Strain Fitness in Pantoea sp. MT58 around IAI47_13675

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
2,895,887	+				-0.3
2,895,887	+				-0.2
2,895,913	+				-0.7
2,895,913	+				+0.4
2,895,913	+				+1.4
2,895,914	-				-2.9
2,895,914	-				+1.5
2,895,914	-				+0.9
2,895,914	-				+0.2
2,895,918	+				-0.8
2,895,918	+				+0.2
2,895,918	+				-0.7
2,895,918	+				+0.2
2,895,918	+				+0.9
2,895,918	+				-0.1
2,895,918	+				+0.4
2,895,918	+				+0.1
2,895,918	+				-0.7
2,895,918	+				+3.1
2,895,918	+				+0.3
2,895,918	+				-0.8
2,895,918	+				+0.7
2,895,918	+				+0.7
2,895,918	+				-0.8
2,895,918	+				-0.2
2,895,918	+				-0.3
2,895,918	+				+2.2
2,895,918	+				-0.1
2,895,918	+				-0.1
2,895,918	+				+0.5
2,895,918	+				-1.2
2,895,918	+				+0.5
2,895,918	+				+2.5
2,895,918	+				+0.8
2,895,918	+				+0.3
2,895,919	-				-0.1
2,895,919	-				-0.1
2,895,919	-				+0.9
2,895,919	-				-0.5
2,895,919	-				+0.7
2,895,919	-				+1.1
2,895,919	-				+0.0
2,895,919	-				+1.3
2,895,919	-				+0.6
2,895,919	-				+0.7
2,895,919	-				+1.3
2,895,919	-				-0.7
2,895,919	-				-0.1
2,895,919	-				+0.4
2,895,919	-				-0.1
2,895,919	-				+0.8
2,895,919	-				-0.0
2,895,919	-				-0.1
2,895,919	-				-0.0
2,895,919	-				+1.0
2,895,919	-				+0.3
2,895,919	-				-0.3
2,895,919	-				+0.6
2,895,919	-				-1.3
2,895,920	+				-1.9
2,895,921	-				-0.1
2,895,921	-				+0.1
2,895,921	-				+0.1
2,895,921	-				+2.3
2,895,921	-				+0.6
2,895,921	-				+0.0
2,895,949	+				-1.7
2,895,949	+				-0.4
2,895,949	+				+0.1
2,895,949	+				-0.2
2,895,950	-				+0.1
2,895,950	-				+0.8
2,895,953	+				-1.2
2,895,953	+				+0.8
2,895,953	+				-0.2
2,895,953	+				-0.7
2,895,953	+				-1.7
2,895,953	+				+0.4
2,895,954	-				-0.3
2,895,954	-				+0.9
2,895,954	-				+2.4
2,895,957	+				+0.0
2,895,957	+				+0.2
2,895,957	+				-0.7
2,895,958	-				+0.4
2,895,958	-				-0.4
2,895,958	-				-1.2
2,895,958	-				-0.9
2,895,958	-				-0.1
2,895,999	+				+1.1
2,895,999	+				+0.3
2,896,000	-				+0.5
2,896,000	-				-0.4
2,896,000	-				+0.1
2,896,058	-				-0.3
2,896,122	+				+1.7
2,896,123	-				-0.4
2,896,123	-				+0.0
2,896,173	+				+0.3
2,896,173	+				-0.1
2,896,174	-				+0.3
2,896,174	-				+0.1
2,896,174	-				+0.9
2,896,441	+				+1.6
2,896,441	+				-1.7
2,896,442	-				+1.3
2,896,442	-				-0.9
2,896,473	-				-0.0
2,896,473	-				-0.4
2,896,473	-				-0.1
2,896,473	-				-1.2
2,896,473	-				+0.9
2,896,473	-				-1.4
2,896,473	-				+0.2
2,896,544	+		IAI47_13665	0.88	-1.1
2,896,557	+				-0.4
2,896,557	+				+0.7
2,896,558	-				-0.4
2,896,558	-				+0.7
2,896,558	-				-0.7
2,896,558	-				+0.9
2,896,558	-				-0.5
2,896,558	-				+0.9
2,896,558	-				-0.7
2,896,558	-				+0.4
2,896,712	-				-1.1
2,896,717	-				-1.2
2,896,717	-				+0.1
2,896,750	-				+0.1
2,896,750	-				-0.5
2,896,750	-				-0.7
2,896,750	-				+1.4
2,896,751	+				-0.7
2,896,751	+				+1.4
2,896,752	-				+0.9
2,896,752	-				-0.4
2,896,752	-				-1.3
2,896,752	-				-0.3
2,896,752	-				+2.2
2,896,752	-				-1.0
2,896,752	-				-0.7
2,896,752	-				-1.1
2,896,752	-				-1.3
2,896,754	+				+0.6
2,896,755	-				-0.1
2,896,782	+				-1.4
2,896,783	-				+2.5
2,896,783	-				-0.9
2,896,809	-				-0.2
2,896,809	-				-1.1
2,896,809	-				+0.9
2,896,809	-				-0.6
2,896,842	+				+2.2
2,896,843	-				+0.8
2,896,843	-				-2.7
2,896,843	-				+0.2
2,896,866	-				+0.7
2,896,896	+				-0.4
2,896,897	-				-1.0
2,897,039	-		IAI47_13675	0.22	-0.1
2,897,048	+		IAI47_13675	0.23	-0.5
2,897,049	-		IAI47_13675	0.23	-0.9
2,897,049	-		IAI47_13675	0.23	+2.5
2,897,051	+		IAI47_13675	0.24	+0.1
2,897,052	-		IAI47_13675	0.24	-0.7
2,897,052	-		IAI47_13675	0.24	-2.6
2,897,052	-		IAI47_13675	0.24	-0.4
2,897,054	+		IAI47_13675	0.24	+0.2
2,897,054	+		IAI47_13675	0.24	+0.9
2,897,084	+		IAI47_13675	0.28	+0.9
2,897,084	+		IAI47_13675	0.28	-1.2
2,897,084	+		IAI47_13675	0.28	-0.1
2,897,085	-		IAI47_13675	0.28	-0.1
2,897,105	+		IAI47_13675	0.30	-0.1
2,897,106	-		IAI47_13675	0.30	+0.0
2,897,106	-		IAI47_13675	0.30	+0.9
2,897,123	+		IAI47_13675	0.33	+0.6
2,897,123	+		IAI47_13675	0.33	-0.0
2,897,124	-		IAI47_13675	0.33	-1.7
2,897,124	-		IAI47_13675	0.33	-0.7
2,897,180	+		IAI47_13675	0.40	-0.4
2,897,180	+		IAI47_13675	0.40	+1.7
2,897,180	+		IAI47_13675	0.40	-1.9
2,897,180	+		IAI47_13675	0.40	+0.3
2,897,181	-		IAI47_13675	0.40	-0.8
2,897,181	-		IAI47_13675	0.40	+0.6
2,897,219	+		IAI47_13675	0.45	-0.4
2,897,219	+		IAI47_13675	0.45	-1.9
2,897,219	+		IAI47_13675	0.45	-1.3
2,897,220	-		IAI47_13675	0.45	+0.9
2,897,299	-		IAI47_13675	0.55	-0.1
2,897,375	+		IAI47_13675	0.64	-1.8
2,897,375	+		IAI47_13675	0.64	-0.7
2,897,414	+		IAI47_13675	0.69	+0.1
2,897,414	+		IAI47_13675	0.69	-0.7
2,897,451	+		IAI47_13675	0.74	+1.2
2,897,451	+		IAI47_13675	0.74	+0.9
2,897,451	+		IAI47_13675	0.74	-0.1
2,897,451	+		IAI47_13675	0.74	+0.7
2,897,451	+		IAI47_13675	0.74	+0.1
2,897,451	+		IAI47_13675	0.74	-1.2
2,897,452	-		IAI47_13675	0.74	+1.1
2,897,452	-		IAI47_13675	0.74	+0.4
2,897,452	-		IAI47_13675	0.74	-0.4
2,897,452	-		IAI47_13675	0.74	-0.6
2,897,452	-		IAI47_13675	0.74	+1.4
2,897,511	+		IAI47_13675	0.81	+0.7
2,897,511	+		IAI47_13675	0.81	-2.1
2,897,617	+				-1.0
2,897,650	-				-1.4
2,897,650	-				-1.3
2,897,650	-				-1.0
2,897,653	-				+0.9
2,897,653	-				-2.6
2,897,653	-				-0.1
2,897,669	+				-1.9
2,897,669	+				-1.9
2,897,670	-				-1.1
2,897,670	-				-1.7
2,897,670	-				+0.2
2,897,670	-				-2.3
2,897,672	+				-0.1
2,898,210	+				-2.6
2,898,211	-				-0.5
2,898,211	-				-0.3
2,898,211	-				-0.7
2,898,211	-				-0.1
2,898,218	-				-1.4
2,898,249	-				-1.5
2,898,249	-				-1.1
2,898,249	-				+0.4
2,898,255	-				-1.2
2,898,255	-				-1.0
2,898,596	+		IAI47_13685	0.27	-0.7