Strain Fitness in Pantoea sp. MT58 around IAI47_17155

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
3,632,632	+		IAI47_17145	0.11	+0.6
3,632,656	+		IAI47_17145	0.13	+0.1
3,632,657	-		IAI47_17145	0.14	+0.7
3,632,657	-		IAI47_17145	0.14	-0.1
3,632,713	+		IAI47_17145	0.20	+1.3
3,632,713	+		IAI47_17145	0.20	+0.1
3,632,714	-		IAI47_17145	0.21	-0.3
3,632,714	-		IAI47_17145	0.21	-0.1
3,632,714	-		IAI47_17145	0.21	-0.4
3,632,714	-		IAI47_17145	0.21	-0.3
3,632,715	+		IAI47_17145	0.21	-0.2
3,632,715	+		IAI47_17145	0.21	-0.3
3,632,715	+		IAI47_17145	0.21	-1.2
3,632,715	+		IAI47_17145	0.21	-0.9
3,632,715	+		IAI47_17145	0.21	+0.1
3,632,715	+		IAI47_17145	0.21	-1.1
3,632,715	+		IAI47_17145	0.21	+0.3
3,632,715	+		IAI47_17145	0.21	-0.3
3,632,715	+		IAI47_17145	0.21	+0.1
3,632,715	+		IAI47_17145	0.21	-1.0
3,632,715	+		IAI47_17145	0.21	-0.4
3,632,715	+		IAI47_17145	0.21	-1.9
3,632,715	+		IAI47_17145	0.21	+0.2
3,632,716	-		IAI47_17145	0.21	+1.0
3,632,716	-		IAI47_17145	0.21	+0.3
3,632,716	-		IAI47_17145	0.21	+0.0
3,632,716	-		IAI47_17145	0.21	+0.2
3,632,716	-		IAI47_17145	0.21	-0.4
3,632,716	-		IAI47_17145	0.21	+0.0
3,632,716	-		IAI47_17145	0.21	-0.1
3,632,716	-		IAI47_17145	0.21	-1.4
3,632,716	-		IAI47_17145	0.21	+1.9
3,632,716	-		IAI47_17145	0.21	-1.1
3,632,716	-		IAI47_17145	0.21	-0.8
3,632,716	-		IAI47_17145	0.21	-1.0
3,632,716	-		IAI47_17145	0.21	-1.1
3,632,716	-		IAI47_17145	0.21	+1.6
3,632,716	-		IAI47_17145	0.21	-0.7
3,632,716	-		IAI47_17145	0.21	+1.2
3,632,716	-		IAI47_17145	0.21	+0.6
3,632,721	+		IAI47_17145	0.21	+2.2
3,632,721	+		IAI47_17145	0.21	+1.2
3,632,721	+		IAI47_17145	0.21	+0.5
3,632,721	+		IAI47_17145	0.21	+0.9
3,632,721	+		IAI47_17145	0.21	+0.6
3,632,721	+		IAI47_17145	0.21	+1.9
3,632,721	+		IAI47_17145	0.21	+1.5
3,632,721	+		IAI47_17145	0.21	+2.9
3,632,721	+		IAI47_17145	0.21	-0.1
3,632,721	+		IAI47_17145	0.21	+2.8
3,632,722	-		IAI47_17145	0.22	-0.1
3,632,722	-		IAI47_17145	0.22	+0.2
3,632,722	-		IAI47_17145	0.22	+0.2
3,632,722	-		IAI47_17145	0.22	+0.1
3,632,722	-		IAI47_17145	0.22	-1.8
3,632,722	-		IAI47_17145	0.22	-0.3
3,632,722	-		IAI47_17145	0.22	-2.1
3,632,722	-		IAI47_17145	0.22	+0.3
3,632,722	-		IAI47_17145	0.22	+0.0
3,632,722	-		IAI47_17145	0.22	-0.8
3,632,722	-		IAI47_17145	0.22	+0.3
3,632,731	+		IAI47_17145	0.23	-1.3
3,632,732	-		IAI47_17145	0.23	-0.3
3,632,732	-		IAI47_17145	0.23	+0.3
3,632,732	-		IAI47_17145	0.23	+0.3
3,632,732	-		IAI47_17145	0.23	+1.1
3,632,738	+		IAI47_17145	0.24	-0.3
3,632,738	+		IAI47_17145	0.24	-0.7
3,632,738	+		IAI47_17145	0.24	-2.8
3,632,738	+		IAI47_17145	0.24	+0.1
3,632,739	-		IAI47_17145	0.24	-1.9
3,632,747	+		IAI47_17145	0.25	-0.2
3,632,767	+		IAI47_17145	0.27	+0.9
3,632,767	+		IAI47_17145	0.27	+1.5
3,632,767	+		IAI47_17145	0.27	-0.7
3,632,768	-		IAI47_17145	0.27	+2.2
3,632,791	+		IAI47_17145	0.30	-1.7
3,632,792	-		IAI47_17145	0.30	+0.3
3,632,792	-		IAI47_17145	0.30	+1.5
3,632,792	-		IAI47_17145	0.30	+3.1
3,632,811	-		IAI47_17145	0.32	+1.6
3,632,827	+		IAI47_17145	0.34	+1.2
3,632,827	+		IAI47_17145	0.34	-1.4
3,632,828	-		IAI47_17145	0.35	+0.9
3,632,828	-		IAI47_17145	0.35	+0.1
3,632,984	+		IAI47_17145	0.54	-3.0
3,632,984	+		IAI47_17145	0.54	+0.7
3,632,984	+		IAI47_17145	0.54	-0.7
3,632,984	+		IAI47_17145	0.54	+1.3
3,632,985	-		IAI47_17145	0.54	-2.8
3,632,985	-		IAI47_17145	0.54	+0.9
3,632,985	-		IAI47_17145	0.54	+0.4
3,632,985	-		IAI47_17145	0.54	+1.9
3,633,023	-		IAI47_17145	0.58	-3.1
3,633,023	-		IAI47_17145	0.58	-0.3
3,633,023	-		IAI47_17145	0.58	+2.5
3,633,023	-		IAI47_17145	0.58	+0.3
3,633,023	-		IAI47_17145	0.58	+0.3
3,633,055	-		IAI47_17145	0.62	-0.7
3,633,055	-		IAI47_17145	0.62	-0.4
3,633,062	+		IAI47_17145	0.63	+1.7
3,633,063	-		IAI47_17145	0.63	-0.3
3,633,063	-		IAI47_17145	0.63	+0.9
3,633,070	+		IAI47_17145	0.64	-0.2
3,633,070	+		IAI47_17145	0.64	-0.8
3,633,071	-		IAI47_17145	0.64	+0.1
3,633,121	-		IAI47_17145	0.70	+1.9
3,633,121	-		IAI47_17145	0.70	+1.4
3,633,127	+		IAI47_17145	0.71	-0.7
3,633,209	+		IAI47_17145	0.81	+1.7
3,633,296	-				-0.3
3,633,362	+		IAI47_17150	0.11	+0.5
3,633,362	+		IAI47_17150	0.11	-0.3
3,633,362	+		IAI47_17150	0.11	-0.4
3,633,363	-		IAI47_17150	0.12	+0.3
3,633,363	-		IAI47_17150	0.12	-1.4
3,633,365	+		IAI47_17150	0.12	+0.3
3,633,365	+		IAI47_17150	0.12	+0.7
3,633,365	+		IAI47_17150	0.12	+1.3
3,633,365	+		IAI47_17150	0.12	+0.9
3,633,366	-		IAI47_17150	0.13	+2.5
3,633,366	-		IAI47_17150	0.13	-1.1
3,633,366	-		IAI47_17150	0.13	+4.2
3,633,374	+		IAI47_17150	0.16	-0.4
3,633,375	-		IAI47_17150	0.16	-1.3
3,633,375	-		IAI47_17150	0.16	+0.7
3,633,375	-		IAI47_17150	0.16	+0.2
3,633,375	-		IAI47_17150	0.16	-0.1
3,633,387	+		IAI47_17150	0.21	+0.9
3,633,387	+		IAI47_17150	0.21	+1.2
3,633,387	+		IAI47_17150	0.21	-0.8
3,633,387	+		IAI47_17150	0.21	-0.1
3,633,388	-		IAI47_17150	0.21	+1.8
3,633,388	-		IAI47_17150	0.21	+0.5
3,633,399	-		IAI47_17150	0.26	-0.4
3,633,399	-		IAI47_17150	0.26	-0.1
3,633,406	+		IAI47_17150	0.28	-0.7
3,633,432	-		IAI47_17150	0.38	-0.9
3,633,437	+		IAI47_17150	0.40	+0.2
3,633,438	-		IAI47_17150	0.41	+1.2
3,633,448	-		IAI47_17150	0.45	-0.3
3,633,453	+		IAI47_17150	0.47	-0.3
3,633,454	-		IAI47_17150	0.47	+1.5
3,633,476	+		IAI47_17150	0.55	+1.4
3,633,476	+		IAI47_17150	0.55	+1.1
3,633,536	+		IAI47_17150	0.79	-2.0
3,633,536	+		IAI47_17150	0.79	+0.4
3,633,537	-		IAI47_17150	0.79	-1.0
3,633,537	-		IAI47_17150	0.79	+0.9
3,633,537	-		IAI47_17150	0.79	+0.9
3,633,596	+				-2.3
3,633,596	+				-0.8
3,633,596	+				-0.8
3,633,596	+				-1.3
3,633,596	+				-0.6
3,633,597	-				-0.4
3,633,637	+				+0.2
3,633,637	+				-0.3
3,633,637	+				-0.8
3,633,637	+				-0.7
3,633,637	+				+1.5
3,633,637	+				+0.7
3,633,637	+				-0.1
3,633,637	+				-1.0
3,633,637	+				-2.4
3,633,660	+				-2.4
3,633,671	+				-1.3
3,633,671	+				-2.1
3,633,671	+				-0.8
3,633,671	+				+0.5
3,633,671	+				-1.1
3,633,671	+				-1.3
3,633,671	+				+0.3
3,633,672	-				-1.1
3,633,822	+		IAI47_17155	0.24	-0.8
3,633,822	+		IAI47_17155	0.24	-0.1
3,633,833	+		IAI47_17155	0.25	-0.9
3,633,871	+		IAI47_17155	0.29	-0.1
3,633,871	+		IAI47_17155	0.29	-1.7
3,633,871	+		IAI47_17155	0.29	-0.5
3,633,872	-		IAI47_17155	0.29	-0.4
3,633,882	+		IAI47_17155	0.30	-0.1
3,633,882	+		IAI47_17155	0.30	-0.3
3,633,882	+		IAI47_17155	0.30	+0.3
3,633,882	+		IAI47_17155	0.30	-0.1
3,633,883	-		IAI47_17155	0.30	+0.7
3,633,883	-		IAI47_17155	0.30	-0.7
3,633,883	-		IAI47_17155	0.30	+1.9
3,633,891	-		IAI47_17155	0.31	-0.4
3,633,922	-		IAI47_17155	0.34	-1.3
3,633,960	+		IAI47_17155	0.38	-0.4
3,633,960	+		IAI47_17155	0.38	-1.3
3,633,992	+		IAI47_17155	0.41	-0.9
3,633,992	+		IAI47_17155	0.41	-0.4
3,633,999	+		IAI47_17155	0.42	-0.1
3,633,999	+		IAI47_17155	0.42	-0.1
3,634,000	-		IAI47_17155	0.42	-0.1
3,634,000	-		IAI47_17155	0.42	-0.7
3,634,000	-		IAI47_17155	0.42	-1.1
3,634,003	+		IAI47_17155	0.42	-0.1
3,634,003	+		IAI47_17155	0.42	-1.4
3,634,003	+		IAI47_17155	0.42	+0.3
3,634,004	-		IAI47_17155	0.42	-1.1
3,634,004	-		IAI47_17155	0.42	-0.8
3,634,051	-		IAI47_17155	0.47	+1.9
3,634,051	-		IAI47_17155	0.47	-0.9
3,634,108	-		IAI47_17155	0.53	-2.3
3,634,143	+		IAI47_17155	0.56	+0.2
3,634,143	+		IAI47_17155	0.56	-1.2
3,634,143	+		IAI47_17155	0.56	-0.9
3,634,143	+		IAI47_17155	0.56	+4.1
3,634,144	-		IAI47_17155	0.57	+0.8
3,634,144	-		IAI47_17155	0.57	-1.2
3,634,145	+		IAI47_17155	0.57	-1.1
3,634,145	+		IAI47_17155	0.57	-1.8
3,634,145	+		IAI47_17155	0.57	-0.4
3,634,146	-		IAI47_17155	0.57	+0.3
3,634,146	-		IAI47_17155	0.57	-2.3
3,634,146	-		IAI47_17155	0.57	-0.4
3,634,146	-		IAI47_17155	0.57	-0.7
3,634,177	-		IAI47_17155	0.60	-0.4
3,634,177	-		IAI47_17155	0.60	+0.9
3,634,198	+		IAI47_17155	0.62	-1.7
3,634,198	+		IAI47_17155	0.62	-1.7
3,634,198	+		IAI47_17155	0.62	+0.7
3,634,198	+		IAI47_17155	0.62	+0.5
3,634,236	+		IAI47_17155	0.66	+1.1
3,634,237	-		IAI47_17155	0.66	+0.3
3,634,339	+		IAI47_17155	0.76	+0.3
3,634,339	+		IAI47_17155	0.76	-1.5
3,634,339	+		IAI47_17155	0.76	+0.1
3,634,339	+		IAI47_17155	0.76	-0.9
3,634,339	+		IAI47_17155	0.76	-0.5
3,634,339	+		IAI47_17155	0.76	+0.2
3,634,340	-		IAI47_17155	0.77	+0.9
3,634,341	+		IAI47_17155	0.77	-0.0
3,634,341	+		IAI47_17155	0.77	-1.0
3,634,341	+		IAI47_17155	0.77	-0.3
3,634,342	-		IAI47_17155	0.77	+0.6
3,634,342	-		IAI47_17155	0.77	-1.1
3,634,342	-		IAI47_17155	0.77	-1.9
3,634,344	+		IAI47_17155	0.77	+2.7
3,634,344	+		IAI47_17155	0.77	-0.1
3,634,344	+		IAI47_17155	0.77	-2.9
3,634,344	+		IAI47_17155	0.77	-1.5
3,634,344	+		IAI47_17155	0.77	+0.2
3,634,345	-		IAI47_17155	0.77	+0.3
3,634,345	-		IAI47_17155	0.77	-0.5
3,634,345	-		IAI47_17155	0.77	-0.8
3,634,396	+		IAI47_17155	0.82	-0.3
3,634,396	+		IAI47_17155	0.82	+1.2
3,634,396	+		IAI47_17155	0.82	+0.2
3,634,505	+				+0.9
3,634,558	-				-0.3
3,634,568	-				+0.0
3,634,585	+				-1.7
3,634,585	+				-0.1
3,634,585	+				-0.7
3,634,585	+				-1.1
3,634,585	+				-1.1
3,634,585	+				+0.9
3,634,585	+				-0.8
3,634,585	+				-0.7
3,635,562	+				-0.2
3,635,562	+				-1.0