Strain Fitness in Pantoea sp. MT58 around IAI47_05770

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
1,197,918	+				-0.5
1,197,938	+				-1.5
1,197,938	+				-0.4
1,197,939	-				+0.0
1,197,946	-				+0.1
1,197,946	-				-0.2
1,197,946	-				+0.6
1,197,975	+				-0.4
1,197,975	+				-1.2
1,197,975	+				-0.6
1,197,976	-				+0.3
1,197,976	-				+0.8
1,197,976	-				-1.3
1,198,019	+				+0.8
1,198,020	-				-1.9
1,198,055	+				-0.1
1,198,055	+				-0.7
1,198,055	+				-0.2
1,198,055	+				-0.0
1,198,056	-				-0.6
1,198,056	-				-0.2
1,198,056	-				+0.0
1,198,056	-				-0.5
1,198,056	-				+1.4
1,198,056	-				-1.3
1,198,056	-				+0.4
1,198,056	-				-2.3
1,198,059	+				-0.2
1,198,059	+				-0.2
1,198,059	+				-1.0
1,198,060	-				-0.5
1,198,060	-				+2.5
1,198,060	-				+0.3
1,198,060	-				-0.4
1,198,068	+				+2.2
1,198,069	-				-0.8
1,198,090	+				+0.3
1,198,090	+				+0.6
1,198,091	-				-0.4
1,198,091	-				+0.1
1,198,091	-				+0.1
1,198,091	-				+0.4
1,198,145	+				-0.6
1,198,145	+				-0.2
1,198,146	-				+0.3
1,198,146	-				-0.7
1,198,146	-				+0.6
1,198,146	-				-1.1
1,198,146	-				-0.4
1,198,161	+				+0.7
1,198,241	+				-0.2
1,198,242	-				+2.8
1,198,289	-				-1.0
1,198,289	-				-0.4
1,198,342	+				+0.8
1,198,342	+				-1.3
1,198,342	+				-1.2
1,198,408	+				+1.6
1,198,408	+				-0.7
1,198,409	-				+0.8
1,198,409	-				-0.8
1,198,409	-				-0.6
1,198,409	-				-0.0
1,198,409	-				+0.9
1,198,409	-				+0.1
1,198,409	-				+0.3
1,198,409	-				-0.3
1,198,409	-				+1.2
1,198,409	-				-1.6
1,198,427	+				+0.3
1,198,427	+				-0.4
1,198,427	+				+1.4
1,198,428	-				-0.7
1,198,428	-				+0.8
1,198,428	-				-0.4
1,198,428	-				+1.6
1,198,430	+				-0.6
1,198,430	+				-0.2
1,198,431	-				+0.8
1,198,431	-				+0.5
1,198,441	+				+0.2
1,198,441	+				-0.6
1,198,441	+				+0.8
1,198,441	+				+0.3
1,198,442	-				-0.3
1,198,442	-				-1.0
1,198,448	+				-0.5
1,198,449	-				+2.6
1,198,449	-				+1.6
1,198,449	-				+2.2
1,198,471	+				+0.7
1,198,471	+				-0.2
1,198,471	+				-0.4
1,198,471	+				-2.3
1,198,471	+				-1.2
1,198,472	-				-0.1
1,198,472	-				-0.2
1,198,472	-				-0.4
1,198,472	-				+1.1
1,198,508	-				-0.7
1,198,516	+				-0.1
1,198,516	+				-0.7
1,198,517	-				+0.8
1,198,517	-				+1.1
1,198,533	+				-0.7
1,198,555	+				+0.3
1,198,555	+				+0.8
1,198,556	-				-0.5
1,198,556	-				-0.0
1,198,556	-				+2.4
1,198,556	-				+0.1
1,198,556	-				-0.7
1,198,556	-				-0.5
1,198,556	-				+0.6
1,198,638	+				+0.8
1,198,639	-				+0.4
1,198,646	-				+0.8
1,198,652	+				+0.7
1,198,652	+				-0.7
1,198,653	-				+0.2
1,198,659	+				+0.8
1,198,659	+				+0.5
1,198,659	+				+2.7
1,198,659	+				+1.1
1,198,659	+				+0.1
1,198,659	+				-0.5
1,198,659	+				+1.2
1,198,660	-				-0.7
1,198,660	-				+0.4
1,198,660	-				-0.7
1,198,672	+				+1.4
1,198,672	+				+0.7
1,198,673	-				-0.6
1,198,673	-				-0.0
1,198,673	-				+0.7
1,198,754	+				+0.2
1,198,754	+				-0.3
1,198,754	+				-1.2
1,198,754	+				-1.0
1,198,754	+				+0.4
1,198,754	+				+0.8
1,198,755	-				-0.5
1,198,760	+				+2.7
1,198,760	+				+0.8
1,198,760	+				-0.2
1,198,760	+				-0.4
1,198,760	+				+0.2
1,198,760	+				-3.4
1,198,760	+				+0.4
1,198,760	+				-0.7
1,198,761	-				+1.8
1,198,761	-				+0.3
1,198,761	-				-1.1
1,198,800	+				-0.3
1,198,801	-				+1.4
1,198,801	-				+0.3
1,198,801	-				-1.3
1,198,843	+				+0.4
1,198,844	-				-0.2
1,198,844	-				-0.7
1,198,844	-				-0.2
1,198,844	-				-0.1
1,198,847	-				-0.9
1,198,847	-				+1.3
1,198,880	-				+0.3
1,198,895	+				-2.0
1,198,895	+				+0.8
1,198,895	+				+0.3
1,198,895	+				+0.6
1,198,896	-				+0.2
1,198,896	-				+0.1
1,198,896	-				+1.7
1,198,896	-				+0.7
1,198,909	-				+0.3
1,198,909	-				-1.2
1,198,929	+				-2.4
1,198,929	+				-0.7
1,198,930	-				-0.1
1,198,930	-				+0.4
1,198,937	+				+1.4
1,198,937	+				-0.7
1,198,938	-				+0.4
1,198,960	+		IAI47_05770	0.13	-0.2
1,198,960	+		IAI47_05770	0.13	+1.2
1,198,961	-		IAI47_05770	0.13	+0.8
1,198,961	-		IAI47_05770	0.13	-1.2
1,198,961	-		IAI47_05770	0.13	-1.2
1,198,961	-		IAI47_05770	0.13	+0.1
1,198,961	-		IAI47_05770	0.13	-0.6
1,198,961	-		IAI47_05770	0.13	-0.2
1,198,961	-		IAI47_05770	0.13	+0.5
1,198,961	-		IAI47_05770	0.13	+0.1
1,198,961	-		IAI47_05770	0.13	+1.4
1,199,114	-		IAI47_05770	0.44	-2.5
1,199,357	-				-0.2
1,199,357	-				-0.7
1,199,432	-				+1.7
1,199,460	+		IAI47_05775	0.12	-1.5
1,199,461	-		IAI47_05775	0.12	-1.3
1,199,465	+		IAI47_05775	0.13	-0.6
1,199,466	-		IAI47_05775	0.13	+1.9
1,199,495	-		IAI47_05775	0.18	-0.2
1,199,495	-		IAI47_05775	0.18	-0.2
1,199,501	+		IAI47_05775	0.19	-0.5
1,199,502	-		IAI47_05775	0.19	-0.7
1,199,520	-		IAI47_05775	0.22	-0.4
1,199,520	-		IAI47_05775	0.22	+0.5
1,199,543	+		IAI47_05775	0.26	-1.2
1,199,544	-		IAI47_05775	0.26	-0.4
1,199,626	-		IAI47_05775	0.40	+0.6
1,199,626	-		IAI47_05775	0.40	+0.8
1,199,626	-		IAI47_05775	0.40	-0.2
1,199,626	-		IAI47_05775	0.40	+0.5
1,199,626	-		IAI47_05775	0.40	-0.0
1,199,668	+		IAI47_05775	0.47	+0.2
1,199,669	-		IAI47_05775	0.47	-0.1
1,199,669	-		IAI47_05775	0.47	+0.4
1,199,685	-		IAI47_05775	0.50	-1.7
1,199,706	-		IAI47_05775	0.53	-3.5
1,199,725	-		IAI47_05775	0.57	-0.1
1,199,725	-		IAI47_05775	0.57	+0.1
1,199,725	-		IAI47_05775	0.57	+0.3
1,199,773	-		IAI47_05775	0.65	+0.6
1,199,773	-		IAI47_05775	0.65	+0.8
1,199,777	+		IAI47_05775	0.65	+0.4
1,199,778	-		IAI47_05775	0.65	-2.0
1,199,778	-		IAI47_05775	0.65	+1.1
1,199,778	-		IAI47_05775	0.65	+0.8
1,199,778	-		IAI47_05775	0.65	+2.1
1,199,778	-		IAI47_05775	0.65	+0.0
1,199,778	-		IAI47_05775	0.65	+1.8
1,199,778	-		IAI47_05775	0.65	+0.3
1,199,793	-		IAI47_05775	0.68	+1.4
1,199,994	-				-1.1
1,199,994	-				-1.6
1,199,994	-				-1.2
1,199,994	-				-1.5
1,199,994	-				+2.4
1,199,994	-				-3.7
1,199,998	-				-3.4
1,199,998	-				-0.0
1,199,998	-				-0.5
1,200,005	-				+0.2
1,200,009	-				+0.4
1,200,029	-				+0.8
1,200,029	-				+0.2
1,200,029	-				-1.2
1,200,033	-				+0.3
1,200,033	-				+1.3
1,200,033	-				-1.3
1,200,033	-				+0.7
1,200,033	-				+0.6
1,200,033	-				+0.5
1,200,033	-				-1.0
1,200,033	-				-0.4
1,200,033	-				-0.3
1,200,033	-				+1.3
1,200,062	-		IAI47_05780	0.16	-0.1
1,200,062	-		IAI47_05780	0.16	+1.8
1,200,066	+		IAI47_05780	0.17	+1.4
1,200,067	-		IAI47_05780	0.17	-0.7
1,200,067	-		IAI47_05780	0.17	-0.7
1,200,067	-		IAI47_05780	0.17	-0.4
1,200,067	-		IAI47_05780	0.17	+0.0
1,200,067	-		IAI47_05780	0.17	+0.8
1,200,067	-		IAI47_05780	0.17	+0.3
1,200,119	-		IAI47_05780	0.30	-0.5
1,200,119	-		IAI47_05780	0.30	+0.3
1,200,119	-		IAI47_05780	0.30	+0.1
1,200,119	-		IAI47_05780	0.30	+0.1
1,200,119	-		IAI47_05780	0.30	-1.9
1,200,123	-		IAI47_05780	0.31	-0.2
1,200,123	-		IAI47_05780	0.31	+0.2
1,200,123	-		IAI47_05780	0.31	-0.5
1,200,123	-		IAI47_05780	0.31	-0.4
1,200,126	+		IAI47_05780	0.32	+0.4
1,200,127	-		IAI47_05780	0.32	-0.3
1,200,127	-		IAI47_05780	0.32	+0.1
1,200,127	-		IAI47_05780	0.32	-0.5
1,200,127	-		IAI47_05780	0.32	-0.2
1,200,153	-		IAI47_05780	0.39	+0.8
1,200,185	-		IAI47_05780	0.47	+0.5
1,200,185	-		IAI47_05780	0.47	-0.6
1,200,199	+		IAI47_05780	0.50	+1.1
1,200,200	-		IAI47_05780	0.50	-0.6
1,200,221	-		IAI47_05780	0.56	-0.1
1,200,265	+		IAI47_05780	0.67	-0.2
1,200,266	-		IAI47_05780	0.67	+0.8
1,200,266	-		IAI47_05780	0.67	+2.4
1,200,266	-		IAI47_05780	0.67	+0.8
1,200,266	-		IAI47_05780	0.67	+0.4
1,200,274	+		IAI47_05780	0.69	-0.7
1,200,274	+		IAI47_05780	0.69	-0.5
1,200,275	-		IAI47_05780	0.69	+0.9
1,200,275	-		IAI47_05780	0.69	-0.7
1,200,275	-		IAI47_05780	0.69	+4.6
1,200,293	-		IAI47_05780	0.74	-0.9
1,200,299	-		IAI47_05780	0.75	-0.7
1,200,299	-		IAI47_05780	0.75	+0.8
1,200,299	-		IAI47_05780	0.75	-0.2
1,200,308	-		IAI47_05780	0.77	+0.4
1,200,381	+				+0.4
1,200,390	-				+0.1
1,200,390	-				-0.6