
1,522,511	+		IAI47_07205	0.57	-2.1
1,522,512	-		IAI47_07205	0.57	-0.3
1,522,512	-		IAI47_07205	0.57	-0.6
1,522,567	+		IAI47_07205	0.62	+0.6
1,522,567	+		IAI47_07205	0.62	+1.6
1,522,568	-		IAI47_07205	0.62	+2.2
1,522,642	+		IAI47_07205	0.69	+1.9
1,522,642	+		IAI47_07205	0.69	+1.1
1,522,642	+		IAI47_07205	0.69	-2.7
1,522,643	-		IAI47_07205	0.69	-1.2
1,522,643	-		IAI47_07205	0.69	+1.5
1,522,643	-		IAI47_07205	0.69	-0.4
1,522,643	-		IAI47_07205	0.69	+0.6
1,522,643	-		IAI47_07205	0.69	+2.4
1,522,654	+		IAI47_07205	0.70	+1.6
1,522,654	+		IAI47_07205	0.70	-0.1
1,522,655	-		IAI47_07205	0.70	-0.2
1,522,655	-		IAI47_07205	0.70	+0.1
1,522,655	-		IAI47_07205	0.70	+2.4
1,522,655	-		IAI47_07205	0.70	-0.4
1,522,655	-		IAI47_07205	0.70	+1.7
1,522,655	-		IAI47_07205	0.70	+0.8
1,522,655	-		IAI47_07205	0.70	+0.8
1,522,655	-		IAI47_07205	0.70	-0.6
1,522,695	+		IAI47_07205	0.74	-0.6
1,522,696	-		IAI47_07205	0.74	+0.0
1,522,719	+		IAI47_07205	0.76	-2.3
1,522,719	+		IAI47_07205	0.76	+1.2
1,522,719	+		IAI47_07205	0.76	-2.0
1,522,720	-		IAI47_07205	0.76	+0.0
1,522,720	-		IAI47_07205	0.76	-0.7
1,522,762	+		IAI47_07205	0.80	-1.5
1,522,762	+		IAI47_07205	0.80	+2.6
1,522,762	+		IAI47_07205	0.80	-1.1
1,522,762	+		IAI47_07205	0.80	+0.4
1,522,762	+		IAI47_07205	0.80	+1.4
1,522,762	+		IAI47_07205	0.80	-1.6
1,522,763	-		IAI47_07205	0.80	+1.1
1,522,763	-		IAI47_07205	0.80	-0.6
1,522,763	-		IAI47_07205	0.80	+0.3
1,522,763	-		IAI47_07205	0.80	+1.3
1,522,763	-		IAI47_07205	0.80	+1.3
1,522,763	-		IAI47_07205	0.80	-1.1
1,522,797	+		IAI47_07205	0.83	+1.6
1,522,797	+		IAI47_07205	0.83	+1.2
1,522,797	+		IAI47_07205	0.83	-0.6
1,522,798	-		IAI47_07205	0.83	-0.7
1,522,798	-		IAI47_07205	0.83	+0.4
1,522,818	+		IAI47_07205	0.85	+0.3
1,522,819	-		IAI47_07205	0.85	+0.0
1,522,819	-		IAI47_07205	0.85	-0.6
1,522,819	-		IAI47_07205	0.85	+0.2
1,522,819	-		IAI47_07205	0.85	+2.4
1,522,994	+				-0.7
1,522,994	+				-2.0
1,522,995	-				+0.2
1,523,132	+				+0.0
1,523,132	+				+0.0
1,523,132	+				-0.1
1,523,133	-				-1.0
1,523,133	-				+2.4
1,523,133	-				-0.4
1,523,133	-				+0.8
1,523,220	+				-0.9
1,523,220	+				+0.0
1,523,221	-				-0.4
1,523,221	-				-0.7
1,523,221	-				-0.3
1,523,238	+				-1.9
1,523,238	+				-0.4
1,523,238	+				+1.5
1,523,238	+				+0.6
1,523,238	+				+0.6
1,523,239	-				-1.2
1,523,240	+				-2.1
1,523,241	-				+0.3
1,523,241	-				+1.7
1,523,241	-				-0.4
1,523,241	-				+0.4
1,523,327	+		IAI47_07210	0.11	+1.1
1,523,327	+		IAI47_07210	0.11	-0.4
1,523,327	+		IAI47_07210	0.11	-0.1
1,523,328	-		IAI47_07210	0.11	-2.2
1,523,328	-		IAI47_07210	0.11	-2.7
1,523,519	+		IAI47_07210	0.18	+1.6
1,523,519	+		IAI47_07210	0.18	+0.0
1,523,519	+		IAI47_07210	0.18	-1.2
1,523,520	-		IAI47_07210	0.18	-0.2
1,523,520	-		IAI47_07210	0.18	-1.2
1,523,520	-		IAI47_07210	0.18	+2.8
1,523,547	+		IAI47_07210	0.18	+2.1
1,523,547	+		IAI47_07210	0.18	+0.3
1,523,547	+		IAI47_07210	0.18	-0.4
1,523,547	+		IAI47_07210	0.18	-1.4
1,523,547	+		IAI47_07210	0.18	-0.8
1,523,547	+		IAI47_07210	0.18	-1.4
1,523,547	+		IAI47_07210	0.18	+1.6
1,523,548	-		IAI47_07210	0.18	-0.4
1,523,548	-		IAI47_07210	0.18	-0.4
1,523,548	-		IAI47_07210	0.18	+0.3
1,523,548	-		IAI47_07210	0.18	-1.6
1,523,548	-		IAI47_07210	0.18	+1.9
1,523,548	-		IAI47_07210	0.18	-0.3
1,523,585	+		IAI47_07210	0.20	+0.3
1,523,589	-		IAI47_07210	0.20	-1.0
1,523,589	-		IAI47_07210	0.20	-0.0
1,523,654	+		IAI47_07210	0.22	+0.2
1,523,654	+		IAI47_07210	0.22	-2.0
1,523,700	-		IAI47_07210	0.23	-1.7
1,523,804	+		IAI47_07210	0.27	+0.0
1,523,804	+		IAI47_07210	0.27	-0.7
1,523,805	-		IAI47_07210	0.27	+0.4
1,523,805	-		IAI47_07210	0.27	-1.2
1,523,843	+		IAI47_07210	0.28	+3.2
1,523,844	-		IAI47_07210	0.28	+0.8
1,523,844	-		IAI47_07210	0.28	-1.1
1,523,912	+		IAI47_07210	0.30	+0.3