Strain Fitness in Pantoea sp. MT58 around IAI47_04865

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,019,453	+				-1.7
1,019,453	+				+0.8
1,019,453	+				+1.0
1,019,453	+				+0.2
1,019,453	+				+0.2
1,019,454	-				+0.7
1,019,470	+				-0.8
1,019,470	+				+0.0
1,019,471	-				-1.0
1,019,471	-				-0.4
1,019,487	+				+1.0
1,019,487	+				-0.7
1,019,487	+				+2.6
1,019,487	+				+1.6
1,019,487	+				+1.1
1,019,488	-				+0.2
1,019,496	-				-1.0
1,019,518	+				+0.9
1,019,518	+				-0.7
1,019,519	-				-0.3
1,019,519	-				+0.6
1,019,547	-				-1.4
1,019,563	+				+0.6
1,019,563	+				-0.3
1,019,613	+		IAI47_04860	0.15	+0.9
1,019,613	+		IAI47_04860	0.15	+1.0
1,019,613	+		IAI47_04860	0.15	+0.0
1,019,613	+		IAI47_04860	0.15	+1.6
1,019,614	-		IAI47_04860	0.15	+1.5
1,019,615	+		IAI47_04860	0.15	-1.2
1,019,615	+		IAI47_04860	0.15	-1.0
1,019,615	+		IAI47_04860	0.15	+2.6
1,019,615	+		IAI47_04860	0.15	-2.6
1,019,616	-		IAI47_04860	0.15	+0.0
1,019,616	-		IAI47_04860	0.15	-2.6
1,019,616	-		IAI47_04860	0.15	-1.8
1,019,695	+		IAI47_04860	0.23	+1.2
1,019,695	+		IAI47_04860	0.23	+0.7
1,019,696	-		IAI47_04860	0.23	+1.9
1,019,723	+		IAI47_04860	0.26	-1.2
1,019,748	+		IAI47_04860	0.29	-1.7
1,019,749	-		IAI47_04860	0.29	+1.6
1,019,749	-		IAI47_04860	0.29	-1.3
1,019,749	-		IAI47_04860	0.29	-0.2
1,019,749	-		IAI47_04860	0.29	-1.2
1,019,792	+		IAI47_04860	0.33	+1.3
1,019,792	+		IAI47_04860	0.33	-0.2
1,019,792	+		IAI47_04860	0.33	-1.4
1,019,792	+		IAI47_04860	0.33	+0.0
1,019,792	+		IAI47_04860	0.33	+0.6
1,019,793	-		IAI47_04860	0.34	-1.0
1,019,793	-		IAI47_04860	0.34	+0.2
1,019,793	-		IAI47_04860	0.34	-0.2
1,019,793	-		IAI47_04860	0.34	+0.8
1,019,793	-		IAI47_04860	0.34	-1.3
1,019,796	-		IAI47_04860	0.34	+0.0
1,019,850	+		IAI47_04860	0.39	-1.8
1,019,859	-		IAI47_04860	0.40	+1.0
1,019,861	+		IAI47_04860	0.41	+0.6
1,019,866	+		IAI47_04860	0.41	-2.9
1,019,866	+		IAI47_04860	0.41	-1.4
1,019,866	+		IAI47_04860	0.41	-2.6
1,019,866	+		IAI47_04860	0.41	-1.0
1,019,909	+		IAI47_04860	0.46	+0.0
1,019,940	+		IAI47_04860	0.49	-0.7
1,019,940	+		IAI47_04860	0.49	-1.6
1,019,940	+		IAI47_04860	0.49	+0.6
1,019,940	+		IAI47_04860	0.49	+0.9
1,019,940	+		IAI47_04860	0.49	+1.6
1,019,940	+		IAI47_04860	0.49	-0.4
1,019,940	+		IAI47_04860	0.49	+1.0
1,019,940	+		IAI47_04860	0.49	-0.6
1,019,940	+		IAI47_04860	0.49	-0.7
1,019,940	+		IAI47_04860	0.49	+1.0
1,019,940	+		IAI47_04860	0.49	-0.7
1,019,941	-		IAI47_04860	0.49	+1.0
1,019,941	-		IAI47_04860	0.49	-0.5
1,019,941	-		IAI47_04860	0.49	-0.1
1,019,941	-		IAI47_04860	0.49	+2.2
1,019,941	-		IAI47_04860	0.49	+0.6
1,019,941	-		IAI47_04860	0.49	-1.7
1,019,941	-		IAI47_04860	0.49	+2.0
1,019,941	-		IAI47_04860	0.49	+0.7
1,019,941	-		IAI47_04860	0.49	+1.6
1,019,941	-		IAI47_04860	0.49	-1.8
1,019,941	-		IAI47_04860	0.49	+0.8
1,019,941	-		IAI47_04860	0.49	-1.3
1,019,941	-		IAI47_04860	0.49	+0.0
1,019,941	-		IAI47_04860	0.49	+1.3
1,019,941	-		IAI47_04860	0.49	+0.1
1,020,059	+		IAI47_04860	0.61	-0.4
1,020,059	+		IAI47_04860	0.61	+0.6
1,020,059	+		IAI47_04860	0.61	+1.3
1,020,059	+		IAI47_04860	0.61	-0.7
1,020,059	+		IAI47_04860	0.61	+0.2
1,020,059	+		IAI47_04860	0.61	+1.4
1,020,060	-		IAI47_04860	0.61	+0.4
1,020,060	-		IAI47_04860	0.61	+1.6
1,020,104	-		IAI47_04860	0.66	-0.2
1,020,134	+		IAI47_04860	0.69	-0.9
1,020,134	+		IAI47_04860	0.69	-0.7
1,020,135	-		IAI47_04860	0.69	+1.1
1,020,135	-		IAI47_04860	0.69	+0.8
1,020,135	-		IAI47_04860	0.69	+0.3
1,020,135	-		IAI47_04860	0.69	-1.0
1,020,135	-		IAI47_04860	0.69	+0.9
1,020,154	+		IAI47_04860	0.71	+1.4
1,020,191	+		IAI47_04860	0.75	+2.6
1,020,191	+		IAI47_04860	0.75	-1.4
1,020,192	-		IAI47_04860	0.75	+0.0
1,020,215	+		IAI47_04860	0.78	-0.6
1,020,215	+		IAI47_04860	0.78	-0.5
1,020,231	+		IAI47_04860	0.79	+0.4
1,020,231	+		IAI47_04860	0.79	+0.3
1,020,232	-		IAI47_04860	0.79	+1.0
1,020,232	-		IAI47_04860	0.79	+1.3
1,020,248	+		IAI47_04860	0.81	-0.7
1,020,248	+		IAI47_04860	0.81	+1.8
1,020,249	-		IAI47_04860	0.81	-0.6
1,020,279	-		IAI47_04860	0.84	+0.5
1,020,317	+		IAI47_04860	0.88	-0.5
1,020,317	+		IAI47_04860	0.88	-0.2
1,020,318	-		IAI47_04860	0.88	-1.2
1,020,341	+				+0.4
1,020,341	+				+1.6
1,020,341	+				+2.0
1,020,342	-				+1.1
1,020,342	-				+1.1
1,020,393	-				+0.2
1,020,404	+				-0.1
1,020,404	+				+1.5
1,020,404	+				-0.4
1,020,405	-				+1.6
1,020,405	-				+0.0
1,020,405	-				-1.7
1,020,405	-				-1.6
1,020,787	+		IAI47_04865	0.78	+1.0
1,020,787	+		IAI47_04865	0.78	+1.6
1,020,788	-		IAI47_04865	0.78	+2.1
1,020,788	-		IAI47_04865	0.78	-1.0
1,020,788	-		IAI47_04865	0.78	-1.8
1,020,888	-				+0.0
1,020,892	+				+0.4
1,020,892	+				-3.0
1,020,892	+				+0.2
1,020,892	+				-2.1
1,020,892	+				-0.6
1,020,892	+				+1.1
1,020,892	+				-0.4
1,020,893	-				-0.6
1,020,893	-				+0.4
1,020,943	+				-0.3
1,020,943	+				-1.0
1,020,943	+				+0.6
1,020,944	-				-1.0
1,020,944	-				+0.0
1,020,944	-				+1.1
1,020,944	-				+1.3
1,020,944	-				+0.4
1,020,944	-				-1.4
1,020,977	-				-0.2
1,020,977	-				-1.8
1,020,996	+				+0.3
1,020,996	+				-0.4
1,020,996	+				+0.2
1,020,996	+				-2.1
1,020,996	+				-1.4
1,020,996	+				-0.7
1,020,996	+				-0.2
1,020,996	+				+0.9
1,020,996	+				-0.9
1,020,996	+				+0.7
1,020,996	+				-0.8
1,020,999	+				+0.9
1,020,999	+				-1.8
1,020,999	+				+0.6
1,020,999	+				+1.7
1,020,999	+				-1.7
1,021,012	+				-0.6
1,021,143	+				-0.4
1,021,161	+				+0.6
1,021,161	+				-0.7
1,021,236	+				-0.4
1,021,236	+				-0.4
1,021,318	+		IAI47_04870	0.12	-1.0
1,021,352	+		IAI47_04870	0.14	-2.1
1,021,363	+		IAI47_04870	0.14	+0.6
1,021,456	+		IAI47_04870	0.19	-1.2
1,021,456	+		IAI47_04870	0.19	+0.6
1,021,458	+		IAI47_04870	0.19	+0.0
1,021,710	+		IAI47_04870	0.33	-1.7
1,021,714	+		IAI47_04870	0.34	-1.6
1,021,714	+		IAI47_04870	0.34	-0.7
1,021,776	+		IAI47_04870	0.37	+0.4
1,021,776	+		IAI47_04870	0.37	-0.7
1,021,776	+		IAI47_04870	0.37	-1.4
1,021,801	+		IAI47_04870	0.39	+0.0
1,021,803	+		IAI47_04870	0.39	+2.6
1,021,803	+		IAI47_04870	0.39	+1.8
1,021,833	+		IAI47_04870	0.40	-1.0
1,021,833	+		IAI47_04870	0.40	+0.3
1,021,848	+		IAI47_04870	0.41	-1.4