Strain Fitness in Pantoea sp. MT58 around IAI47_17220

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
3,645,473	-				-1.1
3,645,483	-				-0.7
3,645,483	-				-1.4
3,645,483	-				-1.1
3,645,483	-				-0.7
3,645,483	-				-2.1
3,645,483	-				+1.2
3,645,483	-				+1.4
3,645,486	-				-1.4
3,645,486	-				+0.9
3,645,486	-				-0.1
3,645,514	-				+0.9
3,645,514	-				+0.7
3,645,514	-				-0.5
3,645,543	+				+0.1
3,645,543	+				-1.1
3,645,543	+				-1.4
3,645,544	-				+1.2
3,645,544	-				-1.5
3,645,547	-				+0.2
3,645,547	-				+0.0
3,645,556	-				-0.4
3,645,609	+				-0.2
3,645,609	+				+0.7
3,645,609	+				+0.3
3,645,609	+				-0.1
3,645,609	+				+0.3
3,645,610	-				+1.5
3,645,610	-				-0.2
3,645,686	+				+0.2
3,645,686	+				+0.9
3,645,686	+				-0.5
3,645,687	-				-1.7
3,645,687	-				-2.0
3,645,740	+				-0.3
3,645,779	-				-1.3
3,645,780	+				-0.4
3,645,780	+				-0.1
3,645,780	+				+0.4
3,645,781	-				+0.3
3,645,781	-				-1.5
3,645,781	-				-0.3
3,645,781	-				-1.9
3,645,781	-				-1.6
3,645,786	+				-0.3
3,645,787	-				+0.1
3,645,800	+				-0.7
3,645,811	+				+1.4
3,645,840	+				+0.9
3,645,842	+				+0.1
3,645,842	+				-0.7
3,645,842	+				+1.9
3,645,843	-				+0.1
3,645,843	-				-1.1
3,645,866	+				-0.4
3,645,876	+				-0.5
3,645,876	+				-2.6
3,645,876	+				-2.1
3,645,877	-				-1.2
3,645,877	-				-1.0
3,645,889	+				-2.7
3,645,889	+				-3.3
3,645,889	+				-3.3
3,645,889	+				-2.3
3,645,889	+				-2.0
3,645,889	+				-3.1
3,645,890	-				-2.4
3,645,896	+				-1.9
3,645,896	+				-1.1
3,645,896	+				-3.1
3,645,896	+				-2.3
3,645,896	+				-1.9
3,645,896	+				+0.3
3,645,896	+				-2.4
3,645,896	+				-2.9
3,645,896	+				-1.7
3,645,896	+				-3.1
3,645,896	+				-1.7
3,645,896	+				-0.7
3,645,897	-				-2.9
3,645,897	-				-2.9
3,645,897	-				-0.7
3,645,897	-				-3.5
3,645,897	-				-2.1
3,645,897	-				-2.3
3,645,897	-				-2.3
3,645,923	+				-2.4
3,645,923	+				-4.2
3,645,923	+				-3.1
3,645,923	+				-1.9
3,645,923	+				-3.7
3,645,924	-				-3.1
3,645,924	-				-2.5
3,645,924	-				-1.9
3,645,924	-				-1.1
3,645,924	-				-3.7
3,645,933	+				-2.4
3,645,977	+				-3.7
3,645,978	-				-2.3
3,645,978	-				-3.5
3,645,978	-				-2.8
3,645,978	-				-3.5
3,645,978	-				-1.1
3,645,978	-				-0.7
3,646,028	-				-2.9
3,646,052	+				-3.1
3,646,070	-				-5.0
3,646,117	+				-2.8
3,646,117	+				-0.1
3,646,117	+				-2.3
3,646,118	-				-2.5
3,646,118	-				-1.4
3,646,179	+				-1.7
3,646,180	-				-0.7
3,646,180	-				-1.1
3,646,180	-				-1.1
3,646,183	+				-0.9
3,646,183	+				+0.0
3,646,183	+				-0.8
3,646,183	+				-0.5
3,646,183	+				-0.5
3,646,183	+				-1.1
3,646,183	+				-1.5
3,646,184	-				-4.0
3,646,184	-				-0.7
3,646,184	-				-3.1
3,646,184	-				-2.8
3,646,184	-				-1.7
3,646,184	-				-1.4
3,646,184	-				-0.1
3,646,184	-				-1.7
3,646,184	-				-3.1
3,646,184	-				-2.4
3,646,184	-				+0.9
3,646,184	-				-1.4
3,646,211	+				+0.6
3,646,211	+				+0.9
3,646,212	-				-0.1
3,646,212	-				-3.7
3,646,212	-				-1.4
3,646,225	+				-0.3
3,646,226	-				-3.5
3,646,256	+				-1.4
3,646,256	+				-2.3
3,646,256	+				-0.1
3,646,256	+				-0.1
3,646,257	-				-2.3
3,646,257	-				-4.3
3,646,257	-				-2.9
3,646,257	-				-2.5
3,646,257	-				-1.7
3,646,267	+				-2.2
3,646,268	-				-2.8
3,646,297	+				-1.2
3,646,297	+				-0.5
3,646,298	-				-3.8
3,646,298	-				-4.0
3,646,298	-				-3.4
3,646,298	-				-2.9
3,646,298	-				-2.4
3,646,298	-				-1.1
3,646,335	+				-1.4
3,646,335	+				-1.9
3,646,373	+				+0.9
3,646,374	-				-2.3
3,646,374	-				-3.8
3,646,374	-				-2.5
3,646,374	-				-4.0
3,646,374	-				-1.7
3,646,374	-				-1.1
3,646,374	-				-4.0
3,646,374	-				-0.7
3,646,374	-				-3.9
3,646,389	+				-3.1
3,646,411	+				-2.3
3,646,412	-				-2.4
3,646,427	+				-2.8
3,646,427	+				-3.3
3,646,427	+				-3.2
3,646,427	+				-3.0
3,646,427	+				-3.3
3,646,428	-				-2.9
3,646,428	-				-4.5
3,646,428	-				-3.1
3,646,436	+				-1.1
3,646,436	+				-0.1
3,646,436	+				-2.3
3,646,436	+				-3.1
3,646,436	+				-1.1
3,646,436	+				-3.2
3,646,436	+				-2.5
3,646,436	+				-5.3
3,646,436	+				-2.9
3,646,436	+				-1.1
3,646,437	-				-2.3
3,646,437	-				-1.9
3,646,437	-				-3.0
3,646,437	-				-2.8
3,646,437	-				-1.1
3,646,437	-				-1.4
3,646,437	-				-3.0
3,646,470	+				-2.5
3,646,470	+				-3.4
3,646,470	+				-1.7
3,646,471	-				-2.9
3,646,471	-				-2.8
3,646,471	-				-0.1
3,646,471	-				-2.8
3,646,480	+				-4.7
3,646,481	-				-1.1
3,646,540	+				-3.6
3,646,540	+				-2.1
3,646,540	+				-3.5
3,646,541	-				-3.4
3,646,541	-				-3.3
3,646,541	-				-2.3
3,646,541	-				-0.7
3,646,560	+				-3.6
3,646,561	+				-1.1
3,646,561	+				-2.7
3,646,561	+				-2.3
3,646,561	+				-5.3
3,646,562	-				-2.9
3,646,562	-				-1.9
3,646,562	-				-2.7
3,646,562	-				-1.7
3,646,789	+				-1.9
3,646,789	+				-3.1
3,646,790	-				-2.9
3,646,891	+				-0.7
3,646,891	+				-2.4
3,646,891	+				-3.0
3,646,891	+				-1.7
3,646,891	+				-1.1
3,646,892	-				-2.3
3,646,892	-				-1.7
3,646,892	-				-2.3
3,646,892	-				-2.1
3,646,892	-				-2.9
3,646,892	-				-2.5
3,646,892	-				-2.3
3,646,892	-				-3.0
3,646,895	+				-2.7
3,646,896	-				-2.3
3,646,956	-				-2.1
3,646,990	+		IAI47_17220	0.11	-2.9
3,646,991	-		IAI47_17220	0.11	-1.9
3,647,024	+		IAI47_17220	0.11	-4.7
3,647,025	-		IAI47_17220	0.11	-1.1
3,647,025	-		IAI47_17220	0.11	-5.1
3,647,025	-		IAI47_17220	0.11	-0.1
3,647,059	-		IAI47_17220	0.12	-1.7
3,647,059	-		IAI47_17220	0.12	-4.6
3,647,092	+		IAI47_17220	0.12	-3.0
3,647,093	-		IAI47_17220	0.12	-0.1
3,647,093	-		IAI47_17220	0.12	-1.4
3,647,093	-		IAI47_17220	0.12	-2.5
3,647,107	+		IAI47_17220	0.13	-3.8
3,647,107	+		IAI47_17220	0.13	-2.4
3,647,108	-		IAI47_17220	0.13	-1.4
3,647,108	-		IAI47_17220	0.13	-1.7
3,647,288	-		IAI47_17220	0.16	-2.3
3,647,288	-		IAI47_17220	0.16	-1.1
3,647,381	+		IAI47_17220	0.18	-2.7
3,647,382	-		IAI47_17220	0.18	-3.5
3,647,382	-		IAI47_17220	0.18	-2.9
3,647,382	-		IAI47_17220	0.18	-3.7
3,647,382	-		IAI47_17220	0.18	-2.3
3,647,393	+		IAI47_17220	0.18	-3.7
3,647,393	+		IAI47_17220	0.18	-1.7
3,647,393	+		IAI47_17220	0.18	-2.5
3,647,393	+		IAI47_17220	0.18	-1.4
3,647,394	-		IAI47_17220	0.18	-2.5
3,647,394	-		IAI47_17220	0.18	+0.9
3,647,394	-		IAI47_17220	0.18	-1.7
3,647,424	+		IAI47_17220	0.18	-2.9
3,647,424	+		IAI47_17220	0.18	-1.4
3,647,425	-		IAI47_17220	0.18	-4.0
3,647,425	-		IAI47_17220	0.18	-3.3
3,647,507	+		IAI47_17220	0.20	-0.7
3,647,507	+		IAI47_17220	0.20	-1.7
3,647,507	+		IAI47_17220	0.20	-3.4
3,647,507	+		IAI47_17220	0.20	-3.5
3,647,507	+		IAI47_17220	0.20	-2.7
3,647,507	+		IAI47_17220	0.20	-2.4
3,647,507	+		IAI47_17220	0.20	-2.8
3,647,507	+		IAI47_17220	0.20	-1.7
3,647,507	+		IAI47_17220	0.20	-5.1
3,647,507	+		IAI47_17220	0.20	-2.8
3,647,508	-		IAI47_17220	0.20	-2.3
3,647,508	-		IAI47_17220	0.20	-1.1
3,647,508	-		IAI47_17220	0.20	-1.7
3,647,509	+		IAI47_17220	0.20	-3.3
3,647,510	-		IAI47_17220	0.20	-1.7
3,647,597	+		IAI47_17220	0.22	-3.3
3,647,597	+		IAI47_17220	0.22	-3.5
3,647,598	-		IAI47_17220	0.22	-2.4
3,647,598	-		IAI47_17220	0.22	-1.9
3,647,598	-		IAI47_17220	0.22	-2.3
3,647,624	+		IAI47_17220	0.22	-4.2
3,647,625	-		IAI47_17220	0.22	-3.3
3,647,625	-		IAI47_17220	0.22	-3.3
3,647,625	-		IAI47_17220	0.22	-0.7
3,647,625	-		IAI47_17220	0.22	-2.5
3,647,625	-		IAI47_17220	0.22	-3.1
3,647,669	+		IAI47_17220	0.23	-3.2
3,647,669	+		IAI47_17220	0.23	-3.1
3,647,669	+		IAI47_17220	0.23	-4.5
3,647,670	-		IAI47_17220	0.23	-3.6
3,647,774	+		IAI47_17220	0.25	-5.5
3,647,774	+		IAI47_17220	0.25	-2.7
3,647,775	-		IAI47_17220	0.25	-1.4
3,647,775	-		IAI47_17220	0.25	-1.7
3,647,775	-		IAI47_17220	0.25	-3.1
3,647,775	-		IAI47_17220	0.25	-3.2
3,647,792	+		IAI47_17220	0.25	-1.4
3,647,792	+		IAI47_17220	0.25	-1.4
3,647,792	+		IAI47_17220	0.25	-1.7
3,647,792	+		IAI47_17220	0.25	-3.1
3,647,795	+		IAI47_17220	0.25	-1.1
3,647,795	+		IAI47_17220	0.25	-1.9
3,647,795	+		IAI47_17220	0.25	-0.1
3,647,795	+		IAI47_17220	0.25	-3.4
3,647,795	+				-0.1
3,647,795	+		IAI47_17220	0.25	-3.0
3,647,796	-		IAI47_17220	0.25	-5.4
3,647,798	+		IAI47_17220	0.25	-2.8
3,647,798	+		IAI47_17220	0.25	-2.7
3,647,798	+		IAI47_17220	0.25	-1.4
3,647,799	-		IAI47_17220	0.25	-4.0
3,647,799	-		IAI47_17220	0.25	-1.4
3,647,799	-		IAI47_17220	0.25	-3.7
3,647,799	-		IAI47_17220	0.25	-3.3
3,647,799	-		IAI47_17220	0.25	-3.8
3,647,799	-		IAI47_17220	0.25	-3.1
3,647,799	-		IAI47_17220	0.25	-2.7
3,647,799	-		IAI47_17220	0.25	-2.4
3,647,898	-		IAI47_17220	0.27	-1.7
3,647,924	+		IAI47_17220	0.27	-3.0
3,647,924	+		IAI47_17220	0.27	-1.4
3,647,925	-		IAI47_17220	0.28	-3.4
3,647,925	-		IAI47_17220	0.28	-2.5
3,647,925	-		IAI47_17220	0.28	-0.7
3,647,925	-		IAI47_17220	0.28	-1.4
3,647,972	-		IAI47_17220	0.28	-4.5
3,647,989	+		IAI47_17220	0.29	-2.5
3,647,990	-		IAI47_17220	0.29	-4.5
3,647,990	-		IAI47_17220	0.29	-3.1
3,648,085	+		IAI47_17220	0.30	-3.0
3,648,085	+		IAI47_17220	0.30	-1.7
3,648,085	+		IAI47_17220	0.30	-3.0
3,648,085	+		IAI47_17220	0.30	-1.7
3,648,085	+		IAI47_17220	0.30	-2.9
3,648,085	+		IAI47_17220	0.30	-1.9
3,648,086	-		IAI47_17220	0.30	-3.7
3,648,086	-		IAI47_17220	0.30	-2.1
3,648,086	-		IAI47_17220	0.30	-4.3
3,648,086	-		IAI47_17220	0.30	-1.7
3,648,096	+		IAI47_17220	0.31	-1.9
3,648,097	-		IAI47_17220	0.31	-2.7
3,648,097	-		IAI47_17220	0.31	-1.9
3,648,120	-		IAI47_17220	0.31	-1.9
3,648,120	-		IAI47_17220	0.31	-1.4
3,648,140	+		IAI47_17220	0.31	-2.7
3,648,141	-		IAI47_17220	0.31	-0.7
3,648,141	-		IAI47_17220	0.31	-1.9
3,648,141	-		IAI47_17220	0.31	-2.7
3,648,141	-		IAI47_17220	0.31	-2.7
3,648,141	-		IAI47_17220	0.31	-2.8
3,648,141	-		IAI47_17220	0.31	-2.5
3,648,182	-		IAI47_17220	0.32	-2.5
3,648,228	+		IAI47_17220	0.33	-1.4
3,648,229	-		IAI47_17220	0.33	-2.8
3,648,265	-		IAI47_17220	0.34	-2.3
3,648,265	-		IAI47_17220	0.34	-1.7
3,648,445	+		IAI47_17220	0.37	-1.4
3,648,445	+		IAI47_17220	0.37	-3.3
3,648,445	+		IAI47_17220	0.37	-1.4
3,648,449	+		IAI47_17220	0.37	-2.1
3,648,449	+		IAI47_17220	0.37	-2.5
3,648,449	+		IAI47_17220	0.37	-2.9
3,648,450	-		IAI47_17220	0.37	-1.7
3,648,450	-		IAI47_17220	0.37	-4.0
3,648,450	-		IAI47_17220	0.37	-3.5
3,648,450	-		IAI47_17220	0.37	-3.2
3,648,450	-		IAI47_17220	0.37	+0.9
3,648,462	+		IAI47_17220	0.37	-2.9
3,648,517	+		IAI47_17220	0.38	-4.4
3,648,518	-		IAI47_17220	0.38	-0.7
3,648,525	-		IAI47_17220	0.38	-1.4
3,648,525	-		IAI47_17220	0.38	-1.9
3,648,581	-		IAI47_17220	0.39	-3.3
3,648,581	-		IAI47_17220	0.39	-2.4
3,648,594	-		IAI47_17220	0.40	-1.7
3,648,594	-		IAI47_17220	0.40	-2.7
3,648,619	+		IAI47_17220	0.40	-4.7
3,648,619	+		IAI47_17220	0.40	-3.3
3,648,620	-		IAI47_17220	0.40	-2.7
3,648,620	-		IAI47_17220	0.40	-3.1
3,648,656	+		IAI47_17220	0.41	-2.3
3,648,668	-		IAI47_17220	0.41	-2.7
3,648,721	-		IAI47_17220	0.42	-2.7
3,648,721	-		IAI47_17220	0.42	-2.5
3,648,784	+		IAI47_17220	0.43	-2.8
3,648,784	+		IAI47_17220	0.43	-2.4
3,648,785	-		IAI47_17220	0.43	-3.9
3,648,815	+		IAI47_17220	0.44	-1.9
3,648,816	-		IAI47_17220	0.44	-2.3
3,648,831	+		IAI47_17220	0.44	-3.8
3,648,832	-		IAI47_17220	0.44	-1.9
3,648,835	+		IAI47_17220	0.44	-2.1
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3,648,835	+		IAI47_17220	0.44	-3.8
3,648,835	+		IAI47_17220	0.44	-1.1
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3,648,835	+		IAI47_17220	0.44	-4.2
3,648,836	-		IAI47_17220	0.44	-4.1
3,648,902	-		IAI47_17220	0.45	-3.3
3,649,015	+		IAI47_17220	0.47	-2.4
3,649,016	-		IAI47_17220	0.47	-3.7
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3,649,050	-		IAI47_17220	0.48	-1.1
3,649,050	-		IAI47_17220	0.48	-2.8
3,649,050	-		IAI47_17220	0.48	-0.7
3,649,050	-		IAI47_17220	0.48	-3.8
3,649,050	-		IAI47_17220	0.48	-3.5
3,649,050	-		IAI47_17220	0.48	-1.7
3,649,050	-		IAI47_17220	0.48	-2.8
3,649,060	+		IAI47_17220	0.48	-1.9
3,649,060	+		IAI47_17220	0.48	-3.7
3,649,060	+		IAI47_17220	0.48	-2.5
3,649,060	+		IAI47_17220	0.48	-1.9
3,649,060	+		IAI47_17220	0.48	-2.5
3,649,060	+		IAI47_17220	0.48	-3.2
3,649,060	+		IAI47_17220	0.48	-3.1
3,649,060	+		IAI47_17220	0.48	-0.1
3,649,061	-		IAI47_17220	0.48	-3.3
3,649,157	+		IAI47_17220	0.50	-2.9
3,649,158	-		IAI47_17220	0.50	-3.7
3,649,158	-		IAI47_17220	0.50	-2.8
3,649,328	-		IAI47_17220	0.53	-3.3
3,649,359	+		IAI47_17220	0.53	-3.7
3,649,391	+		IAI47_17220	0.54	-3.5
3,649,391	+		IAI47_17220	0.54	-1.1
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3,649,392	-		IAI47_17220	0.54	-1.9
3,649,392	-		IAI47_17220	0.54	-3.3
3,649,392	-		IAI47_17220	0.54	-2.8
3,649,392	-		IAI47_17220	0.54	-3.0
3,649,402	+		IAI47_17220	0.54	-3.7
3,649,402	+		IAI47_17220	0.54	-5.3
3,649,402	+		IAI47_17220	0.54	-3.1
3,649,402	+		IAI47_17220	0.54	-2.7
3,649,402	+		IAI47_17220	0.54	-2.4
3,649,403	-		IAI47_17220	0.54	-4.2
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3,649,403	-		IAI47_17220	0.54	-3.4
3,649,403	-		IAI47_17220	0.54	-3.6
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3,649,441	-		IAI47_17220	0.55	-1.4
3,649,459	+		IAI47_17220	0.55	-2.7
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3,649,541	-		IAI47_17220	0.57	-1.7
3,649,558	+		IAI47_17220	0.57	-1.9
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3,649,600	+		IAI47_17220	0.58	-1.7
3,649,600	+		IAI47_17220	0.58	-1.7
3,649,600	+		IAI47_17220	0.58	-3.9
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3,649,756	-		IAI47_17220	0.61	-1.7
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3,649,852	-		IAI47_17220	0.62	-0.1
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3,650,477	+		IAI47_17220	0.74	-4.9
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3,651,038	+		IAI47_17220	0.84	-2.1
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3,651,038	+		IAI47_17220	0.84	-1.9
3,651,038	+		IAI47_17220	0.84	-3.1
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3,651,040	+		IAI47_17220	0.84	-4.2
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3,651,122	+		IAI47_17220	0.85	-3.0
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3,651,386	-				-1.8
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3,652,473	-		IAI47_17225	0.20	-3.7
3,652,473	-		IAI47_17225	0.20	-1.9
3,652,473	-		IAI47_17225	0.20	-2.3
3,652,473	-		IAI47_17225	0.20	-2.3
3,652,497	+		IAI47_17225	0.21	-2.3
3,652,590	+		IAI47_17225	0.27	-2.4
3,652,590	+		IAI47_17225	0.27	-2.4
3,652,591	-		IAI47_17225	0.27	-2.5
3,652,591	-		IAI47_17225	0.27	-3.5
3,652,591	-		IAI47_17225	0.27	-2.1
3,652,633	-		IAI47_17225	0.29	-1.7
3,652,633	-		IAI47_17225	0.29	-2.8
3,652,644	+		IAI47_17225	0.30	-2.7
3,652,644	+		IAI47_17225	0.30	-2.3
3,652,644	+		IAI47_17225	0.30	-2.4
3,652,645	-		IAI47_17225	0.30	-1.4
3,652,651	+		IAI47_17225	0.30	-2.3
3,652,651	+		IAI47_17225	0.30	-0.1
3,652,651	+		IAI47_17225	0.30	-3.2
3,652,651	+		IAI47_17225	0.30	-4.9
3,652,770	+		IAI47_17225	0.37	-3.7
3,652,770	+		IAI47_17225	0.37	-1.9
3,652,770	+		IAI47_17225	0.37	-4.3
3,652,770	+		IAI47_17225	0.37	-1.4
3,652,770	+		IAI47_17225	0.37	-4.4
3,652,770	+		IAI47_17225	0.37	-2.7
3,652,770	+		IAI47_17225	0.37	-1.1
3,652,770	+		IAI47_17225	0.37	-2.8
3,652,771	-		IAI47_17225	0.37	-0.1
3,652,771	-		IAI47_17225	0.37	-1.7
3,652,771	-		IAI47_17225	0.37	-1.7
3,652,783	+		IAI47_17225	0.38	-3.6
3,652,784	-		IAI47_17225	0.38	-1.1
3,652,839	+		IAI47_17225	0.41	-1.7
3,652,882	+		IAI47_17225	0.43	-1.4
3,652,882	+		IAI47_17225	0.43	-4.5
3,652,883	-		IAI47_17225	0.43	-3.8
3,652,883	-		IAI47_17225	0.43	-1.4
3,652,883	-		IAI47_17225	0.43	-2.4