Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01930 and IAI47_01935 are separated by 261 nucleotides IAI47_01935 and IAI47_01940 are separated by 99 nucleotides IAI47_01940 and IAI47_01945 overlap by 11 nucleotides IAI47_01945 and IAI47_01950 are separated by 41 nucleotides
IAI47_01930: IAI47_01930 - MFS transporter TsgA, at 422,573 to 423,751
_01930
IAI47_01935: IAI47_01935 - peptidylprolyl isomerase A, at 424,013 to 424,585
_01935
IAI47_01940: IAI47_01940 - DUF2559 family protein, at 424,685 to 424,855
_01940
IAI47_01945: IAI47_01945 - putative adenosine monophosphate-protein transferase Fic, at 424,845 to 425,438
_01945
IAI47_01950: IAI47_01950 - aminodeoxychorismate/anthranilate synthase component II, at 425,480 to 426,055
_01950
Position (kb) 424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 423.702 kb on + strand at 423.702 kb on + strand at 423.702 kb on + strand at 423.702 kb on + strand at 423.702 kb on + strand at 423.702 kb on + strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.716 kb on + strand at 423.717 kb on - strand at 423.733 kb on + strand at 423.733 kb on + strand at 423.733 kb on + strand at 423.733 kb on + strand at 423.733 kb on + strand at 423.734 kb on - strand at 423.734 kb on - strand at 423.734 kb on - strand at 423.739 kb on + strand at 423.740 kb on - strand at 423.798 kb on + strand at 423.819 kb on + strand at 423.837 kb on - strand at 423.846 kb on + strand at 423.847 kb on - strand at 423.855 kb on + strand at 423.855 kb on + strand at 423.855 kb on + strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.869 kb on - strand at 423.923 kb on + strand at 423.923 kb on + strand at 423.923 kb on + strand at 423.923 kb on + strand at 423.924 kb on - strand at 423.924 kb on - strand at 423.928 kb on - strand at 423.929 kb on + strand at 423.929 kb on + strand at 423.929 kb on + strand at 423.933 kb on + strand at 423.933 kb on + strand at 423.953 kb on + strand at 423.953 kb on + strand at 423.964 kb on + strand at 423.964 kb on + strand at 424.018 kb on + strand at 424.018 kb on + strand at 424.019 kb on - strand at 424.019 kb on - strand at 424.019 kb on - strand at 424.024 kb on + strand at 424.025 kb on - strand at 424.029 kb on + strand at 424.029 kb on + strand at 424.029 kb on + strand at 424.030 kb on - strand at 424.129 kb on + strand, within IAI47_01935 at 424.129 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.205 kb on + strand, within IAI47_01935 at 424.205 kb on + strand, within IAI47_01935 at 424.205 kb on + strand, within IAI47_01935 at 424.205 kb on + strand, within IAI47_01935 at 424.206 kb on - strand, within IAI47_01935 at 424.243 kb on + strand, within IAI47_01935 at 424.243 kb on + strand, within IAI47_01935 at 424.244 kb on - strand, within IAI47_01935 at 424.304 kb on - strand, within IAI47_01935 at 424.351 kb on + strand, within IAI47_01935 at 424.351 kb on + strand, within IAI47_01935 at 424.351 kb on + strand, within IAI47_01935 at 424.352 kb on - strand, within IAI47_01935 at 424.352 kb on - strand, within IAI47_01935 at 424.352 kb on - strand, within IAI47_01935 at 424.361 kb on - strand, within IAI47_01935 at 424.411 kb on + strand, within IAI47_01935 at 424.449 kb on - strand, within IAI47_01935 at 424.449 kb on - strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.456 kb on - strand, within IAI47_01935 at 424.456 kb on - strand, within IAI47_01935 at 424.530 kb on - strand at 424.530 kb on - strand at 424.530 kb on - strand at 424.554 kb on + strand at 424.554 kb on + strand at 424.554 kb on + strand at 424.555 kb on - strand at 424.555 kb on - strand at 424.555 kb on - strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.559 kb on - strand at 424.559 kb on - strand at 424.559 kb on - strand at 424.559 kb on - strand at 424.559 kb on - strand at 424.651 kb on + strand at 424.651 kb on + strand at 424.651 kb on + strand at 424.651 kb on + strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.657 kb on + strand at 424.657 kb on + strand at 424.658 kb on - strand at 424.658 kb on - strand at 424.739 kb on - strand, within IAI47_01940 at 424.748 kb on + strand, within IAI47_01940 at 424.748 kb on + strand, within IAI47_01940 at 424.748 kb on + strand, within IAI47_01940 at 424.749 kb on - strand, within IAI47_01940 at 424.749 kb on - strand, within IAI47_01940 at 424.798 kb on + strand, within IAI47_01940 at 424.844 kb on + strand at 424.844 kb on + strand at 424.845 kb on - strand at 424.845 kb on - strand at 424.853 kb on + strand at 424.853 kb on + strand at 424.853 kb on + strand at 424.853 kb on + strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.856 kb on + strand at 424.878 kb on + strand at 424.878 kb on + strand at 424.879 kb on - strand at 424.879 kb on - strand at 424.962 kb on - strand, within IAI47_01945 at 424.962 kb on - strand, within IAI47_01945 at 425.000 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.056 kb on - strand, within IAI47_01945 at 425.056 kb on - strand, within IAI47_01945 at 425.056 kb on - strand, within IAI47_01945 at 425.087 kb on + strand, within IAI47_01945 at 425.087 kb on + strand, within IAI47_01945 at 425.087 kb on + strand, within IAI47_01945 at 425.087 kb on + strand, within IAI47_01945 at 425.088 kb on - strand, within IAI47_01945 at 425.124 kb on + strand, within IAI47_01945 at 425.124 kb on + strand, within IAI47_01945 at 425.124 kb on + strand, within IAI47_01945 at 425.124 kb on + strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.126 kb on + strand, within IAI47_01945 at 425.127 kb on - strand, within IAI47_01945 at 425.127 kb on - strand, within IAI47_01945 at 425.127 kb on - strand, within IAI47_01945 at 425.180 kb on - strand, within IAI47_01945 at 425.204 kb on + strand, within IAI47_01945 at 425.204 kb on + strand, within IAI47_01945 at 425.205 kb on - strand, within IAI47_01945 at 425.223 kb on + strand, within IAI47_01945 at 425.223 kb on + strand, within IAI47_01945 at 425.223 kb on + strand, within IAI47_01945 at 425.224 kb on - strand, within IAI47_01945 at 425.224 kb on - strand, within IAI47_01945 at 425.224 kb on - strand, within IAI47_01945 at 425.226 kb on + strand, within IAI47_01945 at 425.226 kb on + strand, within IAI47_01945 at 425.227 kb on - strand, within IAI47_01945 at 425.227 kb on - strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.241 kb on - strand, within IAI47_01945 at 425.444 kb on + strand at 425.445 kb on - strand at 425.501 kb on + strand at 425.501 kb on + strand at 425.501 kb on + strand at 425.501 kb on + strand at 425.501 kb on + strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.512 kb on + strand at 425.512 kb on + strand at 425.512 kb on + strand at 425.512 kb on + strand at 425.513 kb on - strand at 425.525 kb on + strand at 425.526 kb on - strand at 425.526 kb on - strand at 425.531 kb on + strand at 425.531 kb on + strand at 425.531 kb on + strand at 425.532 kb on - strand at 425.532 kb on - strand at 425.744 kb on + strand, within IAI47_01950 at 425.744 kb on + strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.760 kb on + strand, within IAI47_01950 at 425.760 kb on + strand, within IAI47_01950 at 425.760 kb on + strand, within IAI47_01950 at 425.760 kb on + strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.836 kb on + strand, within IAI47_01950 at 425.846 kb on - strand, within IAI47_01950
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 423,702 + +0.3 423,702 + -2.0 423,702 + -0.1 423,702 + +0.5 423,702 + +1.7 423,702 + -1.0 423,703 - +0.7 423,703 - -3.0 423,703 - -1.9 423,703 - -1.1 423,703 - -1.8 423,703 - -0.4 423,716 + -0.4 423,717 - -0.7 423,733 + +0.3 423,733 + +0.4 423,733 + +0.2 423,733 + -0.0 423,733 + +1.3 423,734 - -1.8 423,734 - -0.8 423,734 - -0.0 423,739 + +0.7 423,740 - +1.3 423,798 + +2.1 423,819 + -0.0 423,837 - -2.0 423,846 + +2.3 423,847 - +0.9 423,855 + -0.4 423,855 + +1.5 423,855 + +0.5 423,856 - +0.8 423,856 - +0.8 423,856 - -2.4 423,856 - -0.8 423,856 - +0.2 423,856 - +2.9 423,869 - +0.2 423,923 + -0.0 423,923 + -0.8 423,923 + +2.6 423,923 + +1.3 423,924 - -1.6 423,924 - +0.6 423,928 - -0.8 423,929 + -0.2 423,929 + +0.6 423,929 + -3.0 423,933 + -1.6 423,933 + -2.3 423,953 + +2.1 423,953 + +2.0 423,964 + +3.1 423,964 + +0.9 424,018 + +1.9 424,018 + -0.0 424,019 - +1.3 424,019 - +1.0 424,019 - +1.1 424,024 + +0.1 424,025 - +2.8 424,029 + +0.1 424,029 + -1.4 424,029 + -0.0 424,030 - -1.8 424,129 + IAI47_01935 0.20 +0.3 424,129 + IAI47_01935 0.20 +1.6 424,187 + IAI47_01935 0.30 -0.0 424,187 + IAI47_01935 0.30 -0.8 424,187 + IAI47_01935 0.30 +1.6 424,187 + IAI47_01935 0.30 -2.3 424,187 + IAI47_01935 0.30 -1.0 424,187 + IAI47_01935 0.30 -2.4 424,187 + IAI47_01935 0.30 -0.8 424,188 - IAI47_01935 0.31 +0.6 424,188 - IAI47_01935 0.31 +0.4 424,188 - IAI47_01935 0.31 -0.1 424,188 - IAI47_01935 0.31 +1.0 424,188 - IAI47_01935 0.31 -0.9 424,188 - IAI47_01935 0.31 +0.1 424,188 - IAI47_01935 0.31 -1.9 424,188 - IAI47_01935 0.31 -0.0 424,188 - IAI47_01935 0.31 +0.9 424,205 + IAI47_01935 0.34 +0.0 424,205 + IAI47_01935 0.34 -1.0 424,205 + IAI47_01935 0.34 +0.3 424,205 + IAI47_01935 0.34 -0.4 424,206 - IAI47_01935 0.34 +1.9 424,243 + IAI47_01935 0.40 +0.4 424,243 + IAI47_01935 0.40 +1.6 424,244 - IAI47_01935 0.40 -0.9 424,304 - IAI47_01935 0.51 -0.3 424,351 + IAI47_01935 0.59 -1.3 424,351 + IAI47_01935 0.59 -1.0 424,351 + IAI47_01935 0.59 -2.6 424,352 - IAI47_01935 0.59 +1.1 424,352 - IAI47_01935 0.59 +2.2 424,352 - IAI47_01935 0.59 +0.4 424,361 - IAI47_01935 0.61 +1.6 424,411 + IAI47_01935 0.69 -1.0 424,449 - IAI47_01935 0.76 -2.1 424,449 - IAI47_01935 0.76 -0.1 424,455 + IAI47_01935 0.77 +0.1 424,455 + IAI47_01935 0.77 +1.1 424,455 + IAI47_01935 0.77 -0.6 424,455 + IAI47_01935 0.77 +2.1 424,455 + IAI47_01935 0.77 -1.4 424,456 - IAI47_01935 0.77 -0.4 424,456 - IAI47_01935 0.77 +1.8 424,530 - -1.0 424,530 - +0.5 424,530 - -0.3 424,554 + +0.3 424,554 + -1.0 424,554 + +0.3 424,555 - -2.3 424,555 - -0.0 424,555 - +1.5 424,558 + +0.6 424,558 + -0.9 424,558 + +0.8 424,558 + -1.6 424,558 + +0.3 424,558 + +0.2 424,558 + +0.6 424,559 - +1.6 424,559 - -2.9 424,559 - -2.0 424,559 - -2.9 424,559 - -0.8 424,651 + +0.8 424,651 + +0.6 424,651 + -1.0 424,651 + -0.4 424,652 - +0.6 424,652 - -1.3 424,652 - +2.4 424,652 - -0.8 424,652 - +1.2 424,652 - -1.6 424,652 - -1.3 424,652 - -0.3 424,652 - -0.4 424,652 - -0.3 424,652 - -1.4 424,653 + -1.3 424,653 + +0.8 424,653 + +1.1 424,653 + -3.0 424,653 + -0.4 424,653 + -1.4 424,653 + +0.4 424,653 + +0.9 424,653 + +0.5 424,653 + -0.9 424,653 + +1.0 424,653 + +0.3 424,654 - +0.4 424,654 - +0.6 424,654 - +0.1 424,654 - -1.0 424,654 - +0.7 424,654 - -1.4 424,654 - +0.6 424,654 - +1.1 424,654 - +0.5 424,654 - +0.2 424,654 - +2.6 424,654 - +0.6 424,657 + +0.7 424,657 + -0.3 424,658 - +0.5 424,658 - +3.1 424,739 - IAI47_01940 0.32 -2.1 424,748 + IAI47_01940 0.37 +0.1 424,748 + IAI47_01940 0.37 -1.0 424,748 + IAI47_01940 0.37 -0.4 424,749 - IAI47_01940 0.37 -2.5 424,749 - IAI47_01940 0.37 -0.4 424,798 + IAI47_01940 0.66 -0.4 424,844 + -0.5 424,844 + -2.4 424,845 - +0.2 424,845 - -1.2 424,853 + +1.6 424,853 + +1.7 424,853 + -0.5 424,853 + +1.6 424,854 - +0.8 424,854 - +0.7 424,854 - -0.3 424,854 - -0.2 424,854 - -1.3 424,854 - -1.3 424,854 - -1.0 424,854 - -0.6 424,854 - -1.8 424,856 + -0.1 424,878 + +0.5 424,878 + -0.0 424,879 - -1.0 424,879 - -0.8 424,962 - IAI47_01945 0.20 -0.4 424,962 - IAI47_01945 0.20 +1.3 425,000 + IAI47_01945 0.26 -1.4 425,055 + IAI47_01945 0.35 -0.4 425,055 + IAI47_01945 0.35 -1.9 425,055 + IAI47_01945 0.35 -1.4 425,055 + IAI47_01945 0.35 +0.0 425,055 + IAI47_01945 0.35 +2.1 425,056 - IAI47_01945 0.36 +0.8 425,056 - IAI47_01945 0.36 +0.9 425,056 - IAI47_01945 0.36 +1.6 425,087 + IAI47_01945 0.41 +0.1 425,087 + IAI47_01945 0.41 -0.4 425,087 + IAI47_01945 0.41 -1.4 425,087 + IAI47_01945 0.41 +0.6 425,088 - IAI47_01945 0.41 +0.6 425,124 + IAI47_01945 0.47 -1.0 425,124 + IAI47_01945 0.47 -1.4 425,124 + IAI47_01945 0.47 +1.8 425,124 + IAI47_01945 0.47 -0.8 425,125 - IAI47_01945 0.47 +0.2 425,125 - IAI47_01945 0.47 -0.4 425,125 - IAI47_01945 0.47 -2.5 425,125 - IAI47_01945 0.47 +0.2 425,125 - IAI47_01945 0.47 -0.4 425,125 - IAI47_01945 0.47 +2.7 425,126 + IAI47_01945 0.47 +2.3 425,127 - IAI47_01945 0.47 +0.2 425,127 - IAI47_01945 0.47 -2.2 425,127 - IAI47_01945 0.47 +1.7 425,180 - IAI47_01945 0.56 -1.9 425,204 + IAI47_01945 0.60 -1.4 425,204 + IAI47_01945 0.60 -2.6 425,205 - IAI47_01945 0.61 +0.6 425,223 + IAI47_01945 0.64 +0.4 425,223 + IAI47_01945 0.64 +2.2 425,223 + IAI47_01945 0.64 +1.3 425,224 - IAI47_01945 0.64 +1.4 425,224 - IAI47_01945 0.64 -0.4 425,224 - IAI47_01945 0.64 -2.8 425,226 + IAI47_01945 0.64 +0.6 425,226 + IAI47_01945 0.64 -0.6 425,227 - IAI47_01945 0.64 +2.6 425,227 - IAI47_01945 0.64 +3.5 425,240 + IAI47_01945 0.66 -2.9 425,240 + IAI47_01945 0.66 +1.6 425,240 + IAI47_01945 0.66 +0.3 425,240 + IAI47_01945 0.66 +0.4 425,240 + IAI47_01945 0.66 -2.4 425,240 + IAI47_01945 0.66 +1.9 425,241 - IAI47_01945 0.67 -0.4 425,444 + -1.9 425,445 - -0.2 425,501 + +1.5 425,501 + -1.4 425,501 + -0.7 425,501 + +0.5 425,501 + -0.8 425,502 - +1.9 425,502 - +1.7 425,502 - -0.2 425,502 - -0.8 425,502 - +1.5 425,502 - -0.4 425,502 - -0.8 425,502 - +0.3 425,512 + +0.1 425,512 + -1.9 425,512 + -0.0 425,512 + -2.0 425,513 - +1.5 425,525 + +0.2 425,526 - +1.5 425,526 - +0.0 425,531 + -0.5 425,531 + +0.2 425,531 + +0.1 425,532 - -2.8 425,532 - +1.1 425,744 + IAI47_01950 0.46 +0.5 425,744 + IAI47_01950 0.46 -1.6 425,745 - IAI47_01950 0.46 +1.2 425,745 - IAI47_01950 0.46 +1.9 425,745 - IAI47_01950 0.46 +1.0 425,745 - IAI47_01950 0.46 +1.0 425,745 - IAI47_01950 0.46 -0.9 425,760 + IAI47_01950 0.49 +1.4 425,760 + IAI47_01950 0.49 -2.4 425,760 + IAI47_01950 0.49 +1.4 425,760 + IAI47_01950 0.49 -2.5 425,761 - IAI47_01950 0.49 -0.6 425,761 - IAI47_01950 0.49 +1.0 425,761 - IAI47_01950 0.49 -0.0 425,761 - IAI47_01950 0.49 -0.2 425,761 - IAI47_01950 0.49 +1.9 425,761 - IAI47_01950 0.49 +2.9 425,836 + IAI47_01950 0.62 -1.8 425,846 - IAI47_01950 0.64 +3.5
Or see this region's nucleotide sequence