Strain Fitness in Pantoea sp. MT58 around IAI47_05575

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,173,079	+				-1.7
1,173,079	+				-0.7
1,173,080	-				+0.3
1,173,080	-				+0.6
1,173,133	+				-0.8
1,173,133	+				+0.0
1,173,133	+				-1.6
1,173,133	+				-1.5
1,173,133	+				+0.5
1,173,133	+				-0.1
1,173,134	-				-2.6
1,173,134	-				-0.8
1,173,162	-				+1.5
1,173,189	+				-0.2
1,173,189	+				-0.2
1,173,189	+				-1.8
1,173,293	+				-1.1
1,173,293	+				-2.2
1,173,293	+				+1.4
1,173,294	-				+1.2
1,173,294	-				+0.9
1,173,319	-				-1.4
1,173,376	+				+1.5
1,173,376	+				+2.0
1,173,377	-				+1.1
1,173,377	-				+0.5
1,173,386	+				-1.3
1,173,387	-				+0.2
1,173,387	-				+0.9
1,173,391	+				-0.3
1,173,391	+				-0.1
1,173,392	-				+1.5
1,173,454	+		IAI47_05570	0.19	-1.6
1,173,533	+		IAI47_05570	0.34	+1.5
1,173,534	-		IAI47_05570	0.34	+0.2
1,173,611	+		IAI47_05570	0.49	-0.1
1,173,633	+		IAI47_05570	0.53	-0.2
1,173,633	+		IAI47_05570	0.53	+0.3
1,173,633	+		IAI47_05570	0.53	+0.2
1,173,633	+		IAI47_05570	0.53	+1.2
1,173,633	+		IAI47_05570	0.53	-0.1
1,173,633	+		IAI47_05570	0.53	-2.1
1,173,633	+		IAI47_05570	0.53	-1.1
1,173,634	-		IAI47_05570	0.53	+0.1
1,173,634	-		IAI47_05570	0.53	+0.2
1,173,635	+		IAI47_05570	0.54	+0.3
1,173,635	+		IAI47_05570	0.54	+1.5
1,173,635	+		IAI47_05570	0.54	+1.5
1,173,635	+		IAI47_05570	0.54	+1.5
1,173,635	+		IAI47_05570	0.54	-0.6
1,173,635	+		IAI47_05570	0.54	-1.3
1,173,635	+		IAI47_05570	0.54	+2.0
1,173,635	+		IAI47_05570	0.54	-0.1
1,173,635	+		IAI47_05570	0.54	-0.3
1,173,635	+		IAI47_05570	0.54	+0.5
1,173,636	-		IAI47_05570	0.54	-0.5
1,173,636	-		IAI47_05570	0.54	-0.2
1,173,636	-		IAI47_05570	0.54	+0.5
1,173,636	-		IAI47_05570	0.54	-0.2
1,173,636	-		IAI47_05570	0.54	-0.8
1,173,636	-		IAI47_05570	0.54	+0.5
1,173,636	-		IAI47_05570	0.54	+0.3
1,173,636	-		IAI47_05570	0.54	+1.7
1,173,666	+		IAI47_05570	0.59	-0.5
1,173,666	+		IAI47_05570	0.59	-3.5
1,173,667	-		IAI47_05570	0.60	-0.8
1,173,667	-		IAI47_05570	0.60	-0.5
1,173,812	+		IAI47_05570	0.87	-0.1
1,173,813	-		IAI47_05570	0.87	+1.0
1,173,813	-		IAI47_05570	0.87	+1.5
1,173,816	+		IAI47_05570	0.88	-0.1
1,173,816	+		IAI47_05570	0.88	-0.9
1,173,816	+		IAI47_05570	0.88	-0.5
1,173,816	+		IAI47_05570	0.88	-0.3
1,173,817	-		IAI47_05570	0.88	-0.5
1,173,817	-		IAI47_05570	0.88	-1.5
1,173,817	-		IAI47_05570	0.88	-0.4
1,173,817	-		IAI47_05570	0.88	-0.5
1,173,921	+				+3.2
1,173,921	+				+1.5
1,173,921	+				+0.5
1,173,921	+				+0.6
1,173,922	-				-2.2
1,173,922	-				-0.1
1,173,922	-				-0.4
1,173,922	-				-0.4
1,173,976	+				+1.5
1,173,977	-				-2.0
1,173,977	-				+0.5
1,173,977	-				+1.9
1,173,980	+				-2.1
1,173,981	-				-0.7
1,173,981	-				+3.1
1,174,004	+				-2.8
1,174,042	+				+0.4
1,174,042	+				-1.3
1,174,042	+				-1.5
1,174,042	+				-1.5
1,174,043	-				+0.5
1,174,050	+				+2.2
1,174,051	-				-0.8
1,174,051	-				-1.7
1,174,106	+				-1.2
1,174,106	+				-0.5
1,174,107	-				+0.5
1,174,107	-				+0.0
1,174,107	-				+1.3
1,174,204	-		IAI47_05575	0.17	+0.2
1,174,254	+		IAI47_05575	0.21	-1.3
1,174,254	+		IAI47_05575	0.21	+2.2
1,174,254	+		IAI47_05575	0.21	+2.7
1,174,254	+		IAI47_05575	0.21	+1.8
1,174,255	-		IAI47_05575	0.21	-0.2
1,174,255	-		IAI47_05575	0.21	+3.0
1,174,255	-		IAI47_05575	0.21	+0.9
1,174,267	-		IAI47_05575	0.22	-0.1
1,174,369	+		IAI47_05575	0.30	+0.2
1,174,370	-		IAI47_05575	0.30	+0.5
1,174,400	+		IAI47_05575	0.33	+0.7
1,174,400	+		IAI47_05575	0.33	-2.1
1,174,400	+		IAI47_05575	0.33	+1.3
1,174,400	+		IAI47_05575	0.33	-2.0
1,174,400	+		IAI47_05575	0.33	+0.6
1,174,401	-		IAI47_05575	0.33	-1.3
1,174,401	-		IAI47_05575	0.33	-0.6
1,174,401	-		IAI47_05575	0.33	-1.8
1,174,404	+		IAI47_05575	0.33	-0.3
1,174,404	+				+0.8
1,174,404	+		IAI47_05575	0.33	+0.1
1,174,404	+		IAI47_05575	0.33	+1.2
1,174,404	+		IAI47_05575	0.33	+0.8
1,174,405	-		IAI47_05575	0.33	-1.5
1,174,405	-		IAI47_05575	0.33	+1.0
1,174,405	-		IAI47_05575	0.33	+1.3
1,174,405	-		IAI47_05575	0.33	+0.2
1,174,405	-		IAI47_05575	0.33	-0.1
1,174,405	-		IAI47_05575	0.33	-1.5
1,174,405	-		IAI47_05575	0.33	+0.2
1,174,487	+		IAI47_05575	0.40	-3.1
1,174,487	+		IAI47_05575	0.40	-0.8
1,174,487	+		IAI47_05575	0.40	+0.5
1,174,488	-		IAI47_05575	0.40	+0.4
1,174,602	+		IAI47_05575	0.49	+0.5
1,174,603	-		IAI47_05575	0.49	-1.7
1,174,603	-		IAI47_05575	0.49	-1.7
1,174,603	-		IAI47_05575	0.49	-0.1
1,174,609	+		IAI47_05575	0.50	-4.0
1,174,609	+		IAI47_05575	0.50	+1.1
1,174,609	+		IAI47_05575	0.50	-1.7
1,174,610	-		IAI47_05575	0.50	-0.1
1,174,610	-		IAI47_05575	0.50	-1.1
1,174,610	-		IAI47_05575	0.50	+0.8
1,174,632	+		IAI47_05575	0.52	+0.4
1,174,632	+		IAI47_05575	0.52	+1.2
1,174,633	-		IAI47_05575	0.52	-1.1
1,174,633	-		IAI47_05575	0.52	+0.7
1,174,647	+		IAI47_05575	0.53	-0.8
1,174,648	-		IAI47_05575	0.53	-1.1
1,174,648	-		IAI47_05575	0.53	+1.5
1,174,648	-		IAI47_05575	0.53	-1.2
1,174,648	-		IAI47_05575	0.53	+0.7
1,174,673	+		IAI47_05575	0.55	+1.6
1,174,731	+		IAI47_05575	0.60	-0.1
1,174,731	+		IAI47_05575	0.60	-2.8
1,174,732	-		IAI47_05575	0.60	+0.5
1,174,732	-		IAI47_05575	0.60	+1.5
1,174,732	-		IAI47_05575	0.60	-0.5
1,174,732	-		IAI47_05575	0.60	-0.5
1,174,732	-		IAI47_05575	0.60	-2.1
1,174,769	+		IAI47_05575	0.63	-0.2
1,174,772	+		IAI47_05575	0.63	-1.1
1,174,772	+		IAI47_05575	0.63	+0.2
1,174,772	+		IAI47_05575	0.63	+1.0
1,174,773	-		IAI47_05575	0.63	+1.4
1,174,773	-		IAI47_05575	0.63	+0.6
1,174,773	-		IAI47_05575	0.63	+0.5
1,174,773	-		IAI47_05575	0.63	-0.1
1,174,773	-		IAI47_05575	0.63	-1.8
1,174,809	+		IAI47_05575	0.66	+0.7
1,174,809	+		IAI47_05575	0.66	-2.8
1,174,809	+		IAI47_05575	0.66	+0.3
1,174,818	+		IAI47_05575	0.67	+1.9
1,174,818	+		IAI47_05575	0.67	+0.5
1,174,819	-		IAI47_05575	0.67	-0.5
1,174,903	-		IAI47_05575	0.74	-0.1
1,174,903	-		IAI47_05575	0.74	-1.3
1,174,903	-		IAI47_05575	0.74	+1.3
1,174,904	+		IAI47_05575	0.74	+0.7
1,174,904	+		IAI47_05575	0.74	+0.7
1,174,904	+		IAI47_05575	0.74	-2.4
1,174,904	+		IAI47_05575	0.74	+0.6
1,174,980	+		IAI47_05575	0.80	+0.1
1,174,980	+		IAI47_05575	0.80	-2.6
1,174,980	+		IAI47_05575	0.80	+1.5
1,174,981	-		IAI47_05575	0.80	-2.4
1,174,981	-		IAI47_05575	0.80	-0.0
1,174,981	-		IAI47_05575	0.80	-1.3
1,174,981	-		IAI47_05575	0.80	-0.7
1,174,981	-		IAI47_05575	0.80	-0.6
1,175,007	+		IAI47_05575	0.82	-2.3
1,175,007	+		IAI47_05575	0.82	+0.4
1,175,007	+		IAI47_05575	0.82	-0.4
1,175,007	+		IAI47_05575	0.82	+0.5
1,175,007	+		IAI47_05575	0.82	-1.8
1,175,007	+		IAI47_05575	0.82	+1.2
1,175,008	-		IAI47_05575	0.82	-1.1
1,175,008	-		IAI47_05575	0.82	-0.4
1,175,008	-		IAI47_05575	0.82	+0.5
1,175,008	-		IAI47_05575	0.82	+1.8
1,175,008	-		IAI47_05575	0.82	+3.7
1,175,036	+		IAI47_05575	0.84	+0.9
1,175,042	+		IAI47_05575	0.85	-2.0
1,175,042	+		IAI47_05575	0.85	-1.7
1,175,042	+		IAI47_05575	0.85	-2.0
1,175,042	+		IAI47_05575	0.85	+0.2
1,175,042	+		IAI47_05575	0.85	+1.2
1,175,042	+		IAI47_05575	0.85	+1.2
1,175,042	+		IAI47_05575	0.85	-0.6
1,175,042	+		IAI47_05575	0.85	-1.7
1,175,043	-		IAI47_05575	0.85	-2.4
1,175,043	-		IAI47_05575	0.85	+1.3
1,175,043	-		IAI47_05575	0.85	-1.1
1,175,043	-		IAI47_05575	0.85	+0.9
1,175,094	+		IAI47_05575	0.89	+0.8
1,175,094	+		IAI47_05575	0.89	-1.3
1,175,141	+				+2.2
1,175,141	+				+3.1
1,175,141	+				-1.3
1,175,141	+				+1.4
1,175,165	+				+0.5
1,175,165	+				-0.3
1,175,166	-				-0.6
1,175,166	-				+3.5
1,175,166	-				+0.8
1,175,192	-				-2.2
1,175,192	-				-1.1
1,175,281	+				+2.0
1,175,281	+				-2.5
1,175,281	+				+0.1
1,175,281	+				-1.3
1,175,282	-				-0.3
1,175,282	-				+0.8
1,175,317	-		IAI47_05580	0.49	-0.9
1,175,332	-		IAI47_05580	0.69	-2.0
1,175,347	+				+2.1
1,175,347	+				-0.6
1,175,347	+				+3.8
1,175,347	+				-1.7
1,175,348	-				+0.1
1,175,348	-				-2.4
1,175,348	-				+1.5
1,175,377	-				-1.5
1,175,442	-				+1.2
1,175,442	-				+0.2
1,175,473	+				+0.1
1,175,474	-				+0.9
1,175,474	-				-0.8
1,175,474	-				-2.8
1,175,474	-				-1.3
1,175,474	-				+0.9
1,175,499	-				+0.9
1,175,503	+				+0.2
1,175,504	-				+0.3
1,175,529	-				+0.9
1,175,529	-				-1.5
1,175,544	+				+0.4
1,175,555	+				-0.4
1,175,556	+				-1.3
1,175,556	+				+0.9
1,175,556	+				-2.0
1,175,556	+				-0.1
1,175,556	+				+0.5
1,175,557	-				-0.6
1,175,600	+				+0.8
1,175,600	+				+2.1
1,175,600	+				+0.8
1,175,601	-				-0.4
1,175,601	-				+0.1
1,175,601	-				-2.4
1,175,601	-				+0.6
1,175,601	-				-1.5
1,175,601	-				+0.9
1,175,665	+		IAI47_05585	0.10	+1.4
1,175,665	+		IAI47_05585	0.10	-0.0
1,175,665	+		IAI47_05585	0.10	+1.9
1,175,665	+		IAI47_05585	0.10	+0.9
1,175,665	+		IAI47_05585	0.10	+0.8
1,175,665	+		IAI47_05585	0.10	+0.5
1,175,666	-		IAI47_05585	0.10	-0.0
1,175,670	+		IAI47_05585	0.11	+1.2
1,175,670	+		IAI47_05585	0.11	+3.1
1,175,671	-		IAI47_05585	0.11	+1.1
1,175,671	-		IAI47_05585	0.11	+0.1
1,175,750	-		IAI47_05585	0.19	-0.5
1,175,814	-		IAI47_05585	0.25	-2.4
1,175,814	-		IAI47_05585	0.25	-0.3
1,175,814	-		IAI47_05585	0.25	-0.1
1,175,829	+		IAI47_05585	0.26	-1.8
1,175,829	+		IAI47_05585	0.26	+1.5
1,175,829	+		IAI47_05585	0.26	-0.8
1,175,829	+		IAI47_05585	0.26	-2.1
1,175,830	-		IAI47_05585	0.26	-0.1
1,175,830	-		IAI47_05585	0.26	-0.9
1,175,833	+		IAI47_05585	0.27	+1.3
1,175,833	+		IAI47_05585	0.27	-0.1
1,175,834	-		IAI47_05585	0.27	+0.3
1,175,844	+		IAI47_05585	0.28	+2.0
1,175,844	+		IAI47_05585	0.28	+1.9
1,175,844	+		IAI47_05585	0.28	+1.5
1,175,845	-		IAI47_05585	0.28	+0.8
1,175,845	-		IAI47_05585	0.28	-1.1
1,175,845	-		IAI47_05585	0.28	-0.7
1,175,845	-		IAI47_05585	0.28	-0.1
1,175,845	-		IAI47_05585	0.28	-1.2
1,175,895	+		IAI47_05585	0.33	-0.6
1,175,895	+		IAI47_05585	0.33	-0.8
1,175,895	+		IAI47_05585	0.33	-0.5
1,175,896	-		IAI47_05585	0.33	-1.0
1,175,896	-		IAI47_05585	0.33	+0.4
1,175,896	-		IAI47_05585	0.33	-2.1
1,175,947	+		IAI47_05585	0.38	+0.2
1,175,948	-		IAI47_05585	0.38	-0.8
1,175,959	-		IAI47_05585	0.39	-0.8
1,176,038	+		IAI47_05585	0.47	-2.0
1,176,038	+		IAI47_05585	0.47	+0.8
1,176,038	+		IAI47_05585	0.47	-0.4
1,176,038	+		IAI47_05585	0.47	-2.2
1,176,039	-		IAI47_05585	0.47	+0.5
1,176,039	-		IAI47_05585	0.47	-0.1
1,176,041	+		IAI47_05585	0.47	+1.5
1,176,041	+		IAI47_05585	0.47	+2.0
1,176,042	-		IAI47_05585	0.47	+0.3
1,176,042	-		IAI47_05585	0.47	-1.1
1,176,056	+		IAI47_05585	0.48	+1.5
1,176,057	-		IAI47_05585	0.48	-2.1
1,176,160	+		IAI47_05585	0.59	-0.1
1,176,160	+		IAI47_05585	0.59	+0.1
1,176,161	-		IAI47_05585	0.59	+0.8
1,176,161	-		IAI47_05585	0.59	-2.3
1,176,161	-		IAI47_05585	0.59	-1.1
1,176,174	+		IAI47_05585	0.60	+1.5
1,176,174	+		IAI47_05585	0.60	-0.2
1,176,198	+		IAI47_05585	0.62	-2.2