Strain Fitness in Pantoea sp. MT58 around IAI47_16010

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
3,380,281	+				-3.5
3,380,281	+				-1.1
3,380,282	-				-1.7
3,380,282	-				-4.0
3,380,282	-				-2.1
3,380,293	+		IAI47_16005	0.11	-2.4
3,380,294	-		IAI47_16005	0.11	-1.1
3,380,294	-		IAI47_16005	0.11	-1.4
3,380,303	+		IAI47_16005	0.12	-4.3
3,380,304	-		IAI47_16005	0.12	-3.3
3,380,304	-		IAI47_16005	0.12	-2.1
3,380,304	-		IAI47_16005	0.12	-1.4
3,380,427	+		IAI47_16005	0.23	-1.9
3,380,428	-		IAI47_16005	0.23	-4.0
3,380,428	-		IAI47_16005	0.23	-3.3
3,380,482	+		IAI47_16005	0.28	-2.0
3,380,482	+		IAI47_16005	0.28	-3.8
3,380,482	+		IAI47_16005	0.28	-3.2
3,380,483	-		IAI47_16005	0.28	-0.7
3,380,494	+		IAI47_16005	0.29	-3.7
3,380,516	+		IAI47_16005	0.31	-2.1
3,380,517	-		IAI47_16005	0.31	-1.4
3,380,517	-		IAI47_16005	0.31	-3.0
3,380,609	+		IAI47_16005	0.40	-2.9
3,380,609	+		IAI47_16005	0.40	+0.4
3,380,609	+		IAI47_16005	0.40	-1.9
3,380,610	-		IAI47_16005	0.40	-2.1
3,380,610	-		IAI47_16005	0.40	-2.4
3,380,610	-		IAI47_16005	0.40	-1.9
3,380,610	-		IAI47_16005	0.40	+0.9
3,380,610	-		IAI47_16005	0.40	-2.4
3,380,675	+		IAI47_16005	0.46	-0.7
3,380,675	+		IAI47_16005	0.46	-1.1
3,380,675	+		IAI47_16005	0.46	-4.7
3,380,675	+		IAI47_16005	0.46	-3.3
3,380,676	-		IAI47_16005	0.46	-2.6
3,380,758	+		IAI47_16005	0.53	-2.6
3,380,759	-		IAI47_16005	0.53	-2.7
3,380,764	+		IAI47_16005	0.54	-1.4
3,380,764	+		IAI47_16005	0.54	-2.3
3,380,764	+		IAI47_16005	0.54	-3.9
3,380,764	+		IAI47_16005	0.54	-2.9
3,380,765	-		IAI47_16005	0.54	-4.3
3,380,765	-		IAI47_16005	0.54	-1.7
3,380,823	-		IAI47_16005	0.59	-2.3
3,380,849	+		IAI47_16005	0.62	-3.0
3,380,849	+		IAI47_16005	0.62	-1.4
3,380,849	+		IAI47_16005	0.62	-3.0
3,380,849	+		IAI47_16005	0.62	-3.6
3,380,849	+		IAI47_16005	0.62	-0.7
3,380,849	+		IAI47_16005	0.62	-0.1
3,380,849	+		IAI47_16005	0.62	-2.1
3,380,849	+		IAI47_16005	0.62	-2.3
3,380,849	+		IAI47_16005	0.62	-3.9
3,380,849	+		IAI47_16005	0.62	-3.0
3,380,850	-		IAI47_16005	0.62	-1.7
3,380,850	-		IAI47_16005	0.62	-0.1
3,380,850	-		IAI47_16005	0.62	-3.3
3,380,850	-		IAI47_16005	0.62	-2.6
3,380,850	-		IAI47_16005	0.62	-1.7
3,380,850	-		IAI47_16005	0.62	-3.0
3,380,850	-		IAI47_16005	0.62	-1.4
3,380,850	-		IAI47_16005	0.62	-3.0
3,380,850	-		IAI47_16005	0.62	-0.1
3,380,850	-		IAI47_16005	0.62	-3.2
3,380,971	+		IAI47_16005	0.73	-2.6
3,381,058	+		IAI47_16005	0.81	-4.0
3,381,058	+		IAI47_16005	0.81	+0.9
3,381,059	-		IAI47_16005	0.81	-2.4
3,381,059	-		IAI47_16005	0.81	-1.7
3,381,108	-		IAI47_16005	0.85	-2.7
3,381,139	+		IAI47_16005	0.88	-1.4
3,381,139	+		IAI47_16005	0.88	-3.6
3,381,251	-				-2.6
3,381,283	+				-2.1
3,381,283	+				-1.4
3,381,284	-				-2.9
3,381,284	-				-1.4
3,381,284	-				-1.4
3,381,285	+				-2.3
3,381,285	+				-0.1
3,381,295	+				-4.2
3,381,295	+				-0.1
3,381,296	-				-3.3
3,381,296	-				-0.7
3,381,340	+				-2.3
3,381,340	+				-1.9
3,381,340	+				-1.1
3,381,340	+				-2.7
3,381,341	-				-2.9
3,381,345	+				-0.1
3,381,345	+				-1.9
3,381,345	+				-2.9
3,381,345	+				-0.7
3,381,346	-				-2.1
3,381,416	+		IAI47_16010	0.10	-4.6
3,381,417	-		IAI47_16010	0.10	-2.8
3,381,417	-		IAI47_16010	0.10	-2.9
3,381,417	-		IAI47_16010	0.10	-1.1
3,381,482	+		IAI47_16010	0.15	-2.4
3,381,482	+		IAI47_16010	0.15	-1.9
3,381,482	+		IAI47_16010	0.15	-2.6
3,381,482	+		IAI47_16010	0.15	-4.6
3,381,483	-		IAI47_16010	0.15	-1.7
3,381,553	+		IAI47_16010	0.20	-1.9
3,381,553	+		IAI47_16010	0.20	-2.6
3,381,554	-		IAI47_16010	0.20	-3.5
3,381,554	-		IAI47_16010	0.20	-4.4
3,381,561	+		IAI47_16010	0.20	-2.4
3,381,561	+		IAI47_16010	0.20	-2.9
3,381,561	+		IAI47_16010	0.20	-3.6
3,381,561	+		IAI47_16010	0.20	-3.1
3,381,561	+		IAI47_16010	0.20	-2.3
3,381,561	+		IAI47_16010	0.20	-3.7
3,381,561	+		IAI47_16010	0.20	-4.5
3,381,561	+		IAI47_16010	0.20	-2.7
3,381,562	-		IAI47_16010	0.21	-2.3
3,381,562	-		IAI47_16010	0.21	-1.4
3,381,562	-		IAI47_16010	0.21	-3.4
3,381,562	-		IAI47_16010	0.21	-2.7
3,381,617	+		IAI47_16010	0.24	-2.9
3,381,617	+		IAI47_16010	0.24	-0.1
3,381,618	-		IAI47_16010	0.25	-1.7
3,381,724	+		IAI47_16010	0.32	-4.5
3,381,724	+		IAI47_16010	0.32	-2.4
3,381,724	+		IAI47_16010	0.32	-1.7
3,381,724	+		IAI47_16010	0.32	-3.2
3,381,724	+		IAI47_16010	0.32	-4.3
3,381,724	+		IAI47_16010	0.32	-2.9
3,381,724	+		IAI47_16010	0.32	-2.6
3,381,724	+		IAI47_16010	0.32	-3.3
3,381,725	-		IAI47_16010	0.32	-4.7
3,381,725	-		IAI47_16010	0.32	-4.2
3,381,725	-		IAI47_16010	0.32	-0.7
3,381,725	-		IAI47_16010	0.32	-0.1
3,381,725	-		IAI47_16010	0.32	-3.8
3,381,725	-		IAI47_16010	0.32	+0.9
3,381,725	-		IAI47_16010	0.32	-2.9
3,381,778	+		IAI47_16010	0.36	-3.6
3,381,778	+		IAI47_16010	0.36	-3.7
3,381,779	-		IAI47_16010	0.36	-1.4
3,381,779	-		IAI47_16010	0.36	-4.0
3,381,804	-		IAI47_16010	0.38	-3.4
3,381,836	+		IAI47_16010	0.40	-2.3
3,381,836	+		IAI47_16010	0.40	-2.9
3,381,864	+		IAI47_16010	0.42	-4.2
3,381,864	+		IAI47_16010	0.42	-2.4
3,381,865	-		IAI47_16010	0.42	-1.1
3,381,865	-		IAI47_16010	0.42	-2.1
3,381,865	-		IAI47_16010	0.42	-3.4
3,381,917	+		IAI47_16010	0.46	-1.4
3,381,917	+		IAI47_16010	0.46	-2.8
3,381,917	+		IAI47_16010	0.46	-1.7
3,381,917	+		IAI47_16010	0.46	-0.7
3,381,917	+		IAI47_16010	0.46	-2.7
3,381,917	+		IAI47_16010	0.46	-1.9
3,381,918	-		IAI47_16010	0.46	-1.1
3,381,918	-		IAI47_16010	0.46	-2.4
3,381,967	+		IAI47_16010	0.49	-3.8
3,381,968	-		IAI47_16010	0.49	-2.3
3,381,983	+		IAI47_16010	0.50	-3.9
3,381,984	-		IAI47_16010	0.51	-3.7
3,381,984	-		IAI47_16010	0.51	-3.0
3,381,984	-		IAI47_16010	0.51	-3.5
3,381,984	-		IAI47_16010	0.51	-3.7
3,381,984	-		IAI47_16010	0.51	-1.7
3,381,993	+		IAI47_16010	0.51	-1.7
3,381,993	+		IAI47_16010	0.51	-3.0
3,382,050	+		IAI47_16010	0.55	-1.7
3,382,050	+		IAI47_16010	0.55	-3.2
3,382,050	+		IAI47_16010	0.55	-3.3
3,382,086	+		IAI47_16010	0.58	-3.0
3,382,086	+		IAI47_16010	0.58	-4.4
3,382,086	+		IAI47_16010	0.58	-1.1
3,382,086	+		IAI47_16010	0.58	-4.6
3,382,086	+		IAI47_16010	0.58	-2.9
3,382,086	+		IAI47_16010	0.58	-0.7
3,382,086	+		IAI47_16010	0.58	-2.7
3,382,087	-		IAI47_16010	0.58	-2.6
3,382,087	-		IAI47_16010	0.58	-3.7
3,382,087	-		IAI47_16010	0.58	+0.9
3,382,087	-		IAI47_16010	0.58	-2.7
3,382,087	-		IAI47_16010	0.58	-3.5
3,382,087	-		IAI47_16010	0.58	-0.7
3,382,087	-		IAI47_16010	0.58	-4.2
3,382,087	-		IAI47_16010	0.58	-3.9
3,382,096	+		IAI47_16010	0.58	-3.3
3,382,097	-		IAI47_16010	0.59	-3.4
3,382,097	-		IAI47_16010	0.59	-2.4
3,382,097	-		IAI47_16010	0.59	-1.9
3,382,242	+		IAI47_16010	0.69	-1.4
3,382,242	+		IAI47_16010	0.69	-1.7
3,382,243	-		IAI47_16010	0.69	-2.6
3,382,265	+		IAI47_16010	0.71	-1.1
3,382,266	-		IAI47_16010	0.71	-3.0
3,382,322	+		IAI47_16010	0.75	-1.9
3,382,322	+		IAI47_16010	0.75	-1.4
3,382,323	-		IAI47_16010	0.75	-2.7
3,382,323	-		IAI47_16010	0.75	-2.4
3,382,323	-		IAI47_16010	0.75	-3.1
3,382,445	+		IAI47_16010	0.83	-3.7
3,382,548	-				-2.7
3,382,548	-				-3.4
3,382,548	-				-3.5
3,382,548	-				-2.7
3,382,560	-				-2.1
3,382,560	-				-2.1
3,382,560	-				-2.3
3,382,592	+				-2.6
3,382,592	+				-1.7
3,382,592	+				+0.9
3,382,593	-				-3.0
3,382,593	-				-1.7
3,382,593	-				-2.7
3,382,593	-				-1.7
3,382,593	-				-2.4
3,382,677	+				-2.6
3,382,677	+				-4.9
3,382,677	+				-3.3
3,382,677	+				-1.7
3,382,677	+				-4.1
3,382,677	+				+0.9
3,382,678	-				-2.6
3,382,678	-				-1.4
3,382,678	-				-3.6
3,382,678	-				-3.6
3,382,678	-				-1.9
3,382,678	-				-2.1
3,382,678	-				-2.1
3,382,691	+				-3.2
3,382,692	-				-2.6
3,382,844	+		IAI47_16015	0.27	-4.0
3,382,845	-		IAI47_16015	0.27	-1.7
3,382,874	+		IAI47_16015	0.32	-2.9
3,382,874	+		IAI47_16015	0.32	-3.1
3,382,874	+		IAI47_16015	0.32	-0.1
3,382,875	-		IAI47_16015	0.32	-3.5
3,382,886	+		IAI47_16015	0.33	-3.3
3,382,887	-		IAI47_16015	0.34	-2.7
3,383,006	+		IAI47_16015	0.53	-1.7
3,383,008	+		IAI47_16015	0.54	-1.7
3,383,054	-		IAI47_16015	0.61	-3.1
3,383,161	-		IAI47_16015	0.79	-3.1
3,383,177	+		IAI47_16015	0.82	-1.9
3,383,201	+		IAI47_16015	0.85	-0.7
3,383,201	+		IAI47_16015	0.85	-1.1
3,383,201	+		IAI47_16015	0.85	-2.4
3,383,201	+		IAI47_16015	0.85	-0.7
3,383,202	-		IAI47_16015	0.86	-1.7
3,383,202	-		IAI47_16015	0.86	-2.6
3,383,202	-		IAI47_16015	0.86	-3.1
3,383,256	+				-3.0
3,383,256	+				-2.3
3,383,257	-				-4.3
3,383,257	-				-3.0
3,383,257	-				-1.1
3,383,257	-				-3.3
3,383,296	-				-0.1
3,383,329	+				-0.3
3,383,329	+				+0.2
3,383,330	-				-0.9
3,383,330	-				-0.6
3,383,331	+				-0.1
3,383,331	+				+1.1
3,383,331	+				+0.9
3,383,331	+				+1.2
3,383,331	+				+0.9
3,383,332	-				+0.3
3,383,332	-				+0.3
3,383,535	+		IAI47_16020	0.18	-0.5
3,383,535	+		IAI47_16020	0.18	+0.5
3,383,535	+		IAI47_16020	0.18	+0.9
3,383,535	+		IAI47_16020	0.18	+0.7
3,383,536	-		IAI47_16020	0.18	-0.1
3,383,546	+		IAI47_16020	0.18	-2.4
3,383,547	-		IAI47_16020	0.19	-0.0
3,383,547	-		IAI47_16020	0.19	-1.1
3,383,547	-		IAI47_16020	0.19	-1.3
3,383,547	-		IAI47_16020	0.19	+1.0
3,383,547	-		IAI47_16020	0.19	-0.6
3,383,567	+		IAI47_16020	0.20	+0.4
3,383,568	-		IAI47_16020	0.20	-1.6
3,383,568	-		IAI47_16020	0.20	-3.2
3,383,568	-		IAI47_16020	0.20	+0.1
3,383,577	+		IAI47_16020	0.21	-0.3
3,383,577	+		IAI47_16020	0.21	-0.2
3,383,577	+		IAI47_16020	0.21	-0.7
3,383,577	+		IAI47_16020	0.21	+0.0
3,383,578	-		IAI47_16020	0.21	-2.4
3,383,578	-		IAI47_16020	0.21	+0.2
3,383,578	-		IAI47_16020	0.21	+2.4
3,383,578	-		IAI47_16020	0.21	-0.5