Strain Fitness in Pantoea sp. MT58 around IAI47_12915

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
2,731,237	-				+0.8
2,731,237	-				-1.9
2,731,316	+		IAI47_12915	0.11	-1.7
2,731,316	+		IAI47_12915	0.11	-1.1
2,731,316	+		IAI47_12915	0.11	-3.6
2,731,316	+		IAI47_12915	0.11	-2.6
2,731,316	+		IAI47_12915	0.11	-1.1
2,731,317	-		IAI47_12915	0.11	-3.0
2,731,317	-		IAI47_12915	0.11	-4.5
2,731,317	-		IAI47_12915	0.11	-3.0
2,731,317	-		IAI47_12915	0.11	-2.8
2,731,371	+		IAI47_12915	0.22	-3.1
2,731,371	+		IAI47_12915	0.22	-1.5
2,731,371	+		IAI47_12915	0.22	-2.5
2,731,372	-		IAI47_12915	0.22	-2.1
2,731,372	-		IAI47_12915	0.22	-4.0
2,731,372	-		IAI47_12915	0.22	-0.7
2,731,372	-		IAI47_12915	0.22	-3.8
2,731,372	-		IAI47_12915	0.22	-3.2
2,731,372	-		IAI47_12915	0.22	-0.7
2,731,377	-		IAI47_12915	0.23	-3.0
2,731,386	+		IAI47_12915	0.25	-3.4
2,731,386	+		IAI47_12915	0.25	-1.7
2,731,386	+		IAI47_12915	0.25	-1.7
2,731,387	-		IAI47_12915	0.25	-1.9
2,731,387	-		IAI47_12915	0.25	-2.1
2,731,394	-		IAI47_12915	0.27	-1.7
2,731,412	+		IAI47_12915	0.31	-1.4
2,731,515	+		IAI47_12915	0.51	-1.9
2,731,516	-		IAI47_12915	0.52	-1.5
2,731,516	-		IAI47_12915	0.52	-2.8
2,731,529	-		IAI47_12915	0.54	-2.1
2,731,535	-		IAI47_12915	0.55	-2.7
2,731,550	+		IAI47_12915	0.58	-0.1
2,731,551	-		IAI47_12915	0.59	-2.3
2,731,572	+		IAI47_12915	0.63	-1.7
2,731,573	-		IAI47_12915	0.63	-1.5
2,731,574	+		IAI47_12915	0.63	-0.1
2,731,574	+		IAI47_12915	0.63	-4.6
2,731,574	+		IAI47_12915	0.63	-4.8
2,731,574	+		IAI47_12915	0.63	-0.1
2,731,574	+		IAI47_12915	0.63	-2.7
2,731,575	-		IAI47_12915	0.63	-4.7
2,731,584	+		IAI47_12915	0.65	-1.9
2,731,585	-		IAI47_12915	0.65	-3.5
2,731,585	-		IAI47_12915	0.65	-4.0
2,731,585	-		IAI47_12915	0.65	-1.7
2,731,585	-		IAI47_12915	0.65	-2.1
2,731,629	+		IAI47_12915	0.74	-3.8
2,731,630	-		IAI47_12915	0.75	-1.5
2,731,637	-		IAI47_12915	0.76	-0.1
2,731,637	-		IAI47_12915	0.76	-0.1
2,731,661	-		IAI47_12915	0.81	-0.1
2,731,661	-		IAI47_12915	0.81	-1.7
2,731,750	+				-1.9
2,731,750	+				-2.3
2,731,756	+				-2.1
2,731,756	+				-1.5
2,731,756	+				-0.7
2,731,757	-				-2.7
2,731,757	-				-2.9
2,731,757	-				-1.5
2,731,759	+				-2.5
2,731,759	+				-2.1
2,731,759	+				+0.9
2,731,759	+				-1.1
2,731,760	-				-3.0
2,731,760	-				-2.7
2,731,760	-				-1.1
2,731,771	+				-3.4
2,731,772	-				-0.9
2,731,772	-				+0.3
2,731,772	-				-0.0
2,731,786	-				+0.1
2,731,837	+				-2.3
2,731,837	+				-2.3
2,731,838	-				+0.5
2,731,838	-				+0.3
2,731,862	-				-1.6
2,731,876	+				-3.1
2,731,876	+				-2.5
2,731,876	+				+0.9
2,731,877	-				+0.9
2,731,908	+				-1.7
2,731,923	-				-1.7
2,731,932	+				-2.5
2,731,933	-				+2.2
2,731,991	+				-2.5
2,732,063	-				-1.6
2,732,063	-				+2.2
2,732,070	+				-1.6
2,732,071	-				+0.9
2,732,081	-				-0.4
2,732,081	-				+0.9
2,732,089	-				+0.5
2,732,185	+				-0.5
2,732,186	-				+0.1
2,732,186	-				+0.2
2,732,204	+				+0.2
2,732,205	-				-0.6
2,732,235	-				-1.9
2,732,235	-				-0.3
2,732,247	+				+0.9
2,732,247	+				+0.1
2,732,247	+				+2.7
2,732,247	+				+1.2
2,732,247	+				-0.7
2,732,247	+				+0.1
2,732,248	-				+0.3
2,732,248	-				-1.4
2,732,248	-				-0.6
2,732,248	-				-0.4
2,732,248	-				-0.5
2,732,296	+				-0.7
2,732,296	+				-1.1
2,732,296	+				-1.6
2,732,296	+				-1.8
2,732,296	+				-1.7
2,732,297	-				-0.9
2,732,297	-				-1.5
2,732,297	-				-1.1
2,732,297	-				-1.9
2,732,297	-				+1.4
2,732,297	-				+0.3
2,732,301	+				-0.0
2,732,333	-				-0.9
2,732,333	-				+0.1
2,732,345	+				-0.7
2,732,506	+		IAI47_12920	0.24	-0.7
2,732,507	-		IAI47_12920	0.24	+0.9
2,732,507	-		IAI47_12920	0.24	-1.1
2,732,602	+		IAI47_12920	0.34	-1.9
2,732,602	+		IAI47_12920	0.34	-0.7
2,732,603	-		IAI47_12920	0.34	+0.9
2,732,631	-		IAI47_12920	0.37	-0.4
2,732,705	+		IAI47_12920	0.44	-1.9
2,732,706	-		IAI47_12920	0.44	-0.1