Strain Fitness in Pantoea sp. MT58 around IAI47_09145

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,927,187	+		IAI47_09135	0.17	-0.1
1,927,187	+		IAI47_09135	0.17	+0.2
1,927,187	+		IAI47_09135	0.17	+0.2
1,927,188	-		IAI47_09135	0.17	-1.1
1,927,188	-		IAI47_09135	0.17	+0.7
1,927,191	+		IAI47_09135	0.18	+0.9
1,927,191	+		IAI47_09135	0.18	-0.4
1,927,191	+		IAI47_09135	0.18	-1.1
1,927,191	+		IAI47_09135	0.18	-1.1
1,927,192	-		IAI47_09135	0.18	-0.0
1,927,192	-		IAI47_09135	0.18	+0.6
1,927,192	-		IAI47_09135	0.18	-1.7
1,927,192	-		IAI47_09135	0.18	-0.7
1,927,192	-		IAI47_09135	0.18	+0.5
1,927,192	-		IAI47_09135	0.18	-0.3
1,927,192	-		IAI47_09135	0.18	-0.6
1,927,192	-		IAI47_09135	0.18	-1.5
1,927,192	-		IAI47_09135	0.18	+1.9
1,927,192	-		IAI47_09135	0.18	+1.4
1,927,195	+		IAI47_09135	0.19	-1.3
1,927,196	-		IAI47_09135	0.19	-0.4
1,927,196	-		IAI47_09135	0.19	-0.6
1,927,196	-		IAI47_09135	0.19	+0.7
1,927,214	+		IAI47_09135	0.24	-0.6
1,927,214	+		IAI47_09135	0.24	+0.0
1,927,214	+		IAI47_09135	0.24	+0.2
1,927,214	+		IAI47_09135	0.24	+0.3
1,927,214	+		IAI47_09135	0.24	+2.1
1,927,215	-		IAI47_09135	0.24	-0.1
1,927,215	-		IAI47_09135	0.24	+0.2
1,927,215	-		IAI47_09135	0.24	-0.5
1,927,215	-		IAI47_09135	0.24	+1.3
1,927,215	-		IAI47_09135	0.24	-0.1
1,927,215	-		IAI47_09135	0.24	+1.7
1,927,266	+		IAI47_09135	0.36	+0.6
1,927,284	+		IAI47_09135	0.40	-0.1
1,927,353	+		IAI47_09135	0.57	-0.5
1,927,353	+		IAI47_09135	0.57	+0.4
1,927,353	+		IAI47_09135	0.57	-0.6
1,927,354	-		IAI47_09135	0.57	+0.9
1,927,354	-		IAI47_09135	0.57	+1.7
1,927,354	-		IAI47_09135	0.57	+1.3
1,927,354	-		IAI47_09135	0.57	-1.0
1,927,371	+		IAI47_09135	0.61	+1.0
1,927,407	+		IAI47_09135	0.69	-0.6
1,927,407	+		IAI47_09135	0.69	+2.1
1,927,453	-		IAI47_09135	0.80	+0.9
1,927,516	+				-0.4
1,927,516	+				+1.3
1,927,521	+				-0.7
1,927,521	+				+1.7
1,927,558	+				+0.1
1,927,558	+				-0.4
1,927,558	+				+2.1
1,927,558	+				-0.4
1,927,559	-				+0.9
1,927,559	-				-0.7
1,927,559	-				+1.9
1,927,565	+				-1.0
1,928,194	-				+0.7
1,928,194	-				+3.2
1,928,194	-				-0.2
1,928,194	-				+0.7
1,928,194	-				-0.7
1,928,194	-				+0.9
1,928,201	+				-0.7
1,928,201	+				-1.7
1,928,201	+				-1.6
1,928,201	+				-0.7
1,928,201	+				-0.1
1,928,201	+				+0.0
1,928,202	-				+0.3
1,928,202	-				+0.9
1,928,202	-				+0.1
1,928,202	-				-1.7
1,928,202	-				-0.1
1,928,202	-				-0.1
1,928,202	-				-0.4
1,928,202	-				-0.7
1,928,203	+				-0.1
1,928,203	+				+0.9
1,928,203	+				-0.8
1,928,203	+				-0.9
1,928,203	+				-0.4
1,928,203	+				-0.6
1,928,203	+				+0.9
1,928,204	-				+0.0
1,928,204	-				+0.4
1,928,204	-				+0.6
1,928,204	-				+1.1
1,928,204	-				+0.9
1,928,204	-				+2.2
1,928,219	-				+1.0
1,928,219	-				+0.8
1,928,219	-				-1.0
1,928,219	-				-0.5
1,928,219	-				-0.6
1,928,219	-				+1.1
1,928,219	-				-0.5
1,928,223	-				-0.3
1,928,266	-		IAI47_09145	0.11	+0.4
1,928,319	+		IAI47_09145	0.18	-1.1
1,928,320	-		IAI47_09145	0.18	+0.1
1,928,347	-		IAI47_09145	0.22	+0.7
1,928,391	-		IAI47_09145	0.28	+1.3
1,928,495	+		IAI47_09145	0.42	-1.1
1,928,496	-		IAI47_09145	0.42	-0.3
1,928,623	+		IAI47_09145	0.59	+1.0
1,928,623	+		IAI47_09145	0.59	-1.6
1,928,624	-		IAI47_09145	0.59	+0.7
1,928,624	-		IAI47_09145	0.59	+0.8
1,928,624	-		IAI47_09145	0.59	+0.4
1,928,624	-		IAI47_09145	0.59	+0.4
1,928,648	+		IAI47_09145	0.63	-1.2
1,928,648	+		IAI47_09145	0.63	-1.8
1,928,649	-		IAI47_09145	0.63	+0.3
1,928,649	-		IAI47_09145	0.63	+1.1
1,928,721	-		IAI47_09145	0.73	+2.0
1,928,721	-		IAI47_09145	0.73	+1.3
1,928,721	-		IAI47_09145	0.73	-0.3
1,928,721	-		IAI47_09145	0.73	+0.0
1,928,721	-		IAI47_09145	0.73	+0.9
1,928,721	-		IAI47_09145	0.73	+0.5
1,928,721	-		IAI47_09145	0.73	-0.8
1,928,858	+				-1.5
1,928,858	+				-1.0
1,928,858	+				-1.1
1,928,859	-				-1.5
1,928,859	-				-0.4
1,928,859	-				-2.8
1,928,859	-				-0.1
1,928,897	-				+1.7
1,928,899	-				+0.7
1,928,915	+				-1.0
1,928,916	-				+0.3
1,928,916	-				+1.7
1,928,923	+				+1.3
1,928,923	+				-0.7
1,928,923	+				-2.3
1,928,924	-				-0.4
1,928,924	-				-0.1
1,928,924	-				-0.1
1,928,924	-				+1.9
1,928,924	-				-1.5
1,928,924	-				-0.7
1,928,924	-				-0.1
1,928,924	-				-0.1
1,928,924	-				-0.6
1,928,924	-				+0.3
1,928,924	-				-0.9
1,928,947	-				+0.3
1,928,964	+				-0.9
1,928,965	-				+0.1
1,928,965	-				+2.2
1,929,001	+		IAI47_09150	0.12	-0.7
1,929,001	+		IAI47_09150	0.12	+2.3
1,929,001	+		IAI47_09150	0.12	-0.0
1,929,014	+		IAI47_09150	0.16	+0.9
1,929,014	+		IAI47_09150	0.16	-0.7
1,929,015	-		IAI47_09150	0.16	+0.4
1,929,021	+		IAI47_09150	0.17	+0.3
1,929,021	+		IAI47_09150	0.17	+0.1
1,929,083	+		IAI47_09150	0.32	-0.0
1,929,083	+		IAI47_09150	0.32	-2.7
1,929,083	+		IAI47_09150	0.32	+0.9
1,929,084	-		IAI47_09150	0.32	+0.3
1,929,089	+		IAI47_09150	0.34	+0.1
1,929,089	+		IAI47_09150	0.34	-0.6
1,929,089	+		IAI47_09150	0.34	-0.4
1,929,089	+		IAI47_09150	0.34	+0.3
1,929,089	+		IAI47_09150	0.34	+1.3
1,929,089	+		IAI47_09150	0.34	+0.0
1,929,090	-		IAI47_09150	0.34	+1.6
1,929,090	-		IAI47_09150	0.34	-0.7
1,929,090	-		IAI47_09150	0.34	-0.4
1,929,090	-		IAI47_09150	0.34	-1.0
1,929,142	+		IAI47_09150	0.46	+0.6
1,929,142	+		IAI47_09150	0.46	-1.3
1,929,142	+		IAI47_09150	0.46	+0.9
1,929,142	+		IAI47_09150	0.46	-0.1
1,929,142	+		IAI47_09150	0.46	+1.0
1,929,142	+		IAI47_09150	0.46	-0.0
1,929,142	+		IAI47_09150	0.46	+0.3
1,929,143	-		IAI47_09150	0.47	+0.9
1,929,143	-		IAI47_09150	0.47	+0.6
1,929,143	-		IAI47_09150	0.47	-0.0
1,929,143	-		IAI47_09150	0.47	-0.6
1,929,143	-		IAI47_09150	0.47	+0.5
1,929,143	-		IAI47_09150	0.47	+0.4
1,929,180	+		IAI47_09150	0.55	-0.1
1,929,180	+		IAI47_09150	0.55	+0.7
1,929,181	-		IAI47_09150	0.56	-4.1
1,929,210	-		IAI47_09150	0.63	+0.1
1,929,221	+		IAI47_09150	0.65	-0.7
1,929,221	+		IAI47_09150	0.65	+0.9
1,929,221	+		IAI47_09150	0.65	+0.3
1,929,221	+		IAI47_09150	0.65	+0.6
1,929,221	+		IAI47_09150	0.65	-0.5
1,929,222	-		IAI47_09150	0.65	+0.9
1,929,222	-		IAI47_09150	0.65	+0.0
1,929,222	-		IAI47_09150	0.65	+0.3
1,929,224	+		IAI47_09150	0.66	-1.5
1,929,224	+		IAI47_09150	0.66	+0.4
1,929,224	+		IAI47_09150	0.66	+0.8
1,929,224	+		IAI47_09150	0.66	+0.9
1,929,225	-		IAI47_09150	0.66	-0.0
1,929,225	-		IAI47_09150	0.66	+0.4
1,929,225	-		IAI47_09150	0.66	-0.5
1,929,225	-		IAI47_09150	0.66	-0.2
1,929,415	+				+0.1
1,929,415	+				+0.5
1,929,415	+				+0.6
1,929,415	+				-1.1
1,929,415	+				+0.3
1,929,416	-				-0.3
1,929,424	+				+0.2
1,929,424	+				+0.7
1,929,425	-				+0.3
1,929,425	-				+0.7
1,929,591	+				-0.5
1,929,602	+				+0.3
1,929,602	+				-0.7
1,929,603	-				+1.0
1,929,603	-				+0.3
1,929,804	+		IAI47_09155	0.30	+1.2
1,929,804	+		IAI47_09155	0.30	+0.4
1,929,804	+		IAI47_09155	0.30	-1.3
1,929,804	+		IAI47_09155	0.30	-1.5
1,929,805	-		IAI47_09155	0.30	-0.5
1,929,805	-		IAI47_09155	0.30	+1.6
1,929,805	-		IAI47_09155	0.30	+0.2
1,929,805	-		IAI47_09155	0.30	+0.2
1,929,808	+		IAI47_09155	0.30	-0.5
1,929,808	+		IAI47_09155	0.30	-1.7
1,929,808	+		IAI47_09155	0.30	+0.9
1,929,808	+		IAI47_09155	0.30	-0.6
1,929,808	+		IAI47_09155	0.30	+0.3
1,929,808	+		IAI47_09155	0.30	+0.9
1,929,808	+		IAI47_09155	0.30	+0.3
1,929,808	+		IAI47_09155	0.30	+0.9
1,929,808	+		IAI47_09155	0.30	+1.2
1,929,808	+		IAI47_09155	0.30	-0.0
1,929,808	+		IAI47_09155	0.30	+0.6
1,929,808	+		IAI47_09155	0.30	-0.7
1,929,809	-		IAI47_09155	0.30	+0.9
1,929,809	-		IAI47_09155	0.30	-0.6
1,929,809	-		IAI47_09155	0.30	+0.6
1,929,809	-		IAI47_09155	0.30	-0.9
1,929,809	-		IAI47_09155	0.30	+0.5
1,929,809	-		IAI47_09155	0.30	+0.6
1,929,809	-		IAI47_09155	0.30	+0.9
1,929,809	-		IAI47_09155	0.30	+0.3
1,929,809	-		IAI47_09155	0.30	+1.1
1,929,810	+		IAI47_09155	0.31	+0.4
1,929,810	+		IAI47_09155	0.31	+0.4
1,929,810	+		IAI47_09155	0.31	+1.4
1,929,810	+		IAI47_09155	0.31	-0.5
1,929,811	-		IAI47_09155	0.31	+2.4
1,929,864	+		IAI47_09155	0.39	+0.4
1,929,911	+		IAI47_09155	0.46	+0.6
1,929,911	+		IAI47_09155	0.46	+0.8
1,929,911	+		IAI47_09155	0.46	+1.7