Strain Fitness in Pantoea sp. MT58 around IAI47_18685

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
3,983,723	-		IAI47_18675	0.39	+1.7
3,983,775	-		IAI47_18675	0.50	+1.6
3,983,822	-		IAI47_18675	0.60	+1.1
3,983,822	-		IAI47_18675	0.60	-1.7
3,983,822	-		IAI47_18675	0.60	-1.7
3,983,822	-		IAI47_18675	0.60	-1.1
3,983,860	-		IAI47_18675	0.68	-0.4
3,983,860	-		IAI47_18675	0.68	-1.9
3,983,860	-		IAI47_18675	0.68	-0.5
3,983,860	-		IAI47_18675	0.68	+0.3
3,983,860	-		IAI47_18675	0.68	-0.4
3,983,869	-		IAI47_18675	0.70	-1.2
3,983,869	-		IAI47_18675	0.70	-1.0
3,983,869	-		IAI47_18675	0.70	-1.7
3,983,869	-		IAI47_18675	0.70	+0.9
3,983,869	-		IAI47_18675	0.70	-1.2
3,983,873	-		IAI47_18675	0.71	-2.1
3,983,873	-		IAI47_18675	0.71	-0.7
3,983,873	-		IAI47_18675	0.71	+1.3
3,983,873	-		IAI47_18675	0.71	+0.7
3,983,873	-		IAI47_18675	0.71	+0.8
3,983,873	-		IAI47_18675	0.71	-0.1
3,983,873	-		IAI47_18675	0.71	-1.0
3,983,873	-		IAI47_18675	0.71	+0.7
3,983,873	-		IAI47_18675	0.71	-1.8
3,983,873	-		IAI47_18675	0.71	+0.2
3,983,902	-		IAI47_18675	0.77	-1.6
3,984,017	+				+0.1
3,984,019	+				-2.9
3,984,063	+				+1.4
3,984,064	-				-0.1
3,984,064	-				-0.7
3,984,145	+		IAI47_18680	0.13	+0.9
3,984,145	+		IAI47_18680	0.13	-0.1
3,984,146	-		IAI47_18680	0.13	-1.7
3,984,146	-		IAI47_18680	0.13	-1.9
3,984,147	+		IAI47_18680	0.13	+0.8
3,984,148	-		IAI47_18680	0.13	-0.7
3,984,160	+		IAI47_18680	0.15	-0.8
3,984,160	+		IAI47_18680	0.15	+0.1
3,984,160	+		IAI47_18680	0.15	-0.4
3,984,160	+		IAI47_18680	0.15	+0.4
3,984,160	+		IAI47_18680	0.15	-0.1
3,984,160	+		IAI47_18680	0.15	+0.8
3,984,160	+		IAI47_18680	0.15	+0.6
3,984,160	+		IAI47_18680	0.15	+0.9
3,984,160	+		IAI47_18680	0.15	+1.5
3,984,160	+		IAI47_18680	0.15	+0.9
3,984,160	+		IAI47_18680	0.15	-0.6
3,984,160	+		IAI47_18680	0.15	-1.7
3,984,160	+		IAI47_18680	0.15	-1.1
3,984,160	+		IAI47_18680	0.15	+0.9
3,984,161	-		IAI47_18680	0.15	-2.1
3,984,161	-		IAI47_18680	0.15	-0.3
3,984,161	-		IAI47_18680	0.15	+0.1
3,984,161	-		IAI47_18680	0.15	+1.9
3,984,161	-		IAI47_18680	0.15	+1.6
3,984,161	-		IAI47_18680	0.15	+1.1
3,984,161	-		IAI47_18680	0.15	+0.3
3,984,161	-		IAI47_18680	0.15	-0.4
3,984,161	-		IAI47_18680	0.15	-0.1
3,984,162	+		IAI47_18680	0.15	+2.1
3,984,162	+		IAI47_18680	0.15	+0.1
3,984,162	+		IAI47_18680	0.15	-0.1
3,984,162	+		IAI47_18680	0.15	-1.7
3,984,162	+		IAI47_18680	0.15	+2.0
3,984,162	+		IAI47_18680	0.15	+0.2
3,984,162	+		IAI47_18680	0.15	-0.2
3,984,162	+		IAI47_18680	0.15	-0.3
3,984,162	+		IAI47_18680	0.15	-1.2
3,984,162	+		IAI47_18680	0.15	-0.5
3,984,162	+		IAI47_18680	0.15	-0.7
3,984,162	+		IAI47_18680	0.15	-1.7
3,984,162	+		IAI47_18680	0.15	+1.3
3,984,163	-		IAI47_18680	0.16	+0.0
3,984,163	-		IAI47_18680	0.16	+0.1
3,984,163	-		IAI47_18680	0.16	+0.3
3,984,163	-		IAI47_18680	0.16	-1.1
3,984,163	-		IAI47_18680	0.16	-0.3
3,984,163	-		IAI47_18680	0.16	+1.5
3,984,163	-		IAI47_18680	0.16	+0.5
3,984,163	-		IAI47_18680	0.16	+1.7
3,984,163	-		IAI47_18680	0.16	+0.5
3,984,163	-		IAI47_18680	0.16	-0.7
3,984,163	-		IAI47_18680	0.16	-0.5
3,984,163	-		IAI47_18680	0.16	-0.5
3,984,163	-		IAI47_18680	0.16	+0.9
3,984,251	+		IAI47_18680	0.30	-0.4
3,984,251	+		IAI47_18680	0.30	+0.7
3,984,251	+		IAI47_18680	0.30	-0.9
3,984,251	+		IAI47_18680	0.30	+0.2
3,984,251	+		IAI47_18680	0.30	+0.8
3,984,251	+		IAI47_18680	0.30	-1.0
3,984,251	+		IAI47_18680	0.30	-1.1
3,984,251	+		IAI47_18680	0.30	-0.3
3,984,251	+		IAI47_18680	0.30	-1.0
3,984,251	+		IAI47_18680	0.30	-0.5
3,984,252	-		IAI47_18680	0.30	-0.3
3,984,252	-		IAI47_18680	0.30	-0.5
3,984,252	-		IAI47_18680	0.30	+0.7
3,984,252	-		IAI47_18680	0.30	+0.7
3,984,252	-		IAI47_18680	0.30	+1.3
3,984,258	+		IAI47_18680	0.31	-0.1
3,984,258	+		IAI47_18680	0.31	-0.1
3,984,258	+		IAI47_18680	0.31	-0.6
3,984,259	-		IAI47_18680	0.32	+0.7
3,984,259	-		IAI47_18680	0.32	+0.3
3,984,259	-		IAI47_18680	0.32	-0.2
3,984,390	+		IAI47_18680	0.54	-0.1
3,984,420	+		IAI47_18680	0.59	-0.3
3,984,420	+		IAI47_18680	0.59	-1.4
3,984,420	+		IAI47_18680	0.59	-0.8
3,984,420	+		IAI47_18680	0.59	+2.5
3,984,420	+		IAI47_18680	0.59	-0.3
3,984,420	+		IAI47_18680	0.59	-1.4
3,984,421	-		IAI47_18680	0.59	-0.3
3,984,421	-		IAI47_18680	0.59	+0.2
3,984,447	+		IAI47_18680	0.63	-0.2
3,984,447	+		IAI47_18680	0.63	-1.1
3,984,448	-		IAI47_18680	0.63	+0.3
3,984,448	-		IAI47_18680	0.63	+0.4
3,984,461	+		IAI47_18680	0.65	+0.4
3,984,461	+		IAI47_18680	0.65	+0.9
3,984,461	+		IAI47_18680	0.65	+0.3
3,984,490	+		IAI47_18680	0.70	+0.9
3,984,490	+		IAI47_18680	0.70	-0.5
3,984,490	+		IAI47_18680	0.70	-0.7
3,984,491	-		IAI47_18680	0.71	-1.2
3,984,491	-		IAI47_18680	0.71	-0.2
3,984,491	-		IAI47_18680	0.71	+0.3
3,984,491	-		IAI47_18680	0.71	-2.9
3,984,510	-		IAI47_18680	0.74	+1.8
3,984,510	-		IAI47_18680	0.74	-0.4
3,984,569	+		IAI47_18680	0.84	-0.2
3,984,569	+		IAI47_18680	0.84	+0.6
3,984,569	+		IAI47_18680	0.84	+1.2
3,984,569	+		IAI47_18680	0.84	-0.9
3,984,569	+		IAI47_18680	0.84	-0.1
3,984,569	+		IAI47_18680	0.84	+0.4
3,984,569	+		IAI47_18680	0.84	-0.9
3,984,569	+		IAI47_18680	0.84	+0.1
3,984,569	+		IAI47_18680	0.84	+0.2
3,984,569	+		IAI47_18680	0.84	+0.8
3,984,570	-		IAI47_18680	0.84	-0.7
3,984,570	-		IAI47_18680	0.84	+0.8
3,984,570	-		IAI47_18680	0.84	-0.9
3,984,570	-		IAI47_18680	0.84	+0.8
3,984,570	-		IAI47_18680	0.84	+1.0
3,984,570	-		IAI47_18680	0.84	+0.7
3,984,570	-		IAI47_18680	0.84	-1.4
3,984,570	-		IAI47_18680	0.84	-0.5
3,984,605	-		IAI47_18680	0.90	+0.1
3,984,605	-		IAI47_18680	0.90	+1.9
3,984,646	+				+0.9
3,984,646	+				+2.7
3,984,646	+				-0.3
3,984,646	+				-1.1
3,984,646	+				+0.3
3,984,646	+				+1.7
3,984,646	+				-1.1
3,984,647	-				+2.3
3,984,647	-				+1.7
3,984,647	-				+0.6
3,984,647	-				+0.2
3,984,653	+				+0.8
3,984,653	+				+0.1
3,984,653	+				-0.4
3,984,653	+				-0.6
3,984,653	+				+0.7
3,984,653	+				+0.9
3,984,653	+				-0.5
3,984,653	+				+1.5
3,984,653	+				+0.9
3,984,654	-				-0.2
3,984,654	-				+1.8
3,984,654	-				-0.1
3,984,665	-				+2.5
3,984,707	-				-0.5
3,984,707	-				-0.5
3,984,730	+				-0.3
3,984,730	+				+0.0
3,984,730	+				+1.6
3,984,730	+				+1.0
3,984,731	-				+0.8
3,984,731	-				-0.2
3,984,731	-				-0.3
3,984,744	+		IAI47_18685	0.13	+0.3
3,984,744	+		IAI47_18685	0.13	-0.2
3,984,744	+		IAI47_18685	0.13	-0.4
3,984,744	+		IAI47_18685	0.13	+0.2
3,984,744	+		IAI47_18685	0.13	-0.2
3,984,744	+		IAI47_18685	0.13	+1.9
3,984,745	-		IAI47_18685	0.13	+0.9
3,984,747	+		IAI47_18685	0.14	+2.6
3,984,747	+		IAI47_18685	0.14	+0.7
3,984,747	+		IAI47_18685	0.14	-0.4
3,984,747	+		IAI47_18685	0.14	-1.2
3,984,748	-		IAI47_18685	0.14	-0.4
3,984,748	-		IAI47_18685	0.14	+0.5
3,984,748	-		IAI47_18685	0.14	+0.9
3,984,748	-		IAI47_18685	0.14	-0.4
3,984,748	-		IAI47_18685	0.14	+0.9
3,984,748	-		IAI47_18685	0.14	+0.5
3,984,748	-		IAI47_18685	0.14	+0.2
3,984,748	-		IAI47_18685	0.14	-1.1
3,984,816	+		IAI47_18685	0.37	+2.8
3,984,816	+		IAI47_18685	0.37	-1.0
3,984,816	+		IAI47_18685	0.37	-0.5
3,984,816	+		IAI47_18685	0.37	+0.2
3,984,816	+		IAI47_18685	0.37	+1.1
3,984,817	-		IAI47_18685	0.38	+0.7
3,984,914	+		IAI47_18685	0.70	-0.4
3,984,914	+		IAI47_18685	0.70	-0.5
3,984,914	+		IAI47_18685	0.70	+0.2
3,984,914	+		IAI47_18685	0.70	+0.3
3,984,914	+		IAI47_18685	0.70	-0.1
3,984,914	+		IAI47_18685	0.70	-0.2
3,984,915	-		IAI47_18685	0.71	-0.8
3,984,915	-		IAI47_18685	0.71	+0.1
3,984,918	+		IAI47_18685	0.72	+0.5
3,984,918	+		IAI47_18685	0.72	+0.4
3,984,919	-		IAI47_18685	0.72	-0.4
3,984,919	-		IAI47_18685	0.72	-0.2
3,984,919	-		IAI47_18685	0.72	+2.7
3,984,919	-		IAI47_18685	0.72	-0.1
3,984,993	+				-0.7
3,984,993	+				-0.9
3,984,994	-				+2.2
3,984,994	-				-0.5
3,984,994	-				-0.6
3,985,001	+				+1.3
3,985,002	-				+0.1
3,985,002	-				+0.2
3,985,013	+				-0.4
3,985,024	+				-0.2
3,985,025	-				-0.4
3,985,025	-				+0.0
3,985,025	-				+0.9
3,985,041	+				-0.3
3,985,041	+				+0.3
3,985,049	+				-0.6
3,985,049	+				-1.2
3,985,049	+				-1.0
3,985,049	+				-0.4
3,985,161	+				-0.7
3,985,162	-				-0.1
3,985,163	+				-1.1
3,985,163	+				-0.1
3,985,163	+				-0.2
3,985,163	+				+1.2
3,985,164	-				+0.3
3,985,164	-				+0.2
3,985,164	-				+0.5
3,985,164	-				+0.4
3,985,164	-				+0.4
3,985,200	+				-0.9
3,985,200	+				-0.1
3,985,200	+				-0.7
3,985,200	+				-0.4
3,985,201	-				-0.8
3,985,201	-				-1.4
3,985,201	-				+0.3
3,985,201	-				-0.1
3,985,204	+				+0.8
3,985,204	+				-2.2
3,985,204	+				-0.8
3,985,204	+				-0.8
3,985,205	-				-0.2
3,985,205	-				-0.9
3,985,205	-				+0.9
3,985,205	-				+0.9
3,985,205	-				-1.2
3,985,222	+				-0.5
3,985,222	+				+0.1
3,985,222	+				-0.4
3,985,222	+				-0.1
3,985,222	+				+0.4
3,985,222	+				+0.3
3,985,223	-				+2.0
3,985,223	-				-1.1
3,985,223	-				-0.3
3,985,223	-				-0.7
3,985,240	+				+0.8
3,985,241	-				+0.9
3,985,256	+				+0.1
3,985,257	-				-1.1
3,985,257	-				-0.6
3,985,257	-				+1.1
3,985,287	-				+1.1
3,985,291	+				+1.0
3,985,350	+				-1.4
3,985,350	+				-0.1
3,985,351	-				+0.1
3,985,351	-				+1.9
3,985,351	-				-0.3
3,985,351	-				-2.1
3,985,351	-				+0.9
3,985,354	+				+0.5
3,985,354	+				-1.1
3,985,354	+				-0.7
3,985,354	+				-0.2
3,985,354	+				-0.1
3,985,354	+				+0.1
3,985,354	+				-2.2
3,985,355	-				-0.4
3,985,355	-				+1.9
3,985,355	-				-0.9
3,985,355	-				-1.5
3,985,355	-				+0.2
3,985,355	-				+0.3
3,985,355	-				+0.3
3,985,407	+				+0.3
3,985,407	+				+1.5
3,985,407	+				-0.4
3,985,407	+				+0.3
3,985,407	+				+0.2
3,985,407	+				-0.5
3,985,408	-				+0.7
3,985,408	-				-1.2
3,985,408	-				+0.6
3,985,408	-				-0.1
3,985,408	-				-0.1
3,985,408	-				+0.2
3,985,421	+				+1.2
3,985,437	+				+1.3
3,985,437	+				+1.5
3,985,450	+				+0.9
3,985,451	-				+0.9
3,985,465	+				+0.6
3,985,465	+				-0.2
3,985,465	+				-0.1
3,985,466	-				+0.0
3,985,466	-				-0.1
3,985,466	-				+0.6
3,985,466	-				-1.7
3,985,466	-				+0.9
3,985,466	-				-0.4
3,985,468	-				-0.7
3,985,468	-				+0.2
3,985,484	-				+0.1
3,985,484	-				+0.5
3,985,553	+				-0.9
3,985,554	-				+0.5
3,985,554	-				+1.5
3,985,554	-				-0.9
3,985,559	-				-0.9
3,985,575	+				+0.9
3,985,647	-				-0.1
3,985,766	-				+1.0
3,985,781	+				+0.7
3,985,841	+				-0.7
3,985,841	+				-0.8
3,985,842	-				+1.2
3,985,842	-				-0.9
3,985,871	+				+1.8
3,985,871	+				-1.0
3,985,872	-				-0.4
3,985,872	-				-0.5
3,985,872	-				+0.9
3,985,872	-				+1.5
3,985,901	+		IAI47_18690	0.10	+0.3
3,985,902	-		IAI47_18690	0.10	+0.9
3,985,902	-		IAI47_18690	0.10	-1.4
3,985,983	-		IAI47_18690	0.15	-0.1