Strain Fitness in Pantoea sp. MT58 around IAI47_06525

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,356,863	+		IAI47_06515	0.68	+0.3
1,356,878	+		IAI47_06515	0.69	+1.1
1,356,878	+		IAI47_06515	0.69	-0.7
1,356,878	+		IAI47_06515	0.69	-0.5
1,356,879	-		IAI47_06515	0.69	+0.7
1,356,879	-		IAI47_06515	0.69	-0.3
1,356,974	+		IAI47_06515	0.78	-1.7
1,356,974	+		IAI47_06515	0.78	+0.6
1,356,975	-		IAI47_06515	0.78	-0.7
1,357,010	+		IAI47_06515	0.81	-1.6
1,357,010	+		IAI47_06515	0.81	-0.2
1,357,011	-		IAI47_06515	0.81	+0.6
1,357,011	-		IAI47_06515	0.81	+0.5
1,357,070	-		IAI47_06515	0.87	+1.6
1,357,088	+		IAI47_06515	0.88	+0.0
1,357,088	+		IAI47_06515	0.88	+0.2
1,357,088	+		IAI47_06515	0.88	+0.8
1,357,088	+		IAI47_06515	0.88	+0.1
1,357,088	+		IAI47_06515	0.88	+0.0
1,357,088	+		IAI47_06515	0.88	-2.6
1,357,088	+		IAI47_06515	0.88	+1.0
1,357,088	+		IAI47_06515	0.88	-1.2
1,357,089	-		IAI47_06515	0.88	+0.0
1,357,089	-		IAI47_06515	0.88	+0.3
1,357,089	-		IAI47_06515	0.88	+1.3
1,357,091	+		IAI47_06515	0.88	+0.9
1,357,091	+		IAI47_06515	0.88	-2.0
1,357,092	-		IAI47_06515	0.88	+0.7
1,357,092	-		IAI47_06515	0.88	-0.4
1,357,111	+				-1.6
1,357,111	+				-1.2
1,357,111	+				+0.9
1,357,111	+				+2.3
1,357,111	+				+0.1
1,357,111	+				-1.6
1,357,111	+				-0.5
1,357,111	+				+0.5
1,357,111	+				-0.4
1,357,111	+				+0.1
1,357,111	+				+1.6
1,357,112	-				-0.6
1,357,112	-				-1.0
1,357,112	-				+0.8
1,357,112	-				-1.0
1,357,112	-				-2.2
1,357,112	-				+1.6
1,357,112	-				+1.0
1,357,112	-				+2.1
1,357,115	+				+0.0
1,357,115	+				+0.4
1,357,115	+				+0.0
1,357,115	+				-3.3
1,357,115	+				-0.7
1,357,115	+				-0.6
1,357,115	+				+1.3
1,357,115	+				+0.6
1,357,115	+				-1.2
1,357,115	+				+1.0
1,357,116	-				+1.4
1,357,116	-				+0.4
1,357,116	-				+1.3
1,357,116	-				+0.9
1,357,116	-				-2.5
1,357,116	-				-1.0
1,357,116	-				+0.7
1,357,116	-				+0.7
1,357,116	-				+0.6
1,357,116	-				+1.7
1,357,125	-				+1.0
1,357,178	-				+1.6
1,357,197	+				+0.6
1,357,197	+				-1.7
1,357,197	+				-1.2
1,357,197	+				-0.4
1,357,197	+				-0.5
1,357,197	+				+0.2
1,357,198	-				-2.3
1,357,198	-				+1.6
1,357,198	-				+4.4
1,357,209	-				-0.4
1,357,209	-				-1.7
1,357,217	+				-1.0
1,357,217	+				-2.9
1,357,217	+				-0.1
1,357,217	+				-0.1
1,357,217	+				-1.0
1,357,217	+				-0.1
1,357,217	+				-0.2
1,357,217	+				+0.3
1,357,218	-				+1.3
1,357,238	+				+1.3
1,357,238	+				+1.6
1,357,257	+		IAI47_06520	0.10	+0.9
1,357,257	+		IAI47_06520	0.10	+1.1
1,357,257	+		IAI47_06520	0.10	-0.4
1,357,258	-		IAI47_06520	0.11	-0.1
1,357,270	-		IAI47_06520	0.17	+1.5
1,357,270	-		IAI47_06520	0.17	-0.3
1,357,326	+		IAI47_06520	0.46	-0.2
1,357,326	+		IAI47_06520	0.46	-1.7
1,357,326	+		IAI47_06520	0.46	+1.2
1,357,326	+		IAI47_06520	0.46	-0.5
1,357,326	+		IAI47_06520	0.46	-3.0
1,357,326	+		IAI47_06520	0.46	-0.6
1,357,327	-		IAI47_06520	0.46	-1.4
1,357,327	-		IAI47_06520	0.46	+0.4
1,357,327	-		IAI47_06520	0.46	-1.1
1,357,327	-		IAI47_06520	0.46	+0.5
1,357,327	-		IAI47_06520	0.46	-0.2
1,357,327	-		IAI47_06520	0.46	-1.9
1,357,449	+				+0.0
1,357,449	+				+1.6
1,357,450	-				+2.8
1,357,487	+				-1.7
1,357,487	+				+0.4
1,357,525	+				+2.6
1,357,525	+				+0.1
1,357,525	+				-1.4
1,357,525	+				+2.5
1,357,525	+				-1.0
1,357,574	-				-0.0
1,357,637	+				+0.0
1,357,637	+				+2.3
1,357,637	+				+1.9
1,357,637	+				+0.9
1,357,637	+				+1.5
1,357,637	+				-2.0
1,357,637	+				+1.6
1,357,638	-				-1.0
1,357,638	-				+0.0
1,357,640	-				-1.0
1,357,684	+				-1.0
1,357,684	+				+0.0
1,357,684	+				+0.8
1,357,684	+				-0.4
1,357,685	-				+0.7
1,357,685	-				-0.5
1,357,685	-				+0.5
1,357,685	-				+0.6
1,357,695	+				+0.0
1,357,695	+				-0.7
1,357,695	+				+0.1
1,357,695	+				-0.4
1,357,696	-				-1.7
1,357,696	-				+0.3
1,357,696	-				+0.6
1,357,696	-				+1.6
1,357,696	-				+0.3
1,357,696	-				-1.7
1,357,703	+				-1.0
1,357,703	+				+0.5
1,357,704	-				-1.3
1,357,704	-				+0.0
1,357,704	-				-1.1
1,357,704	-				+1.6
1,357,713	-				+2.7
1,357,713	-				+0.5
1,357,713	-				+1.3
1,357,713	-				+0.3
1,357,713	-				+1.6
1,357,713	-				-0.4
1,357,713	-				+1.6
1,357,718	+				-0.2
1,357,719	-				+0.4
1,357,747	+				+2.3
1,357,747	+				+0.9
1,357,747	+				-0.7
1,357,748	-				+1.2
1,357,748	-				+0.3
1,357,783	+				-0.7
1,357,793	+				-0.7
1,357,794	-				-0.5
1,357,819	-				-1.2
1,357,841	-				+1.3
1,358,913	+				-2.7
1,358,913	+				-1.6
1,358,924	-				-1.2
1,359,008	+		IAI47_06530	0.15	+0.6
1,359,009	-		IAI47_06530	0.16	-1.2
1,359,009	-		IAI47_06530	0.16	-1.2
1,359,009	-		IAI47_06530	0.16	-2.5
1,359,018	+		IAI47_06530	0.17	-0.9
1,359,018	+		IAI47_06530	0.17	-2.6
1,359,018	+		IAI47_06530	0.17	-0.5
1,359,058	+		IAI47_06530	0.23	-1.4
1,359,059	-		IAI47_06530	0.23	-0.1
1,359,141	-		IAI47_06530	0.36	-1.2
1,359,155	-		IAI47_06530	0.38	-1.2
1,359,244	+		IAI47_06530	0.52	-0.6
1,359,245	-		IAI47_06530	0.52	+2.0
1,359,245	-		IAI47_06530	0.52	+0.2
1,359,265	+		IAI47_06530	0.55	+0.7
1,359,265	+		IAI47_06530	0.55	-2.3
1,359,266	-		IAI47_06530	0.56	-1.2
1,359,273	-		IAI47_06530	0.57	-1.9
1,359,273	-		IAI47_06530	0.57	+1.6
1,359,307	+		IAI47_06530	0.62	-1.9
1,359,308	-		IAI47_06530	0.62	+4.1
1,359,308	-		IAI47_06530	0.62	-1.6
1,359,430	+		IAI47_06530	0.81	-3.2
1,359,431	-		IAI47_06530	0.81	+1.9
1,359,431	-		IAI47_06530	0.81	+1.8
1,359,431	-		IAI47_06530	0.81	-0.5
1,359,431	-		IAI47_06530	0.81	-2.1
1,359,431	-		IAI47_06530	0.81	+2.2
1,359,431	-		IAI47_06530	0.81	+0.1
1,359,464	+		IAI47_06530	0.86	+0.6
1,359,465	-		IAI47_06530	0.87	-0.7
1,359,465	-		IAI47_06530	0.87	+0.3
1,359,484	+		IAI47_06530	0.90	-1.6
1,359,484	+		IAI47_06530	0.90	-0.7
1,359,485	-		IAI47_06530	0.90	+2.6
1,359,521	+				+0.4
1,359,522	-				+0.1
1,359,522	-				-2.7
1,359,522	-				+2.0
1,359,522	-				+0.8
1,359,523	+				-0.4
1,359,523	+				+1.5
1,359,523	+				+0.9
1,359,524	-				-1.8
1,359,556	+				+0.0
1,359,556	+				+0.4
1,359,581	+				-1.2
1,359,585	+				+0.5
1,359,586	-				-1.4
1,359,609	+				+1.4
1,359,657	+				+0.8
1,359,657	+				+0.6
1,359,657	+				-0.7
1,359,658	-				+0.4
1,359,658	-				+1.7
1,359,658	-				+0.5
1,359,691	+				+0.2
1,359,692	-				+0.8
1,359,717	+				+3.2
1,359,718	-				+1.7
1,359,752	-				-0.2