Strain Fitness in Pantoea sp. MT58 around IAI47_05590

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,175,600	+				+0.8
1,175,600	+				+2.1
1,175,600	+				+0.8
1,175,601	-				-0.4
1,175,601	-				+0.1
1,175,601	-				-2.4
1,175,601	-				+0.6
1,175,601	-				-1.5
1,175,601	-				+0.9
1,175,665	+		IAI47_05585	0.10	+1.4
1,175,665	+		IAI47_05585	0.10	-0.0
1,175,665	+		IAI47_05585	0.10	+1.9
1,175,665	+		IAI47_05585	0.10	+0.9
1,175,665	+		IAI47_05585	0.10	+0.8
1,175,665	+		IAI47_05585	0.10	+0.5
1,175,666	-		IAI47_05585	0.10	-0.0
1,175,670	+		IAI47_05585	0.11	+1.2
1,175,670	+		IAI47_05585	0.11	+3.1
1,175,671	-		IAI47_05585	0.11	+1.1
1,175,671	-		IAI47_05585	0.11	+0.1
1,175,750	-		IAI47_05585	0.19	-0.5
1,175,814	-		IAI47_05585	0.25	-2.4
1,175,814	-		IAI47_05585	0.25	-0.3
1,175,814	-		IAI47_05585	0.25	-0.1
1,175,829	+		IAI47_05585	0.26	-1.8
1,175,829	+		IAI47_05585	0.26	+1.5
1,175,829	+		IAI47_05585	0.26	-0.8
1,175,829	+		IAI47_05585	0.26	-2.1
1,175,830	-		IAI47_05585	0.26	-0.1
1,175,830	-		IAI47_05585	0.26	-0.9
1,175,833	+		IAI47_05585	0.27	+1.3
1,175,833	+		IAI47_05585	0.27	-0.1
1,175,834	-		IAI47_05585	0.27	+0.3
1,175,844	+		IAI47_05585	0.28	+2.0
1,175,844	+		IAI47_05585	0.28	+1.9
1,175,844	+		IAI47_05585	0.28	+1.5
1,175,845	-		IAI47_05585	0.28	+0.8
1,175,845	-		IAI47_05585	0.28	-1.1
1,175,845	-		IAI47_05585	0.28	-0.7
1,175,845	-		IAI47_05585	0.28	-0.1
1,175,845	-		IAI47_05585	0.28	-1.2
1,175,895	+		IAI47_05585	0.33	-0.6
1,175,895	+		IAI47_05585	0.33	-0.8
1,175,895	+		IAI47_05585	0.33	-0.5
1,175,896	-		IAI47_05585	0.33	-1.0
1,175,896	-		IAI47_05585	0.33	+0.4
1,175,896	-		IAI47_05585	0.33	-2.1
1,175,947	+		IAI47_05585	0.38	+0.2
1,175,948	-		IAI47_05585	0.38	-0.8
1,175,959	-		IAI47_05585	0.39	-0.8
1,176,038	+		IAI47_05585	0.47	-2.0
1,176,038	+		IAI47_05585	0.47	+0.8
1,176,038	+		IAI47_05585	0.47	-0.4
1,176,038	+		IAI47_05585	0.47	-2.2
1,176,039	-		IAI47_05585	0.47	+0.5
1,176,039	-		IAI47_05585	0.47	-0.1
1,176,041	+		IAI47_05585	0.47	+1.5
1,176,041	+		IAI47_05585	0.47	+2.0
1,176,042	-		IAI47_05585	0.47	+0.3
1,176,042	-		IAI47_05585	0.47	-1.1
1,176,056	+		IAI47_05585	0.48	+1.5
1,176,057	-		IAI47_05585	0.48	-2.1
1,176,160	+		IAI47_05585	0.59	-0.1
1,176,160	+		IAI47_05585	0.59	+0.1
1,176,161	-		IAI47_05585	0.59	+0.8
1,176,161	-		IAI47_05585	0.59	-2.3
1,176,161	-		IAI47_05585	0.59	-1.1
1,176,174	+		IAI47_05585	0.60	+1.5
1,176,174	+		IAI47_05585	0.60	-0.2
1,176,198	+		IAI47_05585	0.62	-2.2
1,176,342	+		IAI47_05585	0.76	-0.9
1,176,342	+		IAI47_05585	0.76	+0.9
1,176,416	+		IAI47_05585	0.83	+0.1
1,176,416	+		IAI47_05585	0.83	-1.5
1,176,417	-		IAI47_05585	0.83	-1.3
1,176,417	-		IAI47_05585	0.83	-1.3
1,176,417	-		IAI47_05585	0.83	+1.5
1,176,417	-		IAI47_05585	0.83	+0.5
1,176,417	-		IAI47_05585	0.83	+1.1
1,176,417	-		IAI47_05585	0.83	-2.0
1,176,417	-		IAI47_05585	0.83	+1.0
1,176,417	-		IAI47_05585	0.83	+0.5
1,176,417	-		IAI47_05585	0.83	+0.8
1,176,417	-		IAI47_05585	0.83	+0.7
1,176,417	-		IAI47_05585	0.83	+0.1
1,176,417	-		IAI47_05585	0.83	+0.5
1,176,417	-		IAI47_05585	0.83	-0.9
1,176,417	-		IAI47_05585	0.83	-1.5
1,176,417	-		IAI47_05585	0.83	-0.1
1,176,417	-		IAI47_05585	0.83	-0.6
1,176,420	+		IAI47_05585	0.84	-0.8
1,176,420	+		IAI47_05585	0.84	+2.0
1,176,420	+		IAI47_05585	0.84	+0.5
1,176,433	+		IAI47_05585	0.85	-1.9
1,176,433	+		IAI47_05585	0.85	-0.1
1,176,433	+		IAI47_05585	0.85	-2.8
1,176,434	-		IAI47_05585	0.85	-0.8
1,176,434	-		IAI47_05585	0.85	+0.0
1,176,434	-		IAI47_05585	0.85	+1.2
1,176,434	-		IAI47_05585	0.85	-1.8
1,176,434	-		IAI47_05585	0.85	-0.5
1,176,434	-		IAI47_05585	0.85	+1.5
1,176,434	-		IAI47_05585	0.85	+0.9
1,176,440	+		IAI47_05585	0.86	-0.1
1,176,441	-		IAI47_05585	0.86	+0.9
1,176,450	+		IAI47_05585	0.87	+0.8
1,176,450	+		IAI47_05585	0.87	-0.8
1,176,451	-		IAI47_05585	0.87	-3.9
1,176,465	+		IAI47_05585	0.88	-0.1
1,176,465	+		IAI47_05585	0.88	+0.4
1,176,465	+		IAI47_05585	0.88	-0.7
1,176,465	+		IAI47_05585	0.88	-2.3
1,176,465	+		IAI47_05585	0.88	+1.4
1,176,465	+		IAI47_05585	0.88	-0.4
1,176,465	+		IAI47_05585	0.88	+0.7
1,176,465	+		IAI47_05585	0.88	+0.2
1,176,465	+		IAI47_05585	0.88	-2.1
1,176,465	+		IAI47_05585	0.88	-0.8
1,176,466	-		IAI47_05585	0.88	+1.3
1,176,466	-		IAI47_05585	0.88	-0.8
1,176,466	-		IAI47_05585	0.88	-0.2
1,176,466	-		IAI47_05585	0.88	+0.4
1,176,466	-		IAI47_05585	0.88	-1.1
1,176,466	-		IAI47_05585	0.88	+0.2
1,176,466	-		IAI47_05585	0.88	-0.5
1,176,530	+				+0.5
1,176,531	-				-1.4
1,176,531	-				-2.1
1,176,580	+				-0.1
1,176,581	-				-0.1
1,176,581	-				+0.9
1,176,586	+				+0.5
1,176,586	+				-2.3
1,176,586	+				+1.5
1,176,586	+				-0.3
1,176,586	+				+0.5
1,176,586	+				-1.1
1,176,587	-				-1.3
1,176,664	+				-0.0
1,176,664	+				+1.3
1,176,665	-				+0.0
1,176,665	-				+0.4
1,176,665	-				-0.9
1,176,665	-				+0.6
1,176,762	+		IAI47_05590	0.11	+3.0
1,176,762	+		IAI47_05590	0.11	-2.0
1,176,762	+		IAI47_05590	0.11	+0.5
1,176,794	-		IAI47_05590	0.13	-0.8
1,176,864	+		IAI47_05590	0.17	+1.1
1,176,865	-		IAI47_05590	0.17	+0.2
1,176,865	-		IAI47_05590	0.17	-0.4
1,176,934	-		IAI47_05590	0.22	-1.8
1,176,934	-		IAI47_05590	0.22	+1.5
1,176,957	+		IAI47_05590	0.23	+0.5
1,176,957	+		IAI47_05590	0.23	-1.3
1,177,286	+		IAI47_05590	0.44	+1.3
1,177,287	-		IAI47_05590	0.44	+2.6
1,177,381	+		IAI47_05590	0.50	+4.0
1,177,381	+		IAI47_05590	0.50	+2.5
1,177,387	-		IAI47_05590	0.50	-2.0
1,177,387	-		IAI47_05590	0.50	+0.5
1,177,459	-		IAI47_05590	0.54	+0.3
1,177,459	-		IAI47_05590	0.54	-2.0
1,177,459	-		IAI47_05590	0.54	-2.1
1,177,614	+		IAI47_05590	0.64	-1.2
1,177,614	+		IAI47_05590	0.64	-0.3
1,177,614	+		IAI47_05590	0.64	-0.1
1,177,614	+		IAI47_05590	0.64	+1.0
1,177,615	-		IAI47_05590	0.64	-0.3
1,177,691	-		IAI47_05590	0.69	+0.5
1,177,714	-		IAI47_05590	0.70	+0.7
1,177,742	+		IAI47_05590	0.72	-0.8
1,177,742	+		IAI47_05590	0.72	-0.4
1,177,764	+		IAI47_05590	0.73	+1.2
1,177,764	+		IAI47_05590	0.73	+1.3
1,177,765	-		IAI47_05590	0.74	-0.5
1,177,765	-		IAI47_05590	0.74	+2.0
1,177,855	-		IAI47_05590	0.79	+1.5
1,177,903	-		IAI47_05590	0.82	+0.1
1,177,903	-		IAI47_05590	0.82	+0.8
1,177,903	-		IAI47_05590	0.82	+0.9
1,177,926	+		IAI47_05590	0.84	-0.6
1,177,998	-		IAI47_05590	0.88	-1.3
1,178,007	+		IAI47_05590	0.89	+0.9
1,178,008	-		IAI47_05590	0.89	+1.4
1,178,016	+		IAI47_05590	0.89	-3.1
1,178,016	+		IAI47_05590	0.89	-0.5
1,178,017	-		IAI47_05590	0.89	-0.5
1,178,110	-				-0.5
1,178,110	-				+1.1
1,178,134	+				+0.9
1,178,134	+				+0.0
1,178,134	+				-1.8
1,178,134	+				-2.1
1,178,135	-				-1.4
1,178,135	-				+0.6
1,178,135	-				+0.5
1,178,146	-				+1.5
1,178,179	-				+0.6
1,178,188	+				-0.1
1,178,188	+				+2.8
1,178,240	+				-0.8
1,178,241	-				-0.4
1,178,246	+				+0.4
1,178,246	+				+1.3
1,178,247	-				+0.4
1,178,263	+				+0.5
1,178,277	-				+0.6
1,178,285	+				-0.5
1,178,306	+				-1.1
1,178,307	-				+0.2
1,178,311	+				+1.5
1,178,311	+				+0.6
1,178,311	+				+0.4
1,178,311	+				-0.9
1,178,311	+				-0.8
1,178,312	-				-0.1
1,178,312	-				+1.9
1,178,312	-				-0.0
1,178,312	-				-2.5
1,178,312	-				+1.5
1,178,312	-				-0.1
1,178,336	+				-0.5
1,178,414	+				-0.6
1,178,576	-		IAI47_05595	0.31	+0.7
1,178,576	-		IAI47_05595	0.31	-0.8
1,178,598	-		IAI47_05595	0.33	+1.5
1,178,648	+		IAI47_05595	0.40	+0.7
1,178,649	-		IAI47_05595	0.40	+2.2
1,178,651	+		IAI47_05595	0.40	+0.1
1,178,652	-		IAI47_05595	0.40	+0.5
1,178,652	-		IAI47_05595	0.40	+1.2
1,178,652	-		IAI47_05595	0.40	+1.3
1,178,652	-		IAI47_05595	0.40	-1.5
1,178,699	+		IAI47_05595	0.46	+0.4
1,178,700	-		IAI47_05595	0.47	+1.7
1,178,745	-		IAI47_05595	0.52	+0.4
1,178,766	+		IAI47_05595	0.55	-0.8
1,178,766	+		IAI47_05595	0.55	-2.2
1,178,767	-		IAI47_05595	0.55	-1.7
1,178,767	-		IAI47_05595	0.55	+0.9
1,178,771	+		IAI47_05595	0.56	+1.2
1,178,771	+		IAI47_05595	0.56	-0.7
1,178,771	+		IAI47_05595	0.56	-2.1
1,178,771	+		IAI47_05595	0.56	-1.1
1,178,771	+		IAI47_05595	0.56	-2.5
1,178,771	+		IAI47_05595	0.56	-0.1
1,178,772	-		IAI47_05595	0.56	+0.5
1,178,887	+		IAI47_05595	0.71	-0.1
1,178,888	-		IAI47_05595	0.71	-1.7
1,178,894	+		IAI47_05595	0.71	+2.1
1,178,894	+		IAI47_05595	0.71	-1.5
1,178,895	-		IAI47_05595	0.72	-0.3
1,178,957	+		IAI47_05595	0.79	+1.5
1,178,957	+		IAI47_05595	0.79	+0.9
1,178,957	+		IAI47_05595	0.79	-0.2
1,178,958	-		IAI47_05595	0.80	+1.1
1,178,958	-		IAI47_05595	0.80	+1.1
1,178,958	-		IAI47_05595	0.80	-2.3
1,178,978	+		IAI47_05595	0.82	-0.5
1,179,007	+		IAI47_05595	0.86	+0.8
1,179,008	-		IAI47_05595	0.86	+0.5
1,179,071	+				-1.7
1,179,071	+				+0.5
1,179,072	-				+0.4
1,179,114	+				-1.5
1,179,115	-				-1.7
1,179,115	-				-2.4
1,179,115	-				-0.2
1,179,120	+				-0.5
1,179,120	+				-2.1
1,179,121	-				-0.5
1,179,121	-				-0.1
1,179,153	-				-1.6