Strain Fitness in Pantoea sp. MT58 around IAI47_05840

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,204,198	+		IAI47_05820	0.37	+0.6
1,204,198	+		IAI47_05820	0.37	+2.2
1,204,198	+		IAI47_05820	0.37	+1.2
1,204,199	-		IAI47_05820	0.37	-0.6
1,204,199	-		IAI47_05820	0.37	+0.1
1,204,210	+		IAI47_05820	0.41	-0.8
1,204,210	+		IAI47_05820	0.41	-1.1
1,204,211	-		IAI47_05820	0.42	+0.5
1,204,211	-		IAI47_05820	0.42	+0.2
1,204,211	-		IAI47_05820	0.42	+1.1
1,204,211	-		IAI47_05820	0.42	+2.6
1,204,213	+		IAI47_05820	0.42	+0.3
1,204,213	+		IAI47_05820	0.42	-1.8
1,204,213	+		IAI47_05820	0.42	-2.0
1,204,213	+		IAI47_05820	0.42	+0.6
1,204,213	+		IAI47_05820	0.42	-0.8
1,204,213	+		IAI47_05820	0.42	+1.5
1,204,214	-		IAI47_05820	0.43	-0.1
1,204,214	-		IAI47_05820	0.43	+1.1
1,204,214	-		IAI47_05820	0.43	+0.2
1,204,236	+		IAI47_05820	0.51	+1.0
1,204,236	+		IAI47_05820	0.51	+0.3
1,204,236	+		IAI47_05820	0.51	+0.9
1,204,237	-		IAI47_05820	0.52	+2.5
1,204,237	-		IAI47_05820	0.52	+1.5
1,204,237	-		IAI47_05820	0.52	-1.1
1,204,237	-		IAI47_05820	0.52	+2.0
1,204,237	-		IAI47_05820	0.52	+1.8
1,204,264	+		IAI47_05820	0.62	+0.8
1,204,264	+		IAI47_05820	0.62	-0.9
1,204,264	+		IAI47_05820	0.62	+0.7
1,204,264	+		IAI47_05820	0.62	+0.7
1,204,265	-		IAI47_05820	0.62	-2.5
1,204,265	-		IAI47_05820	0.62	+0.4
1,204,265	-		IAI47_05820	0.62	-0.2
1,204,291	-		IAI47_05820	0.72	+1.3
1,204,291	-		IAI47_05820	0.72	-0.2
1,204,313	+		IAI47_05820	0.80	+0.5
1,204,313	+		IAI47_05820	0.80	+1.7
1,204,313	+		IAI47_05820	0.80	+0.9
1,204,313	+		IAI47_05820	0.80	+2.5
1,204,313	+		IAI47_05820	0.80	-0.2
1,204,313	+		IAI47_05820	0.80	+1.1
1,204,313	+		IAI47_05820	0.80	+1.5
1,204,313	+		IAI47_05820	0.80	+1.8
1,204,314	-		IAI47_05820	0.81	+1.2
1,204,314	-		IAI47_05820	0.81	+0.3
1,204,314	-		IAI47_05820	0.81	-0.1
1,204,314	-		IAI47_05820	0.81	+0.8
1,204,314	-		IAI47_05820	0.81	-2.0
1,204,314	-		IAI47_05820	0.81	+1.5
1,204,314	-		IAI47_05820	0.81	-1.3
1,204,403	+		IAI47_05825	0.16	+0.9
1,204,403	+		IAI47_05825	0.16	+0.2
1,204,404	-		IAI47_05825	0.16	+1.1
1,204,404	-		IAI47_05825	0.16	+0.5
1,204,404	-		IAI47_05825	0.16	+1.7
1,204,404	-		IAI47_05825	0.16	+2.4
1,204,418	+		IAI47_05825	0.20	+1.5
1,204,470	-		IAI47_05825	0.34	-1.5
1,204,583	+		IAI47_05825	0.65	+1.5
1,204,583	+		IAI47_05825	0.65	+0.6
1,204,583	+		IAI47_05825	0.65	+0.5
1,204,614	+		IAI47_05825	0.73	-0.2
1,204,618	+		IAI47_05825	0.75	+2.0
1,204,619	-		IAI47_05825	0.75	+0.3
1,204,619	-		IAI47_05825	0.75	-2.1
1,204,711	+				+2.3
1,204,711	+				-0.8
1,204,711	+				-0.9
1,204,711	+				+0.7
1,204,712	-				-1.7
1,204,712	-				-0.1
1,204,712	-				+0.6
1,204,712	-				+2.2
1,204,712	-				+1.7
1,204,712	-				+1.5
1,204,719	+				-0.2
1,204,737	-				-0.8
1,204,737	-				+1.5
1,204,797	+				-2.4
1,204,797	+				+1.5
1,204,798	-				+0.5
1,204,798	-				+2.3
1,204,798	-				-0.8
1,204,798	-				-1.3
1,204,798	-				+0.4
1,204,839	+				+1.3
1,204,839	+				+0.2
1,204,839	+				+0.9
1,204,840	-				-0.6
1,204,840	-				+2.8
1,204,840	-				-1.1
1,204,840	-				+1.5
1,204,843	+				+0.6
1,204,843	+				+0.6
1,204,843	+				+0.4
1,204,843	+				+2.5
1,204,843	+				+0.6
1,204,844	-				+2.6
1,204,844	-				-1.3
1,204,844	-				+2.5
1,204,844	-				+2.2
1,204,844	-				+1.5
1,204,948	+		IAI47_05830	0.52	-0.1
1,204,948	+		IAI47_05830	0.52	+0.0
1,204,963	-		IAI47_05830	0.61	+0.8
1,204,963	-		IAI47_05830	0.61	-0.1
1,205,035	+				+2.0
1,205,035	+				-1.0
1,205,035	+				+2.1
1,205,035	+				-0.8
1,205,035	+				+1.4
1,205,036	-				-1.8
1,205,036	-				+2.5
1,205,036	-				+1.3
1,205,058	+		IAI47_05835	0.16	+0.1
1,205,058	+		IAI47_05835	0.16	-1.1
1,205,058	+		IAI47_05835	0.16	+0.7
1,205,058	+		IAI47_05835	0.16	-1.3
1,205,058	+		IAI47_05835	0.16	+1.5
1,205,058	+		IAI47_05835	0.16	+0.9
1,205,058	+		IAI47_05835	0.16	+0.5
1,205,058	+		IAI47_05835	0.16	-0.1
1,205,058	+		IAI47_05835	0.16	+2.5
1,205,058	+		IAI47_05835	0.16	-1.2
1,205,059	-		IAI47_05835	0.17	-0.4
1,205,059	-		IAI47_05835	0.17	-1.7
1,205,059	-		IAI47_05835	0.17	-1.7
1,205,059	-		IAI47_05835	0.17	-0.6
1,205,059	-		IAI47_05835	0.17	-1.8
1,205,103	-		IAI47_05835	0.39	-0.8
1,205,117	+		IAI47_05835	0.46	-0.6
1,205,117	+		IAI47_05835	0.46	-1.1
1,205,118	-		IAI47_05835	0.46	+0.5
1,205,118	-		IAI47_05835	0.46	-1.5
1,205,156	+		IAI47_05835	0.65	-3.2
1,205,156	+		IAI47_05835	0.65	-1.1
1,205,156	+		IAI47_05835	0.65	+0.6
1,205,156	+		IAI47_05835	0.65	+0.5
1,205,156	+		IAI47_05835	0.65	-2.0
1,205,156	+		IAI47_05835	0.65	+1.4
1,205,157	-		IAI47_05835	0.66	+0.7
1,205,157	-		IAI47_05835	0.66	+0.5
1,205,157	-		IAI47_05835	0.66	-1.5
1,205,176	+				+1.5
1,205,177	-		IAI47_05835	0.76	+0.8
1,205,209	+				-0.8
1,205,209	+				+0.7
1,205,209	+				+2.3
1,205,209	+				+2.4
1,205,209	+				-0.5
1,205,209	+				-1.1
1,205,209	+				+2.1
1,205,209	+				-0.7
1,205,209	+				-0.2
1,205,209	+				-1.5
1,205,210	-				-0.1
1,205,210	-				+1.0
1,205,210	-				-0.0
1,205,210	-				+1.8
1,205,210	-				+1.5
1,205,210	-				+3.3
1,205,210	-				+1.0
1,205,224	-				+0.9
1,205,264	+		IAI47_05840	0.16	-0.1
1,205,264	+		IAI47_05840	0.16	+1.3
1,205,265	-		IAI47_05840	0.16	+1.7
1,205,275	-		IAI47_05840	0.18	+1.6
1,205,291	+		IAI47_05840	0.22	-0.8
1,205,291	+		IAI47_05840	0.22	-2.2
1,205,292	-		IAI47_05840	0.22	-0.1
1,205,292	-		IAI47_05840	0.22	+0.5
1,205,292	-		IAI47_05840	0.22	-1.8
1,205,292	-		IAI47_05840	0.22	-1.1
1,205,340	-		IAI47_05840	0.33	+1.9
1,205,360	+		IAI47_05840	0.38	+0.9
1,205,360	+		IAI47_05840	0.38	+0.4
1,205,360	+		IAI47_05840	0.38	+0.8
1,205,361	-		IAI47_05840	0.38	+1.8
1,205,361	-		IAI47_05840	0.38	+0.8
1,205,361	-		IAI47_05840	0.38	+2.2
1,205,422	-		IAI47_05840	0.52	+1.1
1,205,422	-		IAI47_05840	0.52	-0.1
1,205,422	-		IAI47_05840	0.52	-0.1
1,205,477	+		IAI47_05840	0.65	+0.9
1,205,477	+		IAI47_05840	0.65	-0.3
1,205,477	+		IAI47_05840	0.65	-1.2
1,205,477	+		IAI47_05840	0.65	+1.9
1,205,477	+		IAI47_05840	0.65	-0.1
1,205,477	+		IAI47_05840	0.65	-0.6
1,205,477	+		IAI47_05840	0.65	+0.5
1,205,478	-		IAI47_05840	0.65	+0.5
1,205,478	-		IAI47_05840	0.65	+0.5
1,205,478	-		IAI47_05840	0.65	+1.8
1,205,528	+		IAI47_05840	0.76	+2.2
1,205,528	+		IAI47_05840	0.76	+0.4
1,205,529	-		IAI47_05840	0.76	+1.6
1,205,529	-		IAI47_05840	0.76	+1.5
1,205,622	+				-0.3
1,205,622	+				-0.5
1,205,622	+				-0.2
1,205,622	+				+0.5
1,205,622	+				+0.8
1,205,622	+				-0.3
1,205,623	-				+3.2
1,205,623	-				-1.8
1,205,623	-				+0.2
1,205,623	-				+1.2
1,205,623	-				+0.9
1,205,623	-				+1.8
1,205,633	+				+3.1
1,205,633	+				-0.5
1,205,633	+				-1.3
1,205,634	-				+0.4
1,205,634	-				-0.8
1,205,638	+				+0.5
1,205,639	-				+1.7
1,205,723	-		IAI47_05845	0.31	+1.8
1,205,736	-		IAI47_05845	0.36	+0.3
1,205,768	+		IAI47_05845	0.46	-0.5
1,205,780	+		IAI47_05845	0.50	+1.0
1,205,781	-		IAI47_05845	0.50	+0.8
1,205,814	+		IAI47_05845	0.61	-2.9
1,205,814	+		IAI47_05845	0.61	-0.3
1,205,815	-		IAI47_05845	0.62	+0.2
1,205,815	-		IAI47_05845	0.62	+2.8
1,205,815	-		IAI47_05845	0.62	+1.7
1,205,815	-		IAI47_05845	0.62	+0.6
1,205,859	+		IAI47_05845	0.76	+1.1
1,205,859	+		IAI47_05845	0.76	-1.3
1,205,859	+		IAI47_05845	0.76	-1.7
1,205,859	+		IAI47_05845	0.76	+1.0
1,205,859	+		IAI47_05845	0.76	+0.5
1,205,859	+		IAI47_05845	0.76	-0.6
1,205,859	+		IAI47_05845	0.76	+0.2
1,205,860	-		IAI47_05845	0.77	+0.7
1,205,860	-		IAI47_05845	0.77	+1.5
1,205,860	-		IAI47_05845	0.77	+3.4
1,205,880	-		IAI47_05845	0.83	-2.1
1,205,897	-		IAI47_05845	0.89	+1.6
1,205,936	+				+1.2
1,205,936	+				+1.3
1,205,937	-				-1.1
1,206,082	+				+0.0
1,206,082	+				+0.9
1,206,140	+				-2.1
1,206,140	+				+1.5
1,206,141	-				-1.1
1,206,141	-				-1.3
1,206,141	-				+2.7
1,206,141	-				-1.8
1,206,165	+				+1.0
1,206,165	+				+1.9
1,206,165	+				+2.3
1,206,165	+				-2.0
1,206,165	+				+0.4
1,206,165	+				+1.2
1,206,165	+				+2.2
1,206,166	-				+2.9
1,206,166	-				+1.1
1,206,166	-				+1.2
1,206,166	-				+1.7
1,206,166	-				+0.7
1,206,166	-				-2.2
1,206,166	-				+0.6
1,206,166	-				-1.6
1,206,166	-				+0.8
1,206,166	-				-2.8
1,206,166	-				+1.7
1,206,166	-				+0.3
1,206,166	-				+0.5
1,206,166	-				+1.6
1,206,195	-				+0.5
1,206,195	-				-3.2
1,206,204	+				-1.7
1,206,205	-				+0.1
1,206,205	-				+1.5
1,206,210	+				+0.5
1,206,210	+				+0.9
1,206,210	+				+0.6
1,206,211	-				+1.1
1,206,211	-				+3.3
1,206,211	-				+2.8
1,206,211	-				+2.3
1,206,219	+				+0.8
1,206,219	+				-0.8
1,206,220	-				+1.3
1,206,228	+				-1.1
1,206,228	+				+0.9
1,206,229	-		IAI47_05850	0.10	+2.1
1,206,229	-		IAI47_05850	0.10	+1.5
1,206,229	-		IAI47_05850	0.10	+0.3
1,206,229	-		IAI47_05850	0.10	-0.8
1,206,229	-		IAI47_05850	0.10	+0.5
1,206,229	-		IAI47_05850	0.10	+3.7
1,206,231	+		IAI47_05850	0.11	+1.4
1,206,232	-		IAI47_05850	0.12	+2.2
1,206,256	-		IAI47_05850	0.25	-0.5
1,206,310	+		IAI47_05850	0.56	+0.6
1,206,311	-		IAI47_05850	0.56	-0.2
1,206,329	+		IAI47_05850	0.67	+1.4
1,206,329	+		IAI47_05850	0.67	-1.1
1,206,386	-				-0.1
1,206,386	-				+1.0
1,206,386	-				+1.9
1,206,451	+		IAI47_05855	0.12	+1.4
1,206,451	+		IAI47_05855	0.12	-0.5
1,206,451	+		IAI47_05855	0.12	-1.1
1,206,452	-		IAI47_05855	0.12	-1.3
1,206,582	+		IAI47_05855	0.35	+1.1
1,206,623	+		IAI47_05855	0.42	+1.2
1,206,623	+		IAI47_05855	0.42	+0.7
1,206,623	+		IAI47_05855	0.42	+2.7
1,206,623	+		IAI47_05855	0.42	-1.1
1,206,624	-		IAI47_05855	0.42	+2.3
1,206,624	-		IAI47_05855	0.42	-0.1
1,206,624	-		IAI47_05855	0.42	+1.4
1,206,624	-		IAI47_05855	0.42	-0.2
1,206,624	-		IAI47_05855	0.42	+2.8