Strain Fitness in Pantoea sp. MT58 around IAI47_04990

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,048,057	+		IAI47_04985	0.10	+1.6
1,048,057	+		IAI47_04985	0.10	-0.1
1,048,058	-		IAI47_04985	0.10	+2.0
1,048,058	-		IAI47_04985	0.10	-0.9
1,048,058	-		IAI47_04985	0.10	+1.3
1,048,068	+		IAI47_04985	0.11	+2.4
1,048,078	+		IAI47_04985	0.12	+1.0
1,048,078	+		IAI47_04985	0.12	+1.0
1,048,078	+		IAI47_04985	0.12	-0.7
1,048,078	+		IAI47_04985	0.12	-1.0
1,048,079	-		IAI47_04985	0.12	+0.5
1,048,162	+		IAI47_04985	0.21	+0.7
1,048,163	-		IAI47_04985	0.21	+0.8
1,048,163	-		IAI47_04985	0.21	-1.2
1,048,220	+		IAI47_04985	0.26	-0.9
1,048,220	+		IAI47_04985	0.26	+0.1
1,048,220	+		IAI47_04985	0.26	+0.6
1,048,220	+		IAI47_04985	0.26	+1.6
1,048,220	+		IAI47_04985	0.26	-1.2
1,048,220	+		IAI47_04985	0.26	+1.0
1,048,220	+		IAI47_04985	0.26	+1.6
1,048,220	+		IAI47_04985	0.26	-1.6
1,048,220	+		IAI47_04985	0.26	+2.3
1,048,220	+		IAI47_04985	0.26	+0.9
1,048,221	-		IAI47_04985	0.26	+0.3
1,048,221	-		IAI47_04985	0.26	-1.0
1,048,221	-		IAI47_04985	0.26	-0.4
1,048,221	-		IAI47_04985	0.26	-2.1
1,048,221	-		IAI47_04985	0.26	+0.6
1,048,221	-		IAI47_04985	0.26	-0.7
1,048,221	-		IAI47_04985	0.26	+1.6
1,048,266	+		IAI47_04985	0.31	+0.9
1,048,266	+		IAI47_04985	0.31	+0.0
1,048,267	-		IAI47_04985	0.31	-0.5
1,048,267	-		IAI47_04985	0.31	+0.0
1,048,301	+		IAI47_04985	0.34	+1.1
1,048,301	+		IAI47_04985	0.34	-0.2
1,048,302	-		IAI47_04985	0.34	+0.0
1,048,302	-		IAI47_04985	0.34	+0.9
1,048,309	+		IAI47_04985	0.35	-1.6
1,048,329	+		IAI47_04985	0.37	+0.8
1,048,329	+		IAI47_04985	0.37	-0.4
1,048,329	+		IAI47_04985	0.37	-2.1
1,048,329	+		IAI47_04985	0.37	+1.0
1,048,330	-		IAI47_04985	0.37	+1.1
1,048,330	-		IAI47_04985	0.37	-1.9
1,048,332	+		IAI47_04985	0.37	+2.2
1,048,348	+		IAI47_04985	0.39	-1.6
1,048,348	+		IAI47_04985	0.39	-1.3
1,048,348	+		IAI47_04985	0.39	-1.0
1,048,348	+		IAI47_04985	0.39	-0.4
1,048,348	+		IAI47_04985	0.39	-1.2
1,048,348	+		IAI47_04985	0.39	+0.8
1,048,349	-		IAI47_04985	0.39	-2.2
1,048,349	-		IAI47_04985	0.39	-0.7
1,048,384	+		IAI47_04985	0.43	+1.6
1,048,385	-		IAI47_04985	0.43	+0.1
1,048,441	+		IAI47_04985	0.48	-1.2
1,048,441	+		IAI47_04985	0.48	+0.1
1,048,442	-		IAI47_04985	0.48	-2.1
1,048,444	+		IAI47_04985	0.48	-0.7
1,048,445	-		IAI47_04985	0.49	-1.4
1,048,445	-		IAI47_04985	0.49	-2.0
1,048,447	+		IAI47_04985	0.49	-0.4
1,048,447	+		IAI47_04985	0.49	+0.6
1,048,448	-		IAI47_04985	0.49	+0.0
1,048,456	+		IAI47_04985	0.50	+0.3
1,048,457	-		IAI47_04985	0.50	+2.8
1,048,485	+		IAI47_04985	0.52	+3.7
1,048,485	+		IAI47_04985	0.52	+0.0
1,048,485	+		IAI47_04985	0.52	+2.5
1,048,486	-		IAI47_04985	0.53	-1.2
1,048,509	+		IAI47_04985	0.55	+3.1
1,048,509	+		IAI47_04985	0.55	+0.4
1,048,509	+		IAI47_04985	0.55	+0.6
1,048,510	-		IAI47_04985	0.55	+1.0
1,048,540	+		IAI47_04985	0.58	-1.6
1,048,570	+		IAI47_04985	0.61	-1.9
1,048,571	-		IAI47_04985	0.61	+1.6
1,048,571	-		IAI47_04985	0.61	-0.2
1,048,603	+		IAI47_04985	0.64	+2.6
1,048,604	-		IAI47_04985	0.64	+0.0
1,048,604	-		IAI47_04985	0.64	+0.7
1,048,615	+		IAI47_04985	0.65	+1.8
1,048,615	+		IAI47_04985	0.65	+1.2
1,048,623	+		IAI47_04985	0.66	+0.4
1,048,624	-		IAI47_04985	0.66	-1.6
1,048,651	+		IAI47_04985	0.69	+1.9
1,048,652	-		IAI47_04985	0.69	+0.3
1,048,652	-		IAI47_04985	0.69	+1.9
1,048,688	-		IAI47_04985	0.72	+2.0
1,048,709	-		IAI47_04985	0.75	-0.4
1,048,741	+		IAI47_04985	0.78	+1.4
1,048,757	+		IAI47_04985	0.79	+0.4
1,048,758	-		IAI47_04985	0.79	+3.6
1,048,778	+		IAI47_04985	0.81	-0.4
1,048,778	+		IAI47_04985	0.81	+1.9
1,048,850	-		IAI47_04985	0.88	+1.8
1,048,862	+		IAI47_04985	0.90	-0.6
1,048,862	+		IAI47_04985	0.90	+1.0
1,048,862	+		IAI47_04985	0.90	+0.4
1,048,862	+		IAI47_04985	0.90	-0.7
1,048,862	+		IAI47_04985	0.90	-0.7
1,048,862	+		IAI47_04985	0.90	+0.3
1,048,862	+		IAI47_04985	0.90	-1.4
1,048,863	-		IAI47_04985	0.90	+1.1
1,048,863	-		IAI47_04985	0.90	+0.5
1,048,863	-		IAI47_04985	0.90	+0.6
1,048,863	-		IAI47_04985	0.90	+0.7
1,048,863	-		IAI47_04985	0.90	-0.4
1,048,927	+				+1.4
1,048,928	-				-0.2
1,048,928	-				+1.0
1,048,964	+				+0.6
1,048,978	+				+0.4
1,049,015	+				+1.3
1,049,016	-				+0.2
1,049,016	-				+0.9
1,049,016	-				+1.7
1,049,023	-				-1.3
1,049,032	+				+1.0
1,049,032	+				-1.0
1,049,066	+				-0.6
1,049,067	-				-0.0
1,049,067	-				+0.4
1,049,067	-				-0.7
1,049,067	-				-1.7
1,049,067	-				-1.4
1,049,912	+				+1.4
1,049,913	-				+1.1
1,049,913	-				-2.1
1,049,917	+				+0.6
1,049,918	-				-0.3
1,049,920	+				-1.4
1,049,930	-				+0.2
1,049,930	-				+0.6
1,049,938	+				-2.6
1,049,956	+				+1.1
1,049,956	+				-0.9
1,049,963	-				+0.1
1,049,963	-				+0.0
1,049,979	-				+1.8
1,049,979	-				+0.8
1,049,984	+				+0.6
1,049,985	-				-0.7
1,050,015	-				+2.3
1,050,055	+		IAI47_04995	0.12	+0.2
1,050,055	+		IAI47_04995	0.12	-1.9
1,050,056	-		IAI47_04995	0.12	+0.3
1,050,056	-		IAI47_04995	0.12	-0.1
1,050,056	-		IAI47_04995	0.12	-0.7
1,050,056	-		IAI47_04995	0.12	-0.3
1,050,056	-		IAI47_04995	0.12	+1.8
1,050,056	-		IAI47_04995	0.12	-0.7
1,050,059	+		IAI47_04995	0.12	+0.7
1,050,059	+		IAI47_04995	0.12	-0.7
1,050,059	+		IAI47_04995	0.12	-2.1
1,050,059	+		IAI47_04995	0.12	+0.5
1,050,060	-		IAI47_04995	0.12	-0.7
1,050,060	-		IAI47_04995	0.12	-0.3
1,050,060	-		IAI47_04995	0.12	-1.1
1,050,066	+		IAI47_04995	0.13	-1.9
1,050,066	+		IAI47_04995	0.13	+0.8
1,050,066	+		IAI47_04995	0.13	-0.3
1,050,067	-		IAI47_04995	0.13	+1.3
1,050,067	-		IAI47_04995	0.13	+2.2
1,050,067	-		IAI47_04995	0.13	-2.0
1,050,067	-		IAI47_04995	0.13	+2.0
1,050,104	+		IAI47_04995	0.18	-0.2
1,050,104	+		IAI47_04995	0.18	-0.4
1,050,105	-		IAI47_04995	0.18	-1.2
1,050,105	-		IAI47_04995	0.18	-0.4
1,050,105	-		IAI47_04995	0.18	-1.9
1,050,146	+		IAI47_04995	0.24	-0.3
1,050,355	-		IAI47_04995	0.52	-2.2
1,050,384	+		IAI47_04995	0.55	+0.8
1,050,384	+		IAI47_04995	0.55	-2.0
1,050,384	+		IAI47_04995	0.55	+0.6
1,050,384	+		IAI47_04995	0.55	+0.0
1,050,419	+		IAI47_04995	0.60	-1.3
1,050,419	+		IAI47_04995	0.60	+0.4
1,050,420	-		IAI47_04995	0.60	-0.4
1,050,426	+		IAI47_04995	0.61	-1.1
1,050,426	+		IAI47_04995	0.61	-0.2
1,050,426	+		IAI47_04995	0.61	-1.7
1,050,427	-		IAI47_04995	0.61	-0.9
1,050,483	+		IAI47_04995	0.69	-1.0
1,050,484	-		IAI47_04995	0.69	+0.4
1,050,528	+		IAI47_04995	0.75	+0.8
1,050,528	+		IAI47_04995	0.75	+0.0
1,050,529	-		IAI47_04995	0.75	-0.4
1,050,529	-		IAI47_04995	0.75	-0.3
1,050,536	+		IAI47_04995	0.76	-1.4
1,050,536	+		IAI47_04995	0.76	+1.6
1,050,536	+		IAI47_04995	0.76	-0.5
1,050,537	-		IAI47_04995	0.76	+0.5
1,050,537	-		IAI47_04995	0.76	-1.2
1,050,537	-		IAI47_04995	0.76	+0.4
1,050,578	+		IAI47_04995	0.81	+1.9
1,050,579	-		IAI47_04995	0.81	+0.0
1,050,599	+		IAI47_04995	0.84	-0.9
1,050,599	+		IAI47_04995	0.84	+0.6
1,050,613	+		IAI47_04995	0.86	-1.2
1,050,613	+		IAI47_04995	0.86	+0.1
1,050,614	-		IAI47_04995	0.86	-1.7
1,050,614	-		IAI47_04995	0.86	+0.3
1,050,614	-		IAI47_04995	0.86	+1.3
1,050,615	+		IAI47_04995	0.86	-1.0
1,050,615	+		IAI47_04995	0.86	+1.4
1,050,616	-		IAI47_04995	0.86	-1.7
1,050,616	-		IAI47_04995	0.86	-1.0
1,050,616	-		IAI47_04995	0.86	-1.0
1,050,710	+				-1.4
1,050,711	-				-2.3
1,050,714	-				-0.7
1,050,738	+				+0.8
1,050,759	+				+0.3
1,050,763	+				-1.2
1,050,763	+				+1.6
1,050,811	+				-0.3
1,050,811	+				+1.4
1,050,811	+				+0.0
1,050,811	+				-0.4
1,050,834	-				+1.2
1,050,834	-				+1.6
1,050,834	-				-1.2