Strain Fitness in Pantoea sp. MT58 around IAI47_01545

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01540 and IAI47_01545 are separated by 5 nucleotidesIAI47_01545 and IAI47_01550 overlap by 11 nucleotides IAI47_01540: IAI47_01540 - signal recognition particle-docking protein FtsY, at 334,664 to 336,364 _01540 IAI47_01545: IAI47_01545 - cell division ATP-binding protein FtsE, at 336,370 to 337,038 _01545 IAI47_01550: IAI47_01550 - cell division protein FtsX, at 337,028 to 338,011 _01550 Position (kb) 336 337 338Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 336.362 kb on + strandat 336.362 kb on + strandat 336.362 kb on + strandat 336.362 kb on + strandat 336.362 kb on + strandat 336.362 kb on + strandat 336.363 kb on - strandat 336.363 kb on - strandat 336.363 kb on - strandat 336.367 kb on - strandat 336.367 kb on - strandat 336.367 kb on - strandat 336.393 kb on + strandat 336.400 kb on + strandat 336.400 kb on + strandat 336.401 kb on - strandat 336.401 kb on - strandat 336.401 kb on - strandat 336.490 kb on - strand, within IAI47_01545at 336.496 kb on - strand, within IAI47_01545at 336.496 kb on - strand, within IAI47_01545at 336.496 kb on - strand, within IAI47_01545at 336.496 kb on - strand, within IAI47_01545at 336.685 kb on - strand, within IAI47_01545at 336.708 kb on + strand, within IAI47_01545at 336.708 kb on + strand, within IAI47_01545at 336.708 kb on + strand, within IAI47_01545at 336.709 kb on - strand, within IAI47_01545at 336.709 kb on - strand, within IAI47_01545at 336.738 kb on + strand, within IAI47_01545at 336.739 kb on - strand, within IAI47_01545at 336.770 kb on - strand, within IAI47_01545at 336.918 kb on + strand, within IAI47_01545at 336.978 kb on + strandat 336.978 kb on + strandat 336.978 kb on + strandat 336.978 kb on + strandat 336.979 kb on - strandat 336.979 kb on - strandat 336.979 kb on - strandat 336.983 kb on - strandat 337.036 kb on + strandat 337.037 kb on - strandat 337.046 kb on - strandat 337.046 kb on - strandat 337.087 kb on + strandat 337.088 kb on - strandat 337.088 kb on - strandat 337.088 kb on - strandat 337.088 kb on - strandat 337.125 kb on - strandat 337.192 kb on + strand, within IAI47_01550at 337.192 kb on + strand, within IAI47_01550at 337.192 kb on + strand, within IAI47_01550at 337.192 kb on + strand, within IAI47_01550at 337.226 kb on + strand, within IAI47_01550at 337.226 kb on + strand, within IAI47_01550at 337.226 kb on + strand, within IAI47_01550at 337.227 kb on - strand, within IAI47_01550at 337.227 kb on - strand, within IAI47_01550at 337.227 kb on - strand, within IAI47_01550at 337.268 kb on + strand, within IAI47_01550at 337.284 kb on + strand, within IAI47_01550at 337.284 kb on + strand, within IAI47_01550at 337.285 kb on - strand, within IAI47_01550at 337.285 kb on - strand, within IAI47_01550at 337.292 kb on + strand, within IAI47_01550at 337.292 kb on + strand, within IAI47_01550at 337.292 kb on + strand, within IAI47_01550at 337.292 kb on + strand, within IAI47_01550at 337.293 kb on - strand, within IAI47_01550at 337.293 kb on - strand, within IAI47_01550at 337.372 kb on + strand, within IAI47_01550at 337.372 kb on + strand, within IAI47_01550at 337.372 kb on + strand, within IAI47_01550at 337.372 kb on + strand, within IAI47_01550at 337.372 kb on + strand, within IAI47_01550at 337.372 kb on + strand, within IAI47_01550at 337.373 kb on - strand, within IAI47_01550at 337.373 kb on - strand, within IAI47_01550at 337.373 kb on - strand, within IAI47_01550at 337.373 kb on - strand, within IAI47_01550at 337.373 kb on - strand, within IAI47_01550at 337.373 kb on - strand, within IAI47_01550at 337.373 kb on - strand, within IAI47_01550at 337.376 kb on + strand, within IAI47_01550at 337.376 kb on + strand, within IAI47_01550at 337.376 kb on + strand, within IAI47_01550at 337.377 kb on - strand, within IAI47_01550at 337.377 kb on - strand, within IAI47_01550at 337.441 kb on + strand, within IAI47_01550at 337.442 kb on - strand, within IAI47_01550at 337.480 kb on + strand, within IAI47_01550at 337.481 kb on - strand, within IAI47_01550at 337.675 kb on + strand, within IAI47_01550at 337.676 kb on - strand, within IAI47_01550at 337.717 kb on + strand, within IAI47_01550at 337.718 kb on - strand, within IAI47_01550at 337.874 kb on + strand, within IAI47_01550at 337.875 kb on + strand, within IAI47_01550at 337.875 kb on + strand, within IAI47_01550at 337.875 kb on + strand, within IAI47_01550at 337.875 kb on + strand, within IAI47_01550at 337.875 kb on + strand, within IAI47_01550at 337.876 kb on - strand, within IAI47_01550at 337.876 kb on - strand, within IAI47_01550at 337.876 kb on - strand, within IAI47_01550at 337.876 kb on - strand, within IAI47_01550at 337.882 kb on + strand, within IAI47_01550at 337.882 kb on + strand, within IAI47_01550at 337.883 kb on - strand, within IAI47_01550at 337.933 kb on - strandat 337.981 kb on - strandat 337.989 kb on + strandat 337.989 kb on + strandat 337.990 kb on - strandat 337.990 kb on - strandat 337.990 kb on - strandat 338.000 kb on - strandat 338.000 kb on - strandat 338.010 kb on - strandat 338.033 kb on + strandat 338.033 kb on + strandat 338.035 kb on + strandat 338.035 kb on + strandat 338.035 kb on + strandat 338.035 kb on + strandat 338.036 kb on - strandat 338.036 kb on - strandat 338.036 kb on - strandat 338.036 kb on - strandat 338.036 kb on - strandat 338.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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336,362 + -0.0
336,362 + -0.3
336,362 + -0.6
336,362 + -0.7
336,362 + +2.4
336,362 + -2.3
336,363 - -0.0
336,363 - -0.3
336,363 - -0.6
336,367 - -0.3
336,367 - +2.2
336,367 - -1.2
336,393 + -1.7
336,400 + +1.7
336,400 + +0.5
336,401 - -0.7
336,401 - -0.1
336,401 - -2.0
336,490 - IAI47_01545 0.18 +0.8
336,496 - IAI47_01545 0.19 +1.6
336,496 - IAI47_01545 0.19 -0.0
336,496 - IAI47_01545 0.19 -0.2
336,496 - IAI47_01545 0.19 -0.2
336,685 - IAI47_01545 0.47 +0.7
336,708 + IAI47_01545 0.51 +2.4
336,708 + IAI47_01545 0.51 -0.2
336,708 + IAI47_01545 0.51 +0.2
336,709 - IAI47_01545 0.51 -0.2
336,709 - IAI47_01545 0.51 -0.2
336,738 + IAI47_01545 0.55 -2.0
336,739 - IAI47_01545 0.55 +0.8
336,770 - IAI47_01545 0.60 -0.2
336,918 + IAI47_01545 0.82 +1.6
336,978 + -1.2
336,978 + +0.4
336,978 + +0.8
336,978 + -0.2
336,979 - -2.2
336,979 - +1.7
336,979 - +1.3
336,983 - -1.2
337,036 + +1.6
337,037 - -1.4
337,046 - -0.7
337,046 - -0.0
337,087 + +0.2
337,088 - -1.0
337,088 - +3.3
337,088 - +1.4
337,088 - +1.0
337,125 - -0.9
337,192 + IAI47_01550 0.17 +0.6
337,192 + IAI47_01550 0.17 +1.3
337,192 + IAI47_01550 0.17 +2.8
337,192 + IAI47_01550 0.17 -0.5
337,226 + IAI47_01550 0.20 -0.0
337,226 + IAI47_01550 0.20 -0.0
337,226 + IAI47_01550 0.20 +0.6
337,227 - IAI47_01550 0.20 -2.0
337,227 - IAI47_01550 0.20 +1.2
337,227 - IAI47_01550 0.20 -0.8
337,268 + IAI47_01550 0.24 +1.0
337,284 + IAI47_01550 0.26 -0.1
337,284 + IAI47_01550 0.26 +1.0
337,285 - IAI47_01550 0.26 +0.8
337,285 - IAI47_01550 0.26 -0.4
337,292 + IAI47_01550 0.27 +0.4
337,292 + IAI47_01550 0.27 +0.7
337,292 + IAI47_01550 0.27 -0.0
337,292 + IAI47_01550 0.27 -0.2
337,293 - IAI47_01550 0.27 -0.2
337,293 - IAI47_01550 0.27 +0.6
337,372 + IAI47_01550 0.35 -1.4
337,372 + IAI47_01550 0.35 -0.0
337,372 + IAI47_01550 0.35 -0.7
337,372 + IAI47_01550 0.35 -0.7
337,372 + IAI47_01550 0.35 -0.0
337,372 + IAI47_01550 0.35 +1.8
337,373 - IAI47_01550 0.35 -0.7
337,373 - IAI47_01550 0.35 +1.4
337,373 - IAI47_01550 0.35 +0.3
337,373 - IAI47_01550 0.35 +0.9
337,373 - IAI47_01550 0.35 +1.2
337,373 - IAI47_01550 0.35 -1.0
337,373 - IAI47_01550 0.35 +1.0
337,376 + IAI47_01550 0.35 +0.9
337,376 + IAI47_01550 0.35 +2.5
337,376 + IAI47_01550 0.35 +0.9
337,377 - IAI47_01550 0.35 -0.7
337,377 - IAI47_01550 0.35 -1.6
337,441 + IAI47_01550 0.42 -1.2
337,442 - IAI47_01550 0.42 -0.2
337,480 + IAI47_01550 0.46 -1.2
337,481 - IAI47_01550 0.46 -1.6
337,675 + IAI47_01550 0.66 +0.5
337,676 - IAI47_01550 0.66 -1.2
337,717 + IAI47_01550 0.70 -1.6
337,718 - IAI47_01550 0.70 +0.8
337,874 + IAI47_01550 0.86 -1.0
337,875 + IAI47_01550 0.86 +1.6
337,875 + IAI47_01550 0.86 -2.5
337,875 + IAI47_01550 0.86 -1.0
337,875 + IAI47_01550 0.86 -0.0
337,875 + IAI47_01550 0.86 +0.8
337,876 - IAI47_01550 0.86 +0.8
337,876 - IAI47_01550 0.86 +0.3
337,876 - IAI47_01550 0.86 -0.7
337,876 - IAI47_01550 0.86 +2.1
337,882 + IAI47_01550 0.87 +3.2
337,882 + IAI47_01550 0.87 +0.8
337,883 - IAI47_01550 0.87 +1.5
337,933 - +1.3
337,981 - +0.3
337,989 + -0.9
337,989 + +2.3
337,990 - +2.3
337,990 - -1.7
337,990 - +1.3
338,000 - -1.0
338,000 - +0.5
338,010 - -0.2
338,033 + -2.4
338,033 + +2.0
338,035 + +2.7
338,035 + -0.3
338,035 + +0.3
338,035 + -3.2
338,036 - -0.0
338,036 - -2.4
338,036 - -1.3
338,036 - -0.4
338,036 - +0.6
338,036 - +0.4

Or see this region's nucleotide sequence