Strain Fitness in Pantoea sp. MT58 around IAI47_07085

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
1,494,159	+				-2.3
1,494,230	+		IAI47_07080	0.14	-3.0
1,494,231	-		IAI47_07080	0.14	-0.1
1,494,290	+		IAI47_07080	0.19	-1.7
1,494,290	+		IAI47_07080	0.19	-3.0
1,494,290	+		IAI47_07080	0.19	-1.1
1,494,290	+		IAI47_07080	0.19	-4.5
1,494,291	-		IAI47_07080	0.20	-2.6
1,494,334	-		IAI47_07080	0.24	-4.3
1,494,334	-		IAI47_07080	0.24	-3.1
1,494,334	-		IAI47_07080	0.24	-1.1
1,494,447	+		IAI47_07080	0.34	-2.1
1,494,474	+		IAI47_07080	0.37	-5.5
1,494,474	+		IAI47_07080	0.37	-1.4
1,494,474	+		IAI47_07080	0.37	-3.0
1,494,474	+		IAI47_07080	0.37	-2.4
1,494,475	-		IAI47_07080	0.37	-2.7
1,494,476	+		IAI47_07080	0.37	-2.7
1,494,476	+		IAI47_07080	0.37	-2.1
1,494,476	+		IAI47_07080	0.37	-2.3
1,494,476	+		IAI47_07080	0.37	-3.1
1,494,477	-		IAI47_07080	0.37	-0.7
1,494,477	-		IAI47_07080	0.37	-5.6
1,494,477	-		IAI47_07080	0.37	-3.6
1,494,477	-		IAI47_07080	0.37	-2.3
1,494,477	-		IAI47_07080	0.37	-3.3
1,494,568	-		IAI47_07080	0.46	-1.4
1,494,630	+		IAI47_07080	0.51	-1.4
1,494,630	+		IAI47_07080	0.51	-2.3
1,494,630	+		IAI47_07080	0.51	-2.6
1,494,630	+		IAI47_07080	0.51	-1.1
1,494,631	-		IAI47_07080	0.51	-1.1
1,494,631	-		IAI47_07080	0.51	-1.9
1,494,631	-		IAI47_07080	0.51	-2.1
1,494,631	-		IAI47_07080	0.51	-2.1
1,494,631	-		IAI47_07080	0.51	-1.9
1,494,773	+		IAI47_07080	0.65	-2.8
1,494,773	+		IAI47_07080	0.65	-3.2
1,494,773	+		IAI47_07080	0.65	-0.1
1,494,773	+		IAI47_07080	0.65	-2.4
1,494,774	-		IAI47_07080	0.65	-4.1
1,494,774	-		IAI47_07080	0.65	-2.7
1,494,774	-		IAI47_07080	0.65	-3.1
1,494,774	-		IAI47_07080	0.65	-1.7
1,494,774	-		IAI47_07080	0.65	-3.1
1,494,774	-		IAI47_07080	0.65	-2.3
1,494,774	-		IAI47_07080	0.65	-2.9
1,494,774	-		IAI47_07080	0.65	-1.1
1,494,786	+		IAI47_07080	0.66	-2.1
1,494,787	-		IAI47_07080	0.66	-2.9
1,494,990	+		IAI47_07080	0.85	-1.4
1,494,990	+		IAI47_07080	0.85	-1.4
1,494,991	-		IAI47_07080	0.85	-2.6
1,495,113	+				-0.1
1,495,113	+				-3.6
1,495,113	+				-2.1
1,495,114	-				-1.7
1,495,114	-				-2.6
1,495,114	-				-1.7
1,495,114	-				-1.7
1,495,114	-				-1.1
1,495,128	+				-3.0
1,495,129	-				-1.4
1,495,330	+		IAI47_07085	0.17	-4.3
1,495,330	+		IAI47_07085	0.17	-1.7
1,495,330	+		IAI47_07085	0.17	-1.9
1,495,330	+		IAI47_07085	0.17	-1.7
1,495,330	+		IAI47_07085	0.17	-2.9
1,495,330	+		IAI47_07085	0.17	-2.1
1,495,330	+		IAI47_07085	0.17	-2.4
1,495,330	+		IAI47_07085	0.17	-3.0
1,495,330	+		IAI47_07085	0.17	-3.4
1,495,330	+		IAI47_07085	0.17	-1.9
1,495,330	+		IAI47_07085	0.17	-3.7
1,495,330	+		IAI47_07085	0.17	-3.3
1,495,331	-		IAI47_07085	0.17	-2.4
1,495,331	-		IAI47_07085	0.17	-4.0
1,495,331	-		IAI47_07085	0.17	-3.3
1,495,331	-		IAI47_07085	0.17	-2.4
1,495,331	-		IAI47_07085	0.17	-3.5
1,495,331	-		IAI47_07085	0.17	-5.2
1,495,331	-		IAI47_07085	0.17	-2.4
1,495,331	-		IAI47_07085	0.17	-2.4
1,495,331	-		IAI47_07085	0.17	-0.1
1,495,331	-		IAI47_07085	0.17	-1.9
1,495,331	-		IAI47_07085	0.17	-1.7
1,495,331	-		IAI47_07085	0.17	-3.9
1,495,331	-		IAI47_07085	0.17	-1.7
1,495,331	-		IAI47_07085	0.17	-3.3
1,495,331	-		IAI47_07085	0.17	-3.3
1,495,331	-		IAI47_07085	0.17	-3.3
1,495,331	-		IAI47_07085	0.17	-0.7
1,495,331	-		IAI47_07085	0.17	-2.1
1,495,334	+		IAI47_07085	0.17	-2.8
1,495,334	+		IAI47_07085	0.17	-4.1
1,495,334	+		IAI47_07085	0.17	-1.7
1,495,335	-		IAI47_07085	0.18	-3.6
1,495,335	-		IAI47_07085	0.18	-2.3
1,495,335	-		IAI47_07085	0.18	-2.8
1,495,442	+		IAI47_07085	0.27	-1.7
1,495,442	+		IAI47_07085	0.27	-3.4
1,495,443	-		IAI47_07085	0.28	-1.9
1,495,443	-		IAI47_07085	0.28	-4.3
1,495,538	+		IAI47_07085	0.36	-2.4
1,495,539	-		IAI47_07085	0.36	-3.1
1,495,539	-		IAI47_07085	0.36	-2.8
1,495,539	-		IAI47_07085	0.36	-3.1
1,495,595	+		IAI47_07085	0.42	-1.7
1,495,595	+		IAI47_07085	0.42	-2.6
1,495,596	-		IAI47_07085	0.42	-3.1
1,495,596	-		IAI47_07085	0.42	-1.9
1,495,596	-		IAI47_07085	0.42	-2.6
1,495,596	-		IAI47_07085	0.42	-2.7
1,495,596	-		IAI47_07085	0.42	-0.7
1,495,666	+		IAI47_07085	0.48	-1.7
1,495,666	+		IAI47_07085	0.48	-2.6
1,495,666	+		IAI47_07085	0.48	-3.9
1,495,666	+		IAI47_07085	0.48	-4.0
1,495,666	+		IAI47_07085	0.48	-2.6
1,495,666	+		IAI47_07085	0.48	-1.9
1,495,667	-		IAI47_07085	0.48	-3.1
1,495,667	-		IAI47_07085	0.48	-0.1
1,495,667	-		IAI47_07085	0.48	-2.7
1,495,667	-		IAI47_07085	0.48	-2.1
1,495,667	-		IAI47_07085	0.48	-0.7
1,495,683	+		IAI47_07085	0.50	-4.2
1,495,684	-		IAI47_07085	0.50	-1.7
1,495,737	-		IAI47_07085	0.55	-1.9
1,495,774	+		IAI47_07085	0.58	-3.4
1,495,774	+		IAI47_07085	0.58	-1.4
1,495,850	+		IAI47_07085	0.65	-3.5
1,495,850	+		IAI47_07085	0.65	-2.7
1,495,855	+		IAI47_07085	0.66	-0.1
1,495,855	+		IAI47_07085	0.66	-3.5
1,495,855	+		IAI47_07085	0.66	-2.4
1,495,855	+		IAI47_07085	0.66	-3.4
1,495,856	-		IAI47_07085	0.66	-2.8
1,495,888	+		IAI47_07085	0.69	-0.7
1,495,888	+		IAI47_07085	0.69	-2.6
1,495,888	+		IAI47_07085	0.69	-2.7
1,495,888	+		IAI47_07085	0.69	-3.1
1,495,888	+		IAI47_07085	0.69	-2.9
1,495,888	+		IAI47_07085	0.69	-3.6
1,495,888	+		IAI47_07085	0.69	-1.7
1,495,889	-		IAI47_07085	0.69	-0.1
1,495,889	-		IAI47_07085	0.69	-1.1
1,495,889	-		IAI47_07085	0.69	-4.7
1,495,889	-		IAI47_07085	0.69	-3.3
1,495,897	+		IAI47_07085	0.70	-2.1
1,495,897	+		IAI47_07085	0.70	-4.3
1,495,898	-		IAI47_07085	0.70	-1.7
1,495,898	-		IAI47_07085	0.70	-3.8
1,496,017	+		IAI47_07085	0.81	-3.9
1,496,063	-		IAI47_07085	0.85	-3.0
1,496,123	+				-3.4
1,496,123	+				-3.6
1,496,165	+				-2.8
1,496,165	+				-3.6
1,496,165	+				-2.3
1,496,165	+				-2.6
1,496,165	+				-2.9
1,496,165	+				-1.9
1,496,165	+				-2.3
1,496,165	-				+0.9
1,496,166	-				-3.2
1,496,166	-				-4.7
1,496,166	-				-1.7
1,496,166	-				-1.4
1,496,166	-				+0.9
1,496,166	-				-1.1
1,496,166	-				-3.9
1,496,166	-				-3.0
1,496,167	+				+0.9
1,496,167	+				-4.1
1,496,167	+				-1.4
1,496,167	+				-1.4
1,496,167	+				-1.1
1,496,167	+				-1.7
1,496,167	+				-2.1
1,496,167	+				-1.1
1,496,167	+				-2.7
1,496,167	+				-1.9
1,496,167	+				-2.4
1,496,167	+				-1.4
1,496,167	+				-2.7
1,496,167	+				-1.4
1,496,167	+				-2.6
1,496,168	-				-1.1
1,496,168	-				-1.7
1,496,168	-				-0.7
1,496,168	-				-3.6
1,496,168	-				-3.6
1,496,168	-				-4.6
1,496,168	-				-3.1
1,496,168	-				-3.1
1,496,168	-				-3.7
1,496,168	-				-2.3
1,496,168	-				-1.1
1,496,168	-				-3.2
1,496,168	-				-2.7
1,496,184	+				-2.6
1,496,184	+				+0.9
1,496,185	-				-1.1
1,496,210	+				-1.1
1,496,210	+				-2.8
1,496,211	-				-2.3
1,496,234	+				-1.4
1,496,235	-				-0.6
1,496,401	+		IAI47_07090	0.14	-2.3
1,496,401	+		IAI47_07090	0.14	-3.2
1,496,401	+		IAI47_07090	0.14	-3.5
1,496,402	-		IAI47_07090	0.14	-5.0
1,496,403	+		IAI47_07090	0.14	-3.2
1,496,403	+		IAI47_07090	0.14	-0.1
1,496,403	+		IAI47_07090	0.14	-2.8
1,496,409	+		IAI47_07090	0.15	-2.4
1,496,409	+		IAI47_07090	0.15	-1.4
1,496,409	+		IAI47_07090	0.15	-1.4
1,496,409	+		IAI47_07090	0.15	-1.4
1,496,409	+		IAI47_07090	0.15	-2.4
1,496,409	+		IAI47_07090	0.15	-2.1
1,496,409	+		IAI47_07090	0.15	-3.4
1,496,410	-		IAI47_07090	0.15	-1.7
1,496,410	-		IAI47_07090	0.15	-3.1
1,496,410	-		IAI47_07090	0.15	-3.1
1,496,410	-		IAI47_07090	0.15	-3.7
1,496,410	-		IAI47_07090	0.15	-0.7
1,496,410	-		IAI47_07090	0.15	-3.5
1,496,410	-		IAI47_07090	0.15	-2.1
1,496,442	+		IAI47_07090	0.17	-1.9
1,496,442	+		IAI47_07090	0.17	-2.6
1,496,480	+		IAI47_07090	0.20	-2.4
1,496,699	-		IAI47_07090	0.37	-2.6
1,496,830	+		IAI47_07090	0.47	-3.9
1,496,991	-		IAI47_07090	0.59	-2.9
1,496,991	-		IAI47_07090	0.59	-2.8
1,496,991	-		IAI47_07090	0.59	-3.7
1,497,012	+		IAI47_07090	0.61	-1.7
1,497,012	+		IAI47_07090	0.61	-5.2
1,497,053	+		IAI47_07090	0.64	-2.9
1,497,054	-		IAI47_07090	0.64	-3.0
1,497,054	-		IAI47_07090	0.64	-2.7
1,497,133	+		IAI47_07090	0.70	-2.8
1,497,133	+		IAI47_07090	0.70	-3.2
1,497,133	+		IAI47_07090	0.70	-2.4
1,497,133	+		IAI47_07090	0.70	-3.3
1,497,133	+		IAI47_07090	0.70	-1.9
1,497,134	-		IAI47_07090	0.70	-2.3
1,497,135	+		IAI47_07090	0.70	-2.9
1,497,135	+		IAI47_07090	0.70	-3.8
1,497,135	+		IAI47_07090	0.70	-3.7
1,497,135	+		IAI47_07090	0.70	-2.8
1,497,136	-		IAI47_07090	0.70	-2.8
1,497,136	-		IAI47_07090	0.70	-3.3
1,497,136	-		IAI47_07090	0.70	-2.6