Strain Fitness in Pantoea sp. MT58 around IAI47_18825

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
4,011,681	+		IAI47_18815	0.80	-0.6
4,011,681	+		IAI47_18815	0.80	+1.6
4,011,681	+		IAI47_18815	0.80	-0.2
4,011,681	+		IAI47_18815	0.80	-0.2
4,011,681	+		IAI47_18815	0.80	+0.7
4,011,681	+		IAI47_18815	0.80	-0.3
4,011,681	+		IAI47_18815	0.80	+1.2
4,011,681	+		IAI47_18815	0.80	-0.6
4,011,681	+		IAI47_18815	0.80	+0.2
4,011,681	+		IAI47_18815	0.80	-0.4
4,011,681	+		IAI47_18815	0.80	+1.5
4,011,681	+		IAI47_18815	0.80	+1.3
4,011,681	+		IAI47_18815	0.80	+0.6
4,011,681	+		IAI47_18815	0.80	-1.4
4,011,682	-		IAI47_18815	0.80	+0.3
4,011,682	-		IAI47_18815	0.80	+0.9
4,011,682	-		IAI47_18815	0.80	-0.4
4,011,682	-		IAI47_18815	0.80	+1.4
4,011,682	-		IAI47_18815	0.80	+1.6
4,011,682	-		IAI47_18815	0.80	-0.2
4,011,682	-		IAI47_18815	0.80	-1.1
4,011,682	-		IAI47_18815	0.80	-1.2
4,011,682	-		IAI47_18815	0.80	-1.4
4,011,682	-		IAI47_18815	0.80	-0.8
4,011,682	-		IAI47_18815	0.80	+1.5
4,011,682	-		IAI47_18815	0.80	+0.5
4,011,682	-		IAI47_18815	0.80	-1.1
4,011,682	-		IAI47_18815	0.80	+2.3
4,011,771	+				+3.5
4,011,772	-				-0.8
4,011,772	-				-2.4
4,011,772	-				+0.3
4,011,772	-				+2.3
4,011,772	-				+1.5
4,011,772	-				+0.5
4,011,777	+				+1.1
4,011,777	+				+1.5
4,011,777	+				+0.6
4,011,777	+				+0.3
4,011,777	+				-0.1
4,011,777	+				-1.1
4,011,777	+				+0.5
4,011,777	+				+0.3
4,011,777	+				-0.9
4,011,777	+				-0.6
4,011,777	+				-1.4
4,011,778	-				+0.3
4,011,778	-				+0.3
4,011,778	-				+0.1
4,011,778	-				+0.9
4,011,778	-				-0.1
4,011,814	+				+0.6
4,011,815	-				-0.5
4,011,857	+				-0.9
4,011,857	+				+0.5
4,011,857	+				+0.4
4,011,858	-				+1.8
4,011,858	-				-0.1
4,011,858	-				+0.4
4,011,858	-				+0.2
4,011,875	+				+0.2
4,011,875	+				+0.6
4,011,876	-				-0.2
4,011,887	+				-1.1
4,011,887	+				+1.9
4,011,887	+				+1.3
4,011,887	+				+0.4
4,011,916	+				-0.5
4,011,916	+				-1.5
4,011,916	+				-0.9
4,011,917	-				+0.4
4,011,917	-				+1.8
4,011,932	+				+1.1
4,011,932	+				-1.4
4,011,932	+				-0.6
4,011,933	-				+0.3
4,011,933	-				-0.1
4,012,049	+				+1.0
4,012,049	+				+1.0
4,012,050	-				-1.1
4,012,050	-				-0.1
4,012,050	-				-0.6
4,012,050	-				-1.1
4,012,050	-				+1.9
4,012,105	+				+0.2
4,012,105	+				+0.2
4,012,148	-				+0.5
4,012,184	+				-0.1
4,012,185	-				+0.2
4,012,185	-				+1.3
4,012,265	+		IAI47_18820	0.22	+0.9
4,012,266	-		IAI47_18820	0.22	-0.3
4,012,266	-		IAI47_18820	0.22	-2.2
4,012,267	+		IAI47_18820	0.22	-1.6
4,012,268	-		IAI47_18820	0.22	+0.5
4,012,388	+		IAI47_18820	0.48	-2.1
4,012,388	+		IAI47_18820	0.48	-1.2
4,012,389	-		IAI47_18820	0.48	+1.3
4,012,429	-		IAI47_18820	0.57	-0.6
4,012,429	-		IAI47_18820	0.57	-0.2
4,012,442	+		IAI47_18820	0.59	-0.7
4,012,442	+		IAI47_18820	0.59	+0.5
4,012,745	+		IAI47_18825	0.12	-1.1
4,012,746	-		IAI47_18825	0.12	+0.1
4,012,775	+		IAI47_18825	0.17	+0.1
4,012,776	-		IAI47_18825	0.17	+0.5
4,012,776	-		IAI47_18825	0.17	-1.2
4,012,776	-		IAI47_18825	0.17	-0.6
4,012,875	-		IAI47_18825	0.34	-0.1
4,012,935	+		IAI47_18825	0.44	-1.4
4,012,944	+		IAI47_18825	0.46	-1.6
4,012,985	+		IAI47_18825	0.52	+0.8
4,012,985	+		IAI47_18825	0.52	-0.1
4,012,986	-		IAI47_18825	0.53	-0.1
4,012,986	-		IAI47_18825	0.53	+0.9
4,013,008	+		IAI47_18825	0.56	-0.3
4,013,008	+		IAI47_18825	0.56	-1.1
4,013,009	-		IAI47_18825	0.57	+1.3
4,013,009	-		IAI47_18825	0.57	+1.3
4,013,095	+		IAI47_18825	0.71	-0.5
4,013,156	+		IAI47_18825	0.81	-0.6
4,013,156	+		IAI47_18825	0.81	+0.5
4,013,156	+		IAI47_18825	0.81	-0.0
4,013,156	+		IAI47_18825	0.81	+0.1
4,013,157	-		IAI47_18825	0.82	+1.4
4,013,157	-		IAI47_18825	0.82	-0.4
4,013,157	-		IAI47_18825	0.82	-0.1
4,013,157	-		IAI47_18825	0.82	+0.9
4,013,190	+		IAI47_18825	0.87	-0.1
4,013,190	+		IAI47_18825	0.87	+0.8
4,013,191	-		IAI47_18825	0.87	+0.3
4,013,191	-		IAI47_18825	0.87	+0.9
4,013,191	-		IAI47_18825	0.87	-1.1
4,013,191	-		IAI47_18825	0.87	-0.2
4,013,191	-		IAI47_18825	0.87	+0.8
4,013,191	-		IAI47_18825	0.87	+1.4
4,013,201	+		IAI47_18825	0.89	-0.1
4,013,201	+		IAI47_18825	0.89	+0.1
4,013,223	+				+0.3
4,013,224	-				+0.1
4,013,224	-				-0.9
4,013,224	-				-1.1
4,013,259	+				+0.4
4,013,259	+				+0.2
4,013,259	+				-0.2
4,013,259	+				+1.9
4,013,259	+				-0.1
4,013,260	-				-2.1
4,013,260	-				+1.2
4,013,267	+				+0.6
4,013,267	+				-1.6
4,013,267	+				+0.9
4,013,267	+				+0.4
4,013,267	+				-0.1
4,013,267	+				-0.3
4,013,267	+				-0.3
4,013,267	+				-0.6
4,013,267	+				-1.1
4,013,268	-				+0.5
4,013,268	-				-0.5
4,013,268	-				-0.9
4,013,268	-				+1.4
4,013,279	+				-0.7
4,013,374	+				+0.4
4,013,375	-				-1.1
4,013,375	-				-0.3
4,013,375	-				-0.3
4,013,375	-				-0.5
4,013,405	-				+1.5
4,013,406	+				-0.6
4,013,406	+				+1.9
4,013,406	+				-0.5
4,013,406	+				+0.1
4,013,406	+				+0.4
4,013,406	+				+0.7
4,013,432	+				-0.1
4,013,433	-				-0.5
4,013,437	+				-0.2
4,013,437	+				+0.7
4,013,437	+				+0.9
4,013,438	-				-0.6
4,013,438	-				-1.6
4,013,438	-				+1.3
4,013,467	+				+0.4
4,013,467	+				+0.3
4,013,467	+				-1.9
4,013,478	-				+0.5
4,013,509	+				+1.5
4,013,532	+				+1.1
4,013,533	-				+0.2
4,013,533	-				-0.3
4,013,533	-				-0.8
4,013,533	-				+0.2
4,013,533	-				-1.1
4,013,533	-				-1.2
4,013,533	-				-0.9
4,013,533	-				+0.1
4,014,122	-		IAI47_18830	0.43	-2.6
4,014,122	-		IAI47_18830	0.43	-2.8