Strain Fitness in Pantoea sp. MT58 around IAI47_00035

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
6,763	+				+0.3
6,831	+				-1.6
6,831	+				+1.2
6,831	+				+0.1
6,832	-				-1.6
6,832	-				-1.2
6,832	-				+1.2
6,832	-				+0.6
6,832	-				+1.2
6,832	-				+1.1
6,832	-				-1.0
6,839	+				+1.4
6,839	+				+2.3
6,839	+				+0.0
6,839	+				-0.6
6,839	+				+2.4
6,840	-				+0.1
6,840	-				+0.0
6,888	+				-1.2
6,981	-				+1.0
7,015	+				-0.6
7,015	+				+0.3
7,016	-				-1.0
7,023	+				+1.6
7,023	+				+0.6
7,023	+				-0.7
7,023	+				-2.2
7,024	-				-0.1
7,024	-				+1.6
7,024	-				+4.4
7,024	-				-1.1
7,024	-				+0.6
7,085	+				+1.5
7,086	+				+0.8
7,086	+				+0.0
7,086	+				-1.2
7,086	+				-0.3
7,086	+				+1.8
7,087	-				+0.2
7,087	-				+0.1
7,087	-				+2.2
7,087	-				-0.2
7,179	+		IAI47_00030	0.18	-1.4
7,179	+		IAI47_00030	0.18	-1.9
7,179	+		IAI47_00030	0.18	-0.6
7,180	-		IAI47_00030	0.18	-0.4
7,180	-		IAI47_00030	0.18	+1.6
7,180	-		IAI47_00030	0.18	-0.4
7,180	-		IAI47_00030	0.18	-1.0
7,180	-		IAI47_00030	0.18	+0.0
7,180	-		IAI47_00030	0.18	-1.6
7,191	+		IAI47_00030	0.20	-2.2
7,191	+		IAI47_00030	0.20	-2.3
7,191	+		IAI47_00030	0.20	+0.8
7,192	-		IAI47_00030	0.20	+1.6
7,192	-		IAI47_00030	0.20	-1.0
7,192	-		IAI47_00030	0.20	+0.0
7,217	+		IAI47_00030	0.23	-0.6
7,288	+		IAI47_00030	0.33	+0.0
7,288	+		IAI47_00030	0.33	+0.0
7,289	-		IAI47_00030	0.34	+0.9
7,289	-		IAI47_00030	0.34	+0.5
7,447	+		IAI47_00030	0.56	+0.7
7,447	+		IAI47_00030	0.56	+1.4
7,447	+		IAI47_00030	0.56	+0.3
7,447	+		IAI47_00030	0.56	+1.4
7,447	+		IAI47_00030	0.56	-0.6
7,447	+		IAI47_00030	0.56	-1.9
7,447	+		IAI47_00030	0.56	-0.7
7,447	+		IAI47_00030	0.56	+2.9
7,447	+		IAI47_00030	0.56	-2.3
7,447	+		IAI47_00030	0.56	-0.2
7,448	-		IAI47_00030	0.56	+1.1
7,448	-		IAI47_00030	0.56	-1.6
7,448	-		IAI47_00030	0.56	+2.5
7,448	-		IAI47_00030	0.56	+2.6
7,448	-		IAI47_00030	0.56	-1.4
7,448	-		IAI47_00030	0.56	-1.0
7,448	-		IAI47_00030	0.56	+2.0
7,448	-		IAI47_00030	0.56	-0.6
7,449	+		IAI47_00030	0.57	+1.9
7,449	+		IAI47_00030	0.57	-0.1
7,449	+		IAI47_00030	0.57	+2.2
7,449	+		IAI47_00030	0.57	-0.2
7,449	+		IAI47_00030	0.57	+1.5
7,449	+		IAI47_00030	0.57	+0.0
7,449	+		IAI47_00030	0.57	+1.1
7,450	-		IAI47_00030	0.57	-1.1
7,450	-		IAI47_00030	0.57	+1.6
7,450	-		IAI47_00030	0.57	+2.9
7,450	-		IAI47_00030	0.57	+1.6
7,450	-		IAI47_00030	0.57	+3.6
7,450	-		IAI47_00030	0.57	-1.2
7,450	-		IAI47_00030	0.57	+1.0
7,450	-		IAI47_00030	0.57	+1.8
7,489	-		IAI47_00030	0.62	-2.3
7,557	+		IAI47_00030	0.72	+1.6
7,557	+		IAI47_00030	0.72	+0.1
7,557	+		IAI47_00030	0.72	+1.8
7,557	+		IAI47_00030	0.72	+0.4
7,557	+		IAI47_00030	0.72	+0.1
7,558	-		IAI47_00030	0.72	+0.9
7,603	+		IAI47_00030	0.79	+1.2
7,603	+		IAI47_00030	0.79	+0.2
7,603	+		IAI47_00030	0.79	-1.4
7,603	+		IAI47_00030	0.79	+1.6
7,603	+		IAI47_00030	0.79	-1.1
7,603	+		IAI47_00030	0.79	+0.6
7,603	+		IAI47_00030	0.79	-0.4
7,603	+		IAI47_00030	0.79	+0.2
7,603	+		IAI47_00030	0.79	+1.6
7,603	+		IAI47_00030	0.79	+3.8
7,603	+		IAI47_00030	0.79	-0.5
7,603	+		IAI47_00030	0.79	+1.0
7,603	+		IAI47_00030	0.79	+1.6
7,603	+		IAI47_00030	0.79	+0.6
7,603	+		IAI47_00030	0.79	-0.3
7,603	+		IAI47_00030	0.79	-1.6
7,603	+		IAI47_00030	0.79	-0.1
7,603	+		IAI47_00030	0.79	+0.7
7,603	+		IAI47_00030	0.79	-0.4
7,603	+		IAI47_00030	0.79	+0.1
7,603	+		IAI47_00030	0.79	+0.7
7,603	+		IAI47_00030	0.79	+0.7
7,604	-		IAI47_00030	0.79	-0.3
7,604	-		IAI47_00030	0.79	-1.2
7,604	-		IAI47_00030	0.79	+1.4
7,604	-		IAI47_00030	0.79	-1.0
7,604	-		IAI47_00030	0.79	+0.4
7,604	-		IAI47_00030	0.79	-0.4
7,604	-		IAI47_00030	0.79	-0.1
7,604	-		IAI47_00030	0.79	+0.3
7,604	-		IAI47_00030	0.79	+1.0
7,604	-		IAI47_00030	0.79	-1.9
7,604	-		IAI47_00030	0.79	+1.0
7,604	-		IAI47_00030	0.79	-1.7
7,604	-		IAI47_00030	0.79	-2.9
7,604	-		IAI47_00030	0.79	+1.4
7,604	-		IAI47_00030	0.79	+1.5
7,604	-		IAI47_00030	0.79	+0.6
7,604	-		IAI47_00030	0.79	+0.3
7,604	-		IAI47_00030	0.79	-0.7
7,604	-		IAI47_00030	0.79	-0.2
7,604	-		IAI47_00030	0.79	-0.4
7,605	+		IAI47_00030	0.79	+1.9
7,605	+		IAI47_00030	0.79	+2.2
7,605	+		IAI47_00030	0.79	+1.6
7,606	-		IAI47_00030	0.79	+0.3
7,632	+		IAI47_00030	0.83	-1.6
7,647	+		IAI47_00030	0.85	+0.9
7,647	+		IAI47_00030	0.85	+0.3
7,647	+		IAI47_00030	0.85	+1.6
7,647	+		IAI47_00030	0.85	-0.3
7,647	+		IAI47_00030	0.85	-0.7
7,647	+		IAI47_00030	0.85	-2.2
7,647	+		IAI47_00030	0.85	-0.0
7,648	-		IAI47_00030	0.85	-1.2
7,648	-		IAI47_00030	0.85	-0.5
7,648	-		IAI47_00030	0.85	-0.9
7,655	+		IAI47_00030	0.86	+0.2
7,655	+		IAI47_00030	0.86	-1.7
7,656	-		IAI47_00030	0.86	+1.2
7,656	-		IAI47_00030	0.86	-2.5
7,656	-		IAI47_00030	0.86	+0.5
7,758	+				+1.7
7,758	+				-1.2
7,758	+				-0.7
7,758	+				+1.2
7,759	-				-0.8
7,759	-				+1.3
7,759	-				-0.4
7,759	-				+1.6
7,759	-				+1.3
7,759	-				+0.0
7,759	-				+0.2
7,759	-				+0.9
7,759	-				-2.5
7,759	-				-1.7
7,759	-				+1.6
7,760	+				-0.4
7,760	+				+1.3
7,760	+				-0.7
7,761	-				+1.6
7,803	+				+1.0
7,804	-				+1.6
7,804	-				+0.6
7,808	+				+0.0
7,809	-				-1.9
7,868	+		IAI47_00035	0.13	+2.9
7,868	+		IAI47_00035	0.13	-1.9
7,869	-		IAI47_00035	0.14	+1.3
7,882	+		IAI47_00035	0.15	+0.1
7,882	+		IAI47_00035	0.15	-1.1
7,882	+		IAI47_00035	0.15	+0.3
7,882	+		IAI47_00035	0.15	-2.0
7,883	-		IAI47_00035	0.15	+0.7
7,883	-		IAI47_00035	0.15	+2.3
7,883	-		IAI47_00035	0.15	-0.7
7,952	+		IAI47_00035	0.23	+1.0
7,977	+		IAI47_00035	0.26	-0.7
7,977	+		IAI47_00035	0.26	+1.1
7,977	+		IAI47_00035	0.26	+0.2
7,977	+		IAI47_00035	0.26	+0.6
7,977	+		IAI47_00035	0.26	+1.6
7,977	+		IAI47_00035	0.26	+0.6
7,978	-		IAI47_00035	0.26	+1.3
7,978	-		IAI47_00035	0.26	-2.2
7,978	-		IAI47_00035	0.26	-2.1
7,978	-		IAI47_00035	0.26	-0.6
8,084	+		IAI47_00035	0.38	-0.4
8,084	+		IAI47_00035	0.38	-1.6
8,090	+		IAI47_00035	0.39	-1.6
8,091	-		IAI47_00035	0.39	-0.6
8,091	-		IAI47_00035	0.39	-1.8
8,116	+		IAI47_00035	0.42	+0.4
8,116	+		IAI47_00035	0.42	-0.6
8,116	+		IAI47_00035	0.42	-0.8
8,117	-		IAI47_00035	0.42	-0.4
8,117	-				-0.4
8,117	-		IAI47_00035	0.42	-0.1
8,117	-		IAI47_00035	0.42	-0.7
8,117	-		IAI47_00035	0.42	+0.9
8,148	+		IAI47_00035	0.45	-1.6
8,148	+		IAI47_00035	0.45	+2.3
8,148	+		IAI47_00035	0.45	-0.4
8,148	+		IAI47_00035	0.45	-1.7
8,148	+		IAI47_00035	0.45	-1.4
8,149	-		IAI47_00035	0.45	+1.6
8,149	-		IAI47_00035	0.45	+2.6
8,315	+		IAI47_00035	0.64	-0.8
8,315	+		IAI47_00035	0.64	+0.3
8,315	+		IAI47_00035	0.64	-0.9
8,315	+		IAI47_00035	0.64	-1.8
8,315	+		IAI47_00035	0.64	+0.6
8,315	+		IAI47_00035	0.64	+0.0
8,315	+		IAI47_00035	0.64	-2.0
8,316	-		IAI47_00035	0.64	-2.2
8,316	-		IAI47_00035	0.64	+1.3
8,316	-		IAI47_00035	0.64	+1.3
8,316	-		IAI47_00035	0.64	-0.4
8,316	-		IAI47_00035	0.64	-1.6
8,316	-		IAI47_00035	0.64	+1.1
8,316	-		IAI47_00035	0.64	-0.7
8,357	-		IAI47_00035	0.69	+0.6
8,495	+		IAI47_00035	0.85	-0.4
8,495	+		IAI47_00035	0.85	-1.4
8,495	+		IAI47_00035	0.85	-0.8
8,495	+		IAI47_00035	0.85	+0.0
8,496	-		IAI47_00035	0.85	+0.6
8,496	-		IAI47_00035	0.85	-0.7
8,496	-		IAI47_00035	0.85	+0.6
8,496	-		IAI47_00035	0.85	+1.2
8,526	+		IAI47_00035	0.88	-0.4
8,527	-		IAI47_00035	0.88	+1.1
8,527	-		IAI47_00035	0.88	+1.4
8,599	+				-2.1
8,599	+				-1.0
8,599	+				-2.1
8,599	+				+0.6
8,599	+				+0.8
8,600	-				+3.0
8,600	-				+0.3
8,628	+				-0.2
8,628	+				+0.4
8,629	-				+0.7
8,629	-				+2.2
8,629	-				-1.4
8,633	+				+1.6
8,633	+				-0.7
8,771	+		IAI47_00040	0.25	+0.3
8,772	-		IAI47_00040	0.26	+0.4
8,772	-		IAI47_00040	0.26	+0.2
8,808	+		IAI47_00040	0.31	+1.9
8,808	+		IAI47_00040	0.31	+1.7
8,808	+		IAI47_00040	0.31	+0.7
8,808	+		IAI47_00040	0.31	+3.6
8,809	-		IAI47_00040	0.32	+2.2
8,809	-		IAI47_00040	0.32	+0.0
8,874	+		IAI47_00040	0.42	+1.4
8,874	+		IAI47_00040	0.42	+0.5
8,874	+		IAI47_00040	0.42	+0.4
8,875	-		IAI47_00040	0.42	-0.7
8,875	-		IAI47_00040	0.42	-4.0
8,877	+		IAI47_00040	0.43	-0.4
8,877	+		IAI47_00040	0.43	+0.6
8,878	-		IAI47_00040	0.43	-1.2
8,878	-		IAI47_00040	0.43	-1.4
8,878	-		IAI47_00040	0.43	+0.4
8,958	+		IAI47_00040	0.56	+1.3
9,022	+		IAI47_00040	0.66	+1.5
9,022	+		IAI47_00040	0.66	-0.6
9,022	+		IAI47_00040	0.66	+0.5
9,022	+		IAI47_00040	0.66	-0.5
9,023	-		IAI47_00040	0.66	+0.5
9,023	-		IAI47_00040	0.66	+0.1
9,137	+		IAI47_00040	0.85	-0.6
9,137	+		IAI47_00040	0.85	-1.7
9,138	-		IAI47_00040	0.85	+1.6
9,138	-		IAI47_00040	0.85	-1.1
9,138	-		IAI47_00040	0.85	-2.1
9,152	-		IAI47_00040	0.87	-1.0
9,182	+				-1.0
9,182	+				+0.1
9,183	-				-1.2
9,205	-				-2.8
9,211	+				+0.3
9,211	+				-0.2
9,211	+				+2.0
9,211	+				-0.9
9,211	+				-0.1
9,211	+				-1.6
9,211	+				+1.0
9,211	+				+0.4
9,211	+				-1.4
9,211	+				+1.8
9,211	+				+1.9
9,211	+				-0.6
9,211	+				+0.1
9,211	+				+0.8
9,211	+				-0.7
9,211	+				-0.1
9,211	+				+2.6
9,211	+				+0.9
9,211	+				+2.2
9,211	+				+0.4
9,212	-				+1.1
9,212	-				-3.2
9,212	-				-1.0
9,212	-				-0.5
9,212	-				-3.7
9,212	-				-0.7
9,212	-				+0.0
9,212	-				+0.6
9,212	-				+0.7
9,213	+				-0.5
9,213	+				-0.7
9,213	+				-0.2
9,213	+				+0.0
9,213	+				-0.9
9,213	+				-3.3
9,213	+				+0.2
9,213	+				+1.7
9,213	+				+0.0
9,213	+				+0.4
9,213	+				+0.6
9,213	+				+0.1
9,213	+				-0.1
9,213	+				-0.7
9,213	+				+0.9
9,213	+				+0.9
9,213	+				-2.6
9,213	+				-0.4
9,213	+				+0.6
9,214	-				+0.6
9,214	-				-1.2
9,214	-				+1.3
9,214	-				+0.2
9,214	-				-0.2
9,214	-				-0.1
9,214	-				+1.6
9,214	-				+0.6
9,214	-				+0.7
9,214	-				-1.1
9,214	-				-0.4
9,214	-				+1.3
9,214	-				+1.6
9,214	-				+0.5
9,214	-				-1.9
9,224	+				+2.0
9,224	+				+0.2
9,225	-				+1.1
9,225	-				+2.6
9,225	-				-1.6
9,252	+				+2.6
9,252	+				+0.6
9,253	-				+1.2
9,253	-				+0.2
9,286	+				+2.6
9,286	+				+2.2
9,287	-				+0.6
9,287	-				+0.3
9,287	-				+1.2
9,287	-				+1.0
9,370	+		IAI47_00045	0.12	-1.4
9,370	+		IAI47_00045	0.12	+0.0
9,370	+		IAI47_00045	0.12	+2.5
9,370	+		IAI47_00045	0.12	-0.4
9,371	-		IAI47_00045	0.12	+0.3
9,371	-		IAI47_00045	0.12	-1.2
9,371	-		IAI47_00045	0.12	+0.4
9,371	-		IAI47_00045	0.12	-1.9
9,371	-		IAI47_00045	0.12	+0.0
9,415	+		IAI47_00045	0.16	-0.7
9,415	+		IAI47_00045	0.16	+0.0
9,416	-		IAI47_00045	0.16	+1.0
9,424	+		IAI47_00045	0.17	+2.0
9,424	+		IAI47_00045	0.17	+1.2
9,424	+		IAI47_00045	0.17	+1.1
9,424	+		IAI47_00045	0.17	+0.4
9,425	-		IAI47_00045	0.17	+1.6
9,425	-		IAI47_00045	0.17	+0.3
9,425	-		IAI47_00045	0.17	+1.6
9,425	-		IAI47_00045	0.17	-0.1
9,425	-		IAI47_00045	0.17	+0.9
9,429	+		IAI47_00045	0.17	+1.0
9,430	-		IAI47_00045	0.18	+1.6
9,430	-		IAI47_00045	0.18	+1.1
9,430	-		IAI47_00045	0.18	-1.9
9,430	-		IAI47_00045	0.18	+1.6
9,430	-		IAI47_00045	0.18	+1.2
9,430	-		IAI47_00045	0.18	-2.4
9,445	-		IAI47_00045	0.19	-0.9
9,534	+		IAI47_00045	0.27	+0.0
9,534	+		IAI47_00045	0.27	+0.6
9,541	+		IAI47_00045	0.27	+0.5
9,542	-		IAI47_00045	0.27	-0.5
9,566	+		IAI47_00045	0.29	-0.6
9,566	+		IAI47_00045	0.29	+0.4
9,567	-		IAI47_00045	0.30	-0.3
9,567	-		IAI47_00045	0.30	+0.6
9,567	-		IAI47_00045	0.30	+0.9
9,569	+		IAI47_00045	0.30	-1.7
9,569	+		IAI47_00045	0.30	-1.2
9,569	+		IAI47_00045	0.30	+0.2
9,569	+		IAI47_00045	0.30	+0.0
9,570	-		IAI47_00045	0.30	-1.3
9,570	-		IAI47_00045	0.30	-2.6
9,576	+		IAI47_00045	0.30	+1.1
9,576	+		IAI47_00045	0.30	+0.9
9,576	+		IAI47_00045	0.30	-0.5
9,577	-		IAI47_00045	0.30	+2.5
9,577	-		IAI47_00045	0.30	+1.7