Strain Fitness in Pantoea sp. MT58 around IAI47_18690

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
3,984,744	+		IAI47_18685	0.13	+0.3
3,984,744	+		IAI47_18685	0.13	-0.2
3,984,744	+		IAI47_18685	0.13	-0.4
3,984,744	+		IAI47_18685	0.13	+0.2
3,984,744	+		IAI47_18685	0.13	-0.2
3,984,744	+		IAI47_18685	0.13	+1.9
3,984,745	-		IAI47_18685	0.13	+0.9
3,984,747	+		IAI47_18685	0.14	+2.6
3,984,747	+		IAI47_18685	0.14	+0.7
3,984,747	+		IAI47_18685	0.14	-0.4
3,984,747	+		IAI47_18685	0.14	-1.2
3,984,748	-		IAI47_18685	0.14	-0.4
3,984,748	-		IAI47_18685	0.14	+0.5
3,984,748	-		IAI47_18685	0.14	+0.9
3,984,748	-		IAI47_18685	0.14	-0.4
3,984,748	-		IAI47_18685	0.14	+0.9
3,984,748	-		IAI47_18685	0.14	+0.5
3,984,748	-		IAI47_18685	0.14	+0.2
3,984,748	-		IAI47_18685	0.14	-1.1
3,984,816	+		IAI47_18685	0.37	+2.8
3,984,816	+		IAI47_18685	0.37	-1.0
3,984,816	+		IAI47_18685	0.37	-0.5
3,984,816	+		IAI47_18685	0.37	+0.2
3,984,816	+		IAI47_18685	0.37	+1.1
3,984,817	-		IAI47_18685	0.38	+0.7
3,984,914	+		IAI47_18685	0.70	-0.4
3,984,914	+		IAI47_18685	0.70	-0.5
3,984,914	+		IAI47_18685	0.70	+0.2
3,984,914	+		IAI47_18685	0.70	+0.3
3,984,914	+		IAI47_18685	0.70	-0.1
3,984,914	+		IAI47_18685	0.70	-0.2
3,984,915	-		IAI47_18685	0.71	-0.8
3,984,915	-		IAI47_18685	0.71	+0.1
3,984,918	+		IAI47_18685	0.72	+0.5
3,984,918	+		IAI47_18685	0.72	+0.4
3,984,919	-		IAI47_18685	0.72	-0.4
3,984,919	-		IAI47_18685	0.72	-0.2
3,984,919	-		IAI47_18685	0.72	+2.7
3,984,919	-		IAI47_18685	0.72	-0.1
3,984,993	+				-0.7
3,984,993	+				-0.9
3,984,994	-				+2.2
3,984,994	-				-0.5
3,984,994	-				-0.6
3,985,001	+				+1.3
3,985,002	-				+0.1
3,985,002	-				+0.2
3,985,013	+				-0.4
3,985,024	+				-0.2
3,985,025	-				-0.4
3,985,025	-				+0.0
3,985,025	-				+0.9
3,985,041	+				-0.3
3,985,041	+				+0.3
3,985,049	+				-0.6
3,985,049	+				-1.2
3,985,049	+				-1.0
3,985,049	+				-0.4
3,985,161	+				-0.7
3,985,162	-				-0.1
3,985,163	+				-1.1
3,985,163	+				-0.1
3,985,163	+				-0.2
3,985,163	+				+1.2
3,985,164	-				+0.3
3,985,164	-				+0.2
3,985,164	-				+0.5
3,985,164	-				+0.4
3,985,164	-				+0.4
3,985,200	+				-0.9
3,985,200	+				-0.1
3,985,200	+				-0.7
3,985,200	+				-0.4
3,985,201	-				-0.8
3,985,201	-				-1.4
3,985,201	-				+0.3
3,985,201	-				-0.1
3,985,204	+				+0.8
3,985,204	+				-2.2
3,985,204	+				-0.8
3,985,204	+				-0.8
3,985,205	-				-0.2
3,985,205	-				-0.9
3,985,205	-				+0.9
3,985,205	-				+0.9
3,985,205	-				-1.2
3,985,222	+				-0.5
3,985,222	+				+0.1
3,985,222	+				-0.4
3,985,222	+				-0.1
3,985,222	+				+0.4
3,985,222	+				+0.3
3,985,223	-				+2.0
3,985,223	-				-1.1
3,985,223	-				-0.3
3,985,223	-				-0.7
3,985,240	+				+0.8
3,985,241	-				+0.9
3,985,256	+				+0.1
3,985,257	-				-1.1
3,985,257	-				-0.6
3,985,257	-				+1.1
3,985,287	-				+1.1
3,985,291	+				+1.0
3,985,350	+				-1.4
3,985,350	+				-0.1
3,985,351	-				+0.1
3,985,351	-				+1.9
3,985,351	-				-0.3
3,985,351	-				-2.1
3,985,351	-				+0.9
3,985,354	+				+0.5
3,985,354	+				-1.1
3,985,354	+				-0.7
3,985,354	+				-0.2
3,985,354	+				-0.1
3,985,354	+				+0.1
3,985,354	+				-2.2
3,985,355	-				-0.4
3,985,355	-				+1.9
3,985,355	-				-0.9
3,985,355	-				-1.5
3,985,355	-				+0.2
3,985,355	-				+0.3
3,985,355	-				+0.3
3,985,407	+				+0.3
3,985,407	+				+1.5
3,985,407	+				-0.4
3,985,407	+				+0.3
3,985,407	+				+0.2
3,985,407	+				-0.5
3,985,408	-				+0.7
3,985,408	-				-1.2
3,985,408	-				+0.6
3,985,408	-				-0.1
3,985,408	-				-0.1
3,985,408	-				+0.2
3,985,421	+				+1.2
3,985,437	+				+1.3
3,985,437	+				+1.5
3,985,450	+				+0.9
3,985,451	-				+0.9
3,985,465	+				+0.6
3,985,465	+				-0.2
3,985,465	+				-0.1
3,985,466	-				+0.0
3,985,466	-				-0.1
3,985,466	-				+0.6
3,985,466	-				-1.7
3,985,466	-				+0.9
3,985,466	-				-0.4
3,985,468	-				-0.7
3,985,468	-				+0.2
3,985,484	-				+0.1
3,985,484	-				+0.5
3,985,553	+				-0.9
3,985,554	-				+0.5
3,985,554	-				+1.5
3,985,554	-				-0.9
3,985,559	-				-0.9
3,985,575	+				+0.9
3,985,647	-				-0.1
3,985,766	-				+1.0
3,985,781	+				+0.7
3,985,841	+				-0.7
3,985,841	+				-0.8
3,985,842	-				+1.2
3,985,842	-				-0.9
3,985,871	+				+1.8
3,985,871	+				-1.0
3,985,872	-				-0.4
3,985,872	-				-0.5
3,985,872	-				+0.9
3,985,872	-				+1.5
3,985,901	+		IAI47_18690	0.10	+0.3
3,985,902	-		IAI47_18690	0.10	+0.9
3,985,902	-		IAI47_18690	0.10	-1.4
3,985,983	-		IAI47_18690	0.15	-0.1
3,986,070	+		IAI47_18690	0.21	-0.1
3,986,126	+		IAI47_18690	0.24	+0.9
3,986,161	+		IAI47_18690	0.26	+0.9
3,986,162	-		IAI47_18690	0.27	-1.4
3,986,162	-		IAI47_18690	0.27	+0.3
3,986,219	-		IAI47_18690	0.30	-0.8
3,986,295	-		IAI47_18690	0.35	+0.5
3,986,295	-		IAI47_18690	0.35	-2.0
3,986,295	-		IAI47_18690	0.35	-0.1
3,986,457	+		IAI47_18690	0.45	-0.4
3,986,508	+		IAI47_18690	0.48	-0.3
3,986,572	+		IAI47_18690	0.52	+1.5
3,986,573	-		IAI47_18690	0.52	+2.0
3,986,647	+		IAI47_18690	0.57	-0.4
3,986,647	+		IAI47_18690	0.57	-1.2
3,986,647	+		IAI47_18690	0.57	+1.0
3,986,647	+		IAI47_18690	0.57	-0.2
3,986,647	+		IAI47_18690	0.57	-1.5
3,986,648	-		IAI47_18690	0.57	+0.0
3,986,648	-		IAI47_18690	0.57	+0.4
3,986,648	-		IAI47_18690	0.57	+0.0
3,986,648	-		IAI47_18690	0.57	-2.7
3,986,687	+		IAI47_18690	0.59	+0.5
3,986,687	+		IAI47_18690	0.59	-1.1
3,986,698	-		IAI47_18690	0.60	-0.1
3,986,698	-		IAI47_18690	0.60	-0.2
3,986,698	-		IAI47_18690	0.60	-0.6
3,986,698	-		IAI47_18690	0.60	+0.2
3,986,704	+		IAI47_18690	0.60	-0.1
3,986,704	+		IAI47_18690	0.60	+0.9
3,986,704	+		IAI47_18690	0.60	-0.5
3,986,704	+		IAI47_18690	0.60	+0.5
3,986,704	+		IAI47_18690	0.60	+0.9
3,986,704	+		IAI47_18690	0.60	-0.9
3,986,704	+		IAI47_18690	0.60	+0.2
3,986,704	+		IAI47_18690	0.60	+0.3
3,986,704	+		IAI47_18690	0.60	+0.7
3,986,704	+		IAI47_18690	0.60	-0.1
3,986,704	+		IAI47_18690	0.60	-0.6
3,986,705	-		IAI47_18690	0.60	+1.9
3,986,705	-		IAI47_18690	0.60	+0.9
3,986,705	-		IAI47_18690	0.60	+0.0
3,986,705	-		IAI47_18690	0.60	+0.7
3,986,705	-		IAI47_18690	0.60	+0.0
3,986,705	-		IAI47_18690	0.60	-1.1
3,986,705	-		IAI47_18690	0.60	+1.2
3,986,705	-		IAI47_18690	0.60	-0.0
3,986,705	-		IAI47_18690	0.60	-0.3
3,986,705	-		IAI47_18690	0.60	+2.3
3,986,706	+		IAI47_18690	0.61	-0.4
3,986,706	+		IAI47_18690	0.61	+0.9
3,986,707	-		IAI47_18690	0.61	+1.9
3,986,788	+		IAI47_18690	0.66	-0.7
3,986,788	+		IAI47_18690	0.66	+0.3
3,986,788	+		IAI47_18690	0.66	-0.1
3,986,788	+		IAI47_18690	0.66	+1.9
3,986,788	+		IAI47_18690	0.66	-2.7
3,986,788	+		IAI47_18690	0.66	-0.3
3,986,788	+		IAI47_18690	0.66	-1.7
3,986,789	-		IAI47_18690	0.66	+0.9
3,986,789	-		IAI47_18690	0.66	+0.9
3,986,789	-		IAI47_18690	0.66	-0.2
3,986,789	-		IAI47_18690	0.66	-1.4
3,986,789	-		IAI47_18690	0.66	-1.9
3,986,789	-		IAI47_18690	0.66	-1.5
3,986,789	-		IAI47_18690	0.66	-0.2
3,986,789	-		IAI47_18690	0.66	-0.0
3,986,789	-		IAI47_18690	0.66	+0.3
3,986,814	+		IAI47_18690	0.67	+0.5
3,986,814	+		IAI47_18690	0.67	-1.2
3,986,815	-		IAI47_18690	0.67	-0.2
3,986,838	+		IAI47_18690	0.69	+1.9
3,986,838	+		IAI47_18690	0.69	+2.0
3,986,839	-		IAI47_18690	0.69	-0.6
3,986,839	-		IAI47_18690	0.69	+0.1
3,986,839	-		IAI47_18690	0.69	-0.9
3,986,842	+		IAI47_18690	0.69	+0.8
3,986,842	+		IAI47_18690	0.69	-0.4
3,986,842	+		IAI47_18690	0.69	+1.7
3,986,842	+		IAI47_18690	0.69	-1.0
3,986,842	+		IAI47_18690	0.69	+1.4
3,986,842	+		IAI47_18690	0.69	+0.6
3,986,842	+		IAI47_18690	0.69	-0.6
3,986,842	+		IAI47_18690	0.69	+0.7
3,986,842	+		IAI47_18690	0.69	+0.1
3,986,842	+		IAI47_18690	0.69	+0.8
3,986,843	-		IAI47_18690	0.69	-0.2
3,986,843	-		IAI47_18690	0.69	-0.4
3,986,843	-		IAI47_18690	0.69	-0.9
3,986,934	+		IAI47_18690	0.75	-0.5
3,986,934	+		IAI47_18690	0.75	+0.3
3,986,934	+		IAI47_18690	0.75	+0.8
3,986,934	+		IAI47_18690	0.75	-0.5
3,986,934	+		IAI47_18690	0.75	+0.4
3,986,935	-		IAI47_18690	0.75	+0.9
3,986,935	-		IAI47_18690	0.75	+0.3
3,986,935	-		IAI47_18690	0.75	-0.9
3,987,078	+		IAI47_18690	0.84	-0.4
3,987,078	+		IAI47_18690	0.84	+1.9
3,987,078	+		IAI47_18690	0.84	-2.2
3,987,078	+		IAI47_18690	0.84	+0.9
3,987,079	-		IAI47_18690	0.84	+0.2
3,987,079	-		IAI47_18690	0.84	-1.4
3,987,079	-		IAI47_18690	0.84	-0.5
3,987,134	+		IAI47_18690	0.87	+0.7
3,987,135	-		IAI47_18690	0.87	-2.8
3,987,177	+				-1.2
3,987,177	+				-3.5
3,987,178	-				+1.9
3,987,178	-				+1.9
3,987,178	-				+0.1
3,987,216	-				-0.4
3,987,239	-				+0.2
3,987,239	-				-0.6
3,987,239	-				+0.5
3,987,263	+				-0.7
3,987,264	-				+0.4
3,987,286	+				-0.1
3,987,286	+				+0.2
3,987,286	+				-0.7
3,987,286	+				-0.0
3,987,286	+				+0.5
3,987,286	+				+1.6
3,987,286	+				+0.9
3,987,286	+				-1.1
3,987,287	-				-0.1
3,987,287	-				-1.9
3,987,287	-				-0.5
3,987,287	-				+1.3
3,987,287	-				-0.2
3,987,287	-				+0.6
3,987,287	-				+0.5
3,987,287	-				-0.1
3,987,287	-				+1.3
3,987,288	+				+0.5
3,987,288	+				+0.6
3,987,288	+				-1.1
3,987,334	+				+0.2
3,987,334	+				-0.1
3,987,402	+				-0.3
3,987,403	-				-0.7
3,987,434	+				-0.0
3,987,435	-				-0.5
3,987,435	-				+0.6
3,987,447	+				+0.3
3,987,447	+				-1.2
3,987,504	+				+0.3
3,987,504	+				+0.3
3,987,504	+				-0.1
3,987,505	-				+0.3
3,987,505	-				-0.3
3,987,505	-				-1.4
3,987,505	-				-0.7
3,987,505	-				-0.3
3,987,511	+				-1.9
3,987,512	-				-0.2
3,987,522	+				+0.4
3,987,523	-				-0.3
3,987,523	-				-0.4
3,987,540	+				-0.7
3,987,540	+				+0.2
3,987,540	+				+0.3
3,987,540	+				-0.3
3,987,540	+				-2.2
3,987,540	+				+1.0
3,987,541	-				-0.7
3,987,541	-				+0.3
3,987,541	-				+1.6
3,987,541	-				-2.1
3,987,541	-				-0.4
3,987,541	-				+0.9
3,987,541	-				-0.2
3,987,543	+				-0.1
3,987,543	+				-0.1
3,987,543	+				-1.4
3,987,544	-				-0.1
3,987,577	+				-0.3
3,987,577	+				+0.3
3,987,577	+				+1.9
3,987,577	+				-0.3
3,987,577	+				+0.7
3,987,578	-				-0.2
3,987,578	-				+0.6
3,987,587	-				+0.7
3,987,587	-				-0.5
3,987,604	+				+1.3
3,987,604	+				-0.1
3,987,604	+				+1.5
3,987,604	+				+0.2
3,987,604	+				+0.1
3,987,605	-				+0.0
3,987,670	+		IAI47_18695	0.15	+0.7
3,987,679	+		IAI47_18695	0.16	-0.3
3,987,679	+		IAI47_18695	0.16	-1.2
3,987,679	+		IAI47_18695	0.16	-0.6
3,987,680	-		IAI47_18695	0.16	+0.6
3,987,680	-		IAI47_18695	0.16	-0.7
3,987,697	+		IAI47_18695	0.19	+0.3
3,987,698	-		IAI47_18695	0.19	+1.6
3,987,727	+		IAI47_18695	0.23	-1.1
3,987,728	-		IAI47_18695	0.23	-0.1
3,987,728	-		IAI47_18695	0.23	-0.6
3,987,776	+		IAI47_18695	0.30	+0.7
3,987,788	+		IAI47_18695	0.31	-0.5
3,987,788	+		IAI47_18695	0.31	+1.5
3,987,788	+		IAI47_18695	0.31	+0.3
3,987,788	+		IAI47_18695	0.31	-0.3
3,987,788	+		IAI47_18695	0.31	-0.1
3,987,789	-		IAI47_18695	0.32	+3.3
3,987,789	-		IAI47_18695	0.32	+0.7
3,987,789	-		IAI47_18695	0.32	-0.7
3,987,789	-		IAI47_18695	0.32	-0.1
3,987,878	+		IAI47_18695	0.44	-0.2
3,987,878	+		IAI47_18695	0.44	+0.1
3,987,879	-		IAI47_18695	0.44	-0.4
3,987,932	-		IAI47_18695	0.51	+0.2
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3,987,985	-		IAI47_18695	0.59	-0.1
3,987,985	-		IAI47_18695	0.59	+0.2
3,988,014	-		IAI47_18695	0.63	-1.4
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3,988,026	-		IAI47_18695	0.65	+1.9
3,988,026	-		IAI47_18695	0.65	+0.9
3,988,026	-		IAI47_18695	0.65	+0.1
3,988,026	-		IAI47_18695	0.65	-1.3
3,988,027	+		IAI47_18695	0.65	-0.4
3,988,028	-		IAI47_18695	0.65	+0.8
3,988,028	-		IAI47_18695	0.65	+2.1
3,988,028	-		IAI47_18695	0.65	-0.7
3,988,028	-		IAI47_18695	0.65	-0.3
3,988,028	-		IAI47_18695	0.65	-0.3
3,988,075	+		IAI47_18695	0.71	-1.1
3,988,196	+		IAI47_18695	0.88	-0.7
3,988,196	+		IAI47_18695	0.88	-1.3
3,988,196	+		IAI47_18695	0.88	-0.3
3,988,196	+		IAI47_18695	0.88	-0.8
3,988,196	+		IAI47_18695	0.88	+0.4
3,988,197	-		IAI47_18695	0.88	+0.2
3,988,197	-		IAI47_18695	0.88	+0.3
3,988,197	-		IAI47_18695	0.88	+0.5
3,988,197	-		IAI47_18695	0.88	+0.2
3,988,206	+		IAI47_18695	0.90	+0.6
3,988,207	-		IAI47_18695	0.90	+1.9
3,988,281	+				-0.3
3,988,288	+				+0.5
3,988,288	+				-0.2
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3,988,289	-				-1.0
3,988,289	-				-1.7
3,988,289	-				+0.3
3,988,289	-				-0.1
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3,988,331	-				-1.0
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