Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03965 and IAI47_03970 overlap by 4 nucleotides IAI47_03970 and IAI47_03975 are separated by 49 nucleotides
IAI47_03965: IAI47_03965 - exodeoxyribonuclease V subunit beta, at 828,659 to 832,198
_03965
IAI47_03970: IAI47_03970 - exodeoxyribonuclease V subunit alpha, at 832,195 to 834,036
_03970
IAI47_03975: IAI47_03975 - amino-acid N-acetyltransferase, at 834,086 to 835,414
_03975
Position (kb) 832
833
834
835 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 832.194 kb on + strand at 832.194 kb on + strand at 832.194 kb on + strand at 832.194 kb on + strand at 832.194 kb on + strand at 832.194 kb on + strand at 832.195 kb on - strand at 832.195 kb on - strand at 832.229 kb on + strand at 832.514 kb on + strand, within IAI47_03970 at 832.514 kb on + strand, within IAI47_03970 at 832.514 kb on + strand, within IAI47_03970 at 832.515 kb on - strand, within IAI47_03970 at 832.515 kb on - strand, within IAI47_03970 at 832.515 kb on - strand, within IAI47_03970 at 832.529 kb on + strand, within IAI47_03970 at 832.529 kb on + strand, within IAI47_03970 at 832.529 kb on + strand, within IAI47_03970 at 832.530 kb on - strand, within IAI47_03970 at 832.530 kb on - strand, within IAI47_03970 at 832.531 kb on + strand, within IAI47_03970 at 832.531 kb on + strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.532 kb on - strand, within IAI47_03970 at 832.609 kb on - strand, within IAI47_03970 at 832.633 kb on - strand, within IAI47_03970 at 832.917 kb on + strand, within IAI47_03970 at 832.918 kb on - strand, within IAI47_03970 at 832.962 kb on - strand, within IAI47_03970 at 832.967 kb on - strand, within IAI47_03970 at 832.967 kb on - strand, within IAI47_03970 at 833.140 kb on - strand, within IAI47_03970 at 833.140 kb on - strand, within IAI47_03970 at 833.165 kb on - strand, within IAI47_03970 at 833.165 kb on - strand, within IAI47_03970 at 833.213 kb on + strand, within IAI47_03970 at 833.214 kb on - strand, within IAI47_03970 at 833.279 kb on - strand, within IAI47_03970 at 833.325 kb on + strand, within IAI47_03970 at 833.386 kb on + strand, within IAI47_03970 at 833.386 kb on + strand, within IAI47_03970 at 833.387 kb on - strand, within IAI47_03970 at 833.413 kb on + strand, within IAI47_03970 at 833.413 kb on + strand, within IAI47_03970 at 833.414 kb on - strand, within IAI47_03970 at 833.446 kb on + strand, within IAI47_03970 at 833.446 kb on + strand, within IAI47_03970 at 833.446 kb on + strand, within IAI47_03970 at 833.499 kb on - strand, within IAI47_03970 at 833.534 kb on + strand, within IAI47_03970 at 833.534 kb on + strand, within IAI47_03970 at 833.534 kb on + strand, within IAI47_03970 at 833.574 kb on + strand, within IAI47_03970 at 833.575 kb on - strand, within IAI47_03970 at 833.635 kb on + strand, within IAI47_03970 at 833.635 kb on + strand, within IAI47_03970 at 833.635 kb on + strand, within IAI47_03970 at 833.635 kb on + strand, within IAI47_03970 at 833.908 kb on + strand at 833.908 kb on + strand at 833.909 kb on - strand at 833.909 kb on - strand at 833.909 kb on - strand at 833.943 kb on + strand at 833.943 kb on + strand at 833.943 kb on + strand at 833.943 kb on + strand at 833.944 kb on - strand at 833.944 kb on - strand at 833.944 kb on - strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.948 kb on - strand at 833.948 kb on - strand at 834.011 kb on + strand at 834.126 kb on + strand at 834.127 kb on - strand at 834.127 kb on - strand at 834.127 kb on - strand at 834.127 kb on - strand at 834.127 kb on - strand at 834.130 kb on + strand at 834.130 kb on + strand at 834.130 kb on + strand at 834.130 kb on + strand at 834.130 kb on + strand at 834.130 kb on + strand at 834.130 kb on + strand at 834.130 kb on + strand at 834.130 kb on + strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.131 kb on - strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.132 kb on + strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.133 kb on - strand at 834.166 kb on + strand at 834.167 kb on - strand at 834.167 kb on - strand at 834.167 kb on - strand at 834.205 kb on + strand at 834.205 kb on + strand at 834.353 kb on - strand, within IAI47_03975 at 834.353 kb on - strand, within IAI47_03975 at 834.360 kb on + strand, within IAI47_03975 at 834.360 kb on + strand, within IAI47_03975 at 834.361 kb on - strand, within IAI47_03975 at 834.400 kb on + strand, within IAI47_03975 at 834.401 kb on - strand, within IAI47_03975 at 834.412 kb on + strand, within IAI47_03975 at 834.413 kb on - strand, within IAI47_03975 at 834.413 kb on - strand, within IAI47_03975 at 834.413 kb on - strand, within IAI47_03975 at 834.413 kb on - strand, within IAI47_03975 at 834.449 kb on + strand, within IAI47_03975 at 834.449 kb on + strand, within IAI47_03975 at 834.449 kb on + strand, within IAI47_03975 at 834.449 kb on + strand, within IAI47_03975 at 834.449 kb on + strand, within IAI47_03975 at 834.450 kb on - strand, within IAI47_03975 at 834.511 kb on + strand, within IAI47_03975 at 834.511 kb on + strand, within IAI47_03975 at 834.512 kb on - strand, within IAI47_03975 at 834.562 kb on + strand, within IAI47_03975 at 834.563 kb on - strand, within IAI47_03975 at 834.609 kb on + strand, within IAI47_03975 at 834.610 kb on - strand, within IAI47_03975 at 834.610 kb on - strand, within IAI47_03975 at 834.617 kb on + strand, within IAI47_03975 at 834.617 kb on + strand, within IAI47_03975 at 834.618 kb on - strand, within IAI47_03975 at 834.618 kb on - strand, within IAI47_03975 at 834.690 kb on + strand, within IAI47_03975 at 834.691 kb on - strand, within IAI47_03975 at 834.706 kb on - strand, within IAI47_03975 at 834.755 kb on - strand, within IAI47_03975 at 834.755 kb on - strand, within IAI47_03975 at 834.769 kb on + strand, within IAI47_03975 at 834.770 kb on - strand, within IAI47_03975 at 834.770 kb on - strand, within IAI47_03975 at 834.823 kb on + strand, within IAI47_03975 at 834.952 kb on + strand, within IAI47_03975 at 834.952 kb on + strand, within IAI47_03975 at 834.961 kb on + strand, within IAI47_03975 at 834.978 kb on + strand, within IAI47_03975 at 834.978 kb on + strand, within IAI47_03975 at 834.978 kb on + strand, within IAI47_03975 at 834.979 kb on - strand, within IAI47_03975 at 835.015 kb on + strand, within IAI47_03975 at 835.015 kb on + strand, within IAI47_03975
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 832,194 + -1.4 832,194 + +0.3 832,194 + -1.0 832,194 + -1.0 832,194 + +1.0 832,194 + +0.0 832,195 - -0.1 832,195 - -1.0 832,229 + +0.7 832,514 + IAI47_03970 0.17 +0.1 832,514 + IAI47_03970 0.17 -0.4 832,514 + IAI47_03970 0.17 -0.4 832,515 - IAI47_03970 0.17 -1.4 832,515 - IAI47_03970 0.17 -1.9 832,515 - IAI47_03970 0.17 +0.3 832,529 + IAI47_03970 0.18 -0.9 832,529 + IAI47_03970 0.18 -0.4 832,529 + IAI47_03970 0.18 +0.0 832,530 - IAI47_03970 0.18 -3.0 832,530 - IAI47_03970 0.18 -0.7 832,531 + IAI47_03970 0.18 -2.7 832,531 + IAI47_03970 0.18 -2.9 832,532 - IAI47_03970 0.18 +0.4 832,532 - IAI47_03970 0.18 -0.6 832,532 - IAI47_03970 0.18 +0.0 832,532 - IAI47_03970 0.18 -1.3 832,532 - IAI47_03970 0.18 +1.1 832,532 - IAI47_03970 0.18 +1.0 832,532 - IAI47_03970 0.18 +1.0 832,532 - IAI47_03970 0.18 +1.6 832,532 - IAI47_03970 0.18 +0.0 832,532 - IAI47_03970 0.18 -2.2 832,609 - IAI47_03970 0.22 -2.3 832,633 - IAI47_03970 0.24 -1.4 832,917 + IAI47_03970 0.39 -2.3 832,918 - IAI47_03970 0.39 +0.0 832,962 - IAI47_03970 0.42 +0.6 832,967 - IAI47_03970 0.42 -1.4 832,967 - IAI47_03970 0.42 -0.2 833,140 - IAI47_03970 0.51 -1.7 833,140 - IAI47_03970 0.51 -1.2 833,165 - IAI47_03970 0.53 +1.6 833,165 - IAI47_03970 0.53 +0.7 833,213 + IAI47_03970 0.55 +0.6 833,214 - IAI47_03970 0.55 -1.0 833,279 - IAI47_03970 0.59 +0.0 833,325 + IAI47_03970 0.61 +0.9 833,386 + IAI47_03970 0.65 +0.6 833,386 + IAI47_03970 0.65 -1.0 833,387 - IAI47_03970 0.65 -0.7 833,413 + IAI47_03970 0.66 +1.6 833,413 + IAI47_03970 0.66 +1.4 833,414 - IAI47_03970 0.66 -2.1 833,446 + IAI47_03970 0.68 -0.7 833,446 + IAI47_03970 0.68 -1.2 833,446 + IAI47_03970 0.68 +1.3 833,499 - IAI47_03970 0.71 +1.6 833,534 + IAI47_03970 0.73 +0.0 833,534 + IAI47_03970 0.73 -0.2 833,534 + IAI47_03970 0.73 +0.7 833,574 + IAI47_03970 0.75 -1.2 833,575 - IAI47_03970 0.75 -1.7 833,635 + IAI47_03970 0.78 -0.3 833,635 + IAI47_03970 0.78 -2.2 833,635 + IAI47_03970 0.78 -1.4 833,635 + IAI47_03970 0.78 -1.9 833,908 + +0.6 833,908 + +0.6 833,909 - -1.5 833,909 - -0.5 833,909 - +0.7 833,943 + +0.6 833,943 + -1.2 833,943 + +0.6 833,943 + +2.2 833,944 - +1.0 833,944 - -2.3 833,944 - +0.7 833,947 + +0.0 833,947 + +0.8 833,947 + -0.5 833,947 + +0.0 833,947 + +1.6 833,947 + +2.0 833,948 - +0.7 833,948 - -0.2 834,011 + +0.5 834,126 + -2.4 834,127 - -1.6 834,127 - +0.6 834,127 - -1.2 834,127 - -1.2 834,127 - -1.6 834,130 + -1.0 834,130 + -3.4 834,130 + -2.7 834,130 + -2.8 834,130 + -2.2 834,130 + -2.0 834,130 + -1.6 834,130 + -1.0 834,130 + -1.9 834,131 - -0.4 834,131 - -1.6 834,131 - -4.0 834,131 - -3.0 834,131 - -2.1 834,131 - +1.6 834,131 - -5.3 834,131 - -1.4 834,131 - -0.4 834,131 - -1.9 834,131 - -0.4 834,131 - -2.2 834,131 - -2.4 834,131 - +1.6 834,131 - -1.7 834,131 - -1.2 834,131 - -1.0 834,131 - +0.0 834,131 - +0.0 834,132 + -1.6 834,132 + +1.6 834,132 + +0.0 834,132 + -1.9 834,132 + -1.7 834,132 + -1.7 834,132 + -0.7 834,132 + -1.9 834,132 + -2.0 834,132 + -2.0 834,132 + -0.7 834,132 + -3.0 834,132 + -1.7 834,132 + -1.9 834,132 + -1.0 834,132 + -2.3 834,132 + -3.2 834,132 + -2.3 834,132 + -1.2 834,132 + -3.1 834,132 + -1.4 834,132 + -2.3 834,132 + -1.2 834,132 + -2.4 834,132 + -2.2 834,132 + -2.6 834,132 + -1.6 834,132 + -2.8 834,132 + -1.0 834,132 + -1.4 834,132 + -2.6 834,132 + +0.0 834,132 + -1.6 834,132 + -2.4 834,132 + -4.1 834,132 + -3.4 834,132 + -2.8 834,132 + -1.7 834,132 + -1.0 834,133 - -1.9 834,133 - -2.7 834,133 - -1.0 834,133 - -3.7 834,133 - -2.2 834,133 - -0.7 834,133 - -1.7 834,133 - -1.4 834,133 - -1.3 834,133 - -0.4 834,133 - -2.0 834,133 - -3.4 834,133 - -2.9 834,133 - +0.0 834,133 - -1.6 834,133 - -3.0 834,133 - -1.4 834,133 - -2.2 834,133 - -1.7 834,133 - -3.5 834,133 - -1.2 834,133 - -2.4 834,133 - -2.4 834,133 - -2.9 834,133 - -1.9 834,133 - -0.7 834,133 - -1.2 834,133 - -1.0 834,133 - -2.9 834,133 - -2.1 834,133 - -2.8 834,133 - +0.0 834,133 - -3.9 834,133 - -0.4 834,133 - -2.1 834,133 - -2.9 834,133 - -2.0 834,133 - -1.6 834,133 - -1.9 834,133 - -1.0 834,133 - -1.9 834,133 - -1.9 834,133 - -2.9 834,133 - -1.6 834,133 - -3.4 834,133 - -1.7 834,133 - +0.6 834,133 - +0.0 834,133 - -0.7 834,133 - -1.7 834,133 - +0.6 834,133 - -3.5 834,133 - -3.6 834,133 - -1.7 834,133 - +1.6 834,133 - +0.0 834,133 - -2.9 834,166 + -1.0 834,167 - -2.6 834,167 - -2.4 834,167 - -2.4 834,205 + -2.3 834,205 + -0.4 834,353 - IAI47_03975 0.20 -1.0 834,353 - IAI47_03975 0.20 +0.6 834,360 + IAI47_03975 0.21 -0.7 834,360 + IAI47_03975 0.21 -2.8 834,361 - IAI47_03975 0.21 -1.2 834,400 + IAI47_03975 0.24 -3.4 834,401 - IAI47_03975 0.24 -1.6 834,412 + IAI47_03975 0.25 -1.5 834,413 - IAI47_03975 0.25 -1.2 834,413 - IAI47_03975 0.25 -2.5 834,413 - IAI47_03975 0.25 -0.7 834,413 - IAI47_03975 0.25 -2.9 834,449 + IAI47_03975 0.27 -1.6 834,449 + IAI47_03975 0.27 -2.1 834,449 + IAI47_03975 0.27 +0.0 834,449 + IAI47_03975 0.27 -0.7 834,449 + IAI47_03975 0.27 +0.0 834,450 - IAI47_03975 0.27 -2.6 834,511 + IAI47_03975 0.32 -1.0 834,511 + IAI47_03975 0.32 +0.6 834,512 - IAI47_03975 0.32 -0.7 834,562 + IAI47_03975 0.36 -3.7 834,563 - IAI47_03975 0.36 -2.2 834,609 + IAI47_03975 0.39 -1.0 834,610 - IAI47_03975 0.39 -1.7 834,610 - IAI47_03975 0.39 -0.7 834,617 + IAI47_03975 0.40 -1.9 834,617 + IAI47_03975 0.40 -1.0 834,618 - IAI47_03975 0.40 -3.7 834,618 - IAI47_03975 0.40 -2.0 834,690 + IAI47_03975 0.45 -3.1 834,691 - IAI47_03975 0.46 -1.9 834,706 - IAI47_03975 0.47 -2.1 834,755 - IAI47_03975 0.50 -3.3 834,755 - IAI47_03975 0.50 -1.2 834,769 + IAI47_03975 0.51 -1.4 834,770 - IAI47_03975 0.51 -1.2 834,770 - IAI47_03975 0.51 -0.4 834,823 + IAI47_03975 0.55 -2.1 834,952 + IAI47_03975 0.65 -2.6 834,952 + IAI47_03975 0.65 -1.0 834,961 + IAI47_03975 0.66 -2.9 834,978 + IAI47_03975 0.67 -1.2 834,978 + IAI47_03975 0.67 -2.7 834,978 + IAI47_03975 0.67 -1.7 834,979 - IAI47_03975 0.67 -3.7 835,015 + IAI47_03975 0.70 -1.9 835,015 + IAI47_03975 0.70 -2.1
Or see this region's nucleotide sequence