Strain Fitness in Pantoea sp. MT58 around IAI47_07895

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,672,747	+				-0.3
1,672,747	+				+0.5
1,672,752	+				-0.5
1,672,752	+				-0.1
1,672,753	-				+0.9
1,672,753	-				+0.1
1,672,753	-				-1.1
1,672,753	-				+1.4
1,672,767	+				+0.9
1,672,768	-				+0.5
1,672,795	-				-1.1
1,672,845	+				+1.4
1,672,846	-				-1.0
1,672,866	+				+0.9
1,672,866	+				-0.6
1,672,866	+				-0.2
1,672,866	+				-0.4
1,672,866	+				+1.4
1,672,866	+				+1.1
1,672,866	+				+0.1
1,672,867	-				-0.6
1,672,867	-				+0.5
1,672,867	-				-0.6
1,672,867	-				+0.3
1,672,867	-				-1.0
1,672,960	-		IAI47_07890	0.22	+0.3
1,672,969	+		IAI47_07890	0.23	-1.6
1,672,970	-		IAI47_07890	0.23	-1.1
1,673,067	-		IAI47_07890	0.35	+0.2
1,673,088	+		IAI47_07890	0.38	+0.0
1,673,113	+		IAI47_07890	0.41	+1.4
1,673,113	+		IAI47_07890	0.41	-0.7
1,673,113	+		IAI47_07890	0.41	-0.1
1,673,114	-		IAI47_07890	0.41	-1.3
1,673,114	-		IAI47_07890	0.41	+0.7
1,673,114	-				-0.6
1,673,114	-		IAI47_07890	0.41	+1.3
1,673,114	-		IAI47_07890	0.41	-0.7
1,673,114	-		IAI47_07890	0.41	+1.1
1,673,190	-		IAI47_07890	0.51	+0.5
1,673,519	+				+0.5
1,673,519	+				+0.9
1,673,520	-				-1.1
1,673,520	-				-0.1
1,673,524	+				-1.8
1,673,525	-				+0.2
1,673,560	+				-0.1
1,673,560	+				+0.6
1,673,561	-				+0.4
1,673,561	-				-1.1
1,673,591	+				+0.9
1,673,591	+				+1.3
1,673,591	+				+0.9
1,673,592	-				-0.5
1,673,592	-				-0.1
1,673,592	-				+0.3
1,673,616	+				+0.4
1,673,616	+				+1.9
1,673,616	+				+0.1
1,673,618	+				-0.3
1,673,618	+				+0.0
1,673,618	+				+0.7
1,673,619	-				-1.7
1,673,657	+				-2.3
1,673,657	+				-0.6
1,673,658	-				-0.6
1,673,676	+				-0.1
1,673,677	-				+1.5
1,673,731	+				+0.4
1,673,731	+				+0.0
1,673,739	+				+0.0
1,673,739	+				-1.0
1,673,739	+				-0.1
1,673,739	+				+0.8
1,673,739	+				-0.6
1,673,740	-				+1.4
1,673,740	-				+1.3
1,673,740	-				-0.4
1,673,740	-				-0.3
1,673,740	-				-0.7
1,673,832	+		IAI47_07895	0.14	-1.5
1,673,842	+		IAI47_07895	0.15	-2.6
1,673,878	+		IAI47_07895	0.21	-0.4
1,673,903	+		IAI47_07895	0.24	-2.1
1,673,903	+		IAI47_07895	0.24	-0.1
1,673,903	+		IAI47_07895	0.24	-1.3
1,673,904	-		IAI47_07895	0.24	+1.4
1,673,904	-		IAI47_07895	0.24	-2.0
1,673,966	-		IAI47_07895	0.34	-0.2
1,673,980	+		IAI47_07895	0.36	-1.5
1,674,001	+		IAI47_07895	0.39	-0.6
1,674,001	+		IAI47_07895	0.39	-1.7
1,674,001	+		IAI47_07895	0.39	-0.7
1,674,001	+		IAI47_07895	0.39	-0.6
1,674,001	+		IAI47_07895	0.39	-2.7
1,674,001	+		IAI47_07895	0.39	+1.1
1,674,001	+		IAI47_07895	0.39	+0.9
1,674,002	-		IAI47_07895	0.39	-1.5
1,674,002	-		IAI47_07895	0.39	-0.4
1,674,002	-		IAI47_07895	0.39	-2.0
1,674,002	-		IAI47_07895	0.39	-0.8
1,674,002	-		IAI47_07895	0.39	-0.7
1,674,002	-		IAI47_07895	0.39	-2.5
1,674,002	-		IAI47_07895	0.39	-0.7
1,674,043	+		IAI47_07895	0.45	-2.0
1,674,070	+		IAI47_07895	0.49	+1.6
1,674,070	+		IAI47_07895	0.49	-1.3
1,674,070	+		IAI47_07895	0.49	-3.1
1,674,070	+		IAI47_07895	0.49	-0.7
1,674,070	+		IAI47_07895	0.49	-1.5
1,674,071	-		IAI47_07895	0.49	-0.6
1,674,071	-		IAI47_07895	0.49	+0.0
1,674,093	+		IAI47_07895	0.52	-0.5
1,674,094	-		IAI47_07895	0.53	-0.9
1,674,094	-		IAI47_07895	0.53	+1.2
1,674,094	-		IAI47_07895	0.53	-1.1
1,674,129	+		IAI47_07895	0.58	+0.3
1,674,129	+		IAI47_07895	0.58	-2.3
1,674,188	+		IAI47_07895	0.66	+0.2
1,674,188	+		IAI47_07895	0.66	-0.1
1,674,188	+		IAI47_07895	0.66	-1.4
1,674,188	+		IAI47_07895	0.66	-0.8
1,674,188	+		IAI47_07895	0.66	-1.3
1,674,188	+		IAI47_07895	0.66	+0.9
1,674,188	+		IAI47_07895	0.66	-1.8
1,674,189	-		IAI47_07895	0.67	-0.5
1,674,189	-		IAI47_07895	0.67	-2.0
1,674,189	-		IAI47_07895	0.67	+0.9
1,674,219	+		IAI47_07895	0.71	-0.7
1,674,219	+		IAI47_07895	0.71	-1.3
1,674,219	+		IAI47_07895	0.71	-1.1
1,674,220	-		IAI47_07895	0.71	-0.4
1,674,220	-		IAI47_07895	0.71	-2.5
1,674,220	-		IAI47_07895	0.71	-0.0
1,674,220	-		IAI47_07895	0.71	-1.5
1,674,249	+		IAI47_07895	0.75	-1.0
1,674,265	+		IAI47_07895	0.78	-2.5
1,674,265	+		IAI47_07895	0.78	-0.9
1,674,334	+		IAI47_07895	0.88	-0.5
1,674,334	+		IAI47_07895	0.88	-1.7
1,674,335	-		IAI47_07895	0.88	+1.4
1,674,335	-		IAI47_07895	0.88	-1.1
1,674,335	-		IAI47_07895	0.88	-1.0
1,674,335	-		IAI47_07895	0.88	+0.5
1,674,421	-				-1.3
1,674,431	+				-1.1
1,674,432	-				-0.2
1,674,434	+				-0.7
1,674,434	+				-1.8
1,674,437	+				-0.7
1,674,437	+				+0.9
1,674,437	+				-1.5
1,674,437	+				+0.3
1,674,438	-				+0.5
1,674,449	-				-0.3
1,674,449	-				+1.7
1,674,456	+				-1.1
1,674,456	+				+0.4
1,674,456	+				+0.5
1,674,456	+				-1.0
1,674,457	-				+0.2
1,674,492	-				+0.0
1,674,501	-				+0.0
1,674,541	+				-2.1
1,674,559	+				+0.3
1,674,599	+				-1.7
1,674,599	+				+0.7
1,674,600	-				+0.0
1,674,600	-				+0.9
1,674,603	+				-0.8
1,674,604	-				-0.2
1,674,604	-				+1.1
1,674,626	+				-0.5
1,674,635	+				-0.8
1,674,635	+				+0.9
1,674,635	+				-2.0
1,674,635	+				-0.5
1,674,635	+				-0.9
1,674,636	-				-1.1
1,674,636	-				+0.9
1,674,641	-				+1.4
1,674,641	-				+0.7
1,674,641	-				+1.3
1,674,641	-				+2.3
1,674,645	+				-1.0
1,674,645	+				+0.5
1,674,645	+				-0.3
1,674,645	+				+1.0
1,674,645	+				+0.0
1,674,647	+				+1.9
1,674,647	+				-0.4
1,674,648	-				-1.6
1,674,648	-				-2.5
1,674,709	+				-0.0
1,674,710	-				+0.4
1,674,745	-				-1.2
1,674,861	+				-1.5
1,674,861	+				-0.7
1,674,862	-				-0.3
1,674,863	+				-1.5
1,674,863	+				-0.1
1,674,863	+				+0.8
1,674,863	+				+0.9
1,674,863	+				+0.2
1,674,863	+				+1.9
1,674,863	+				+1.3
1,674,864	-				-1.0
1,674,864	-				+0.2
1,674,864	-				-1.5
1,674,864	-				-0.6
1,674,930	+				-0.4
1,674,956	+				+0.1
1,674,957	-				+0.3
1,675,011	+				+0.5
1,675,011	+				-0.7
1,675,012	-				-1.0
1,675,021	+				-0.5
1,675,021	+				+0.6
1,675,021	+				+0.7
1,675,021	+				+1.7
1,675,021	+				-0.3
1,675,022	-				+0.1
1,675,022	-				+0.6
1,675,022	-				-0.2
1,675,022	-				-0.1
1,675,022	-				+0.4
1,675,022	-				-0.9
1,675,022	-				+2.0
1,675,026	+				-0.2
1,675,026	+				-0.8
1,675,026	+				-1.3
1,675,026	+				-2.1
1,675,026	+				+0.2
1,675,026	+				-0.3
1,675,026	+				+1.1
1,675,026	+				-0.7
1,675,026	+				+0.9
1,675,026	+				+0.4
1,675,026	+				+1.6
1,675,026	+				+0.3
1,675,026	+				+0.3
1,675,027	-				+0.9
1,675,027	-				-1.5
1,675,027	-				+1.6
1,675,027	-				-0.8
1,675,027	-				+1.6
1,675,027	-				+1.0
1,675,027	-				+0.5
1,675,027	-				-1.3
1,675,027	-				+0.3
1,675,027	-				+0.7
1,675,027	-				-0.1
1,675,027	-				-1.1
1,675,027	-				+0.5
1,675,027	-				+0.1
1,675,027	-				-0.5
1,675,027	-				-0.4
1,675,027	-				-0.6
1,675,027	-				+0.9
1,675,027	-				+1.0
1,675,027	-				+0.5
1,675,027	-				+2.7
1,675,027	-				+0.6
1,675,027	-				+0.9
1,675,104	+		IAI47_07900	0.11	-0.6
1,675,105	-		IAI47_07900	0.11	-0.6
1,675,115	+		IAI47_07900	0.12	+0.2
1,675,115	+		IAI47_07900	0.12	-0.5
1,675,116	-		IAI47_07900	0.13	-0.1
1,675,116	-		IAI47_07900	0.13	+1.9
1,675,155	+		IAI47_07900	0.18	+0.9
1,675,156	-		IAI47_07900	0.18	-1.1
1,675,175	+		IAI47_07900	0.21	-0.4
1,675,176	-		IAI47_07900	0.21	+0.1
1,675,209	+		IAI47_07900	0.26	+0.5
1,675,209	+		IAI47_07900	0.26	-1.3
1,675,209	+		IAI47_07900	0.26	-2.5
1,675,252	+		IAI47_07900	0.32	+0.5
1,675,252	+		IAI47_07900	0.32	-0.6
1,675,252	+		IAI47_07900	0.32	+1.2
1,675,252	+		IAI47_07900	0.32	-0.4
1,675,253	-		IAI47_07900	0.32	+0.6
1,675,253	-		IAI47_07900	0.32	-0.7
1,675,253	-		IAI47_07900	0.32	+1.9
1,675,386	+		IAI47_07900	0.51	-0.7
1,675,386	+		IAI47_07900	0.51	+2.4
1,675,386	+		IAI47_07900	0.51	-0.7
1,675,387	-		IAI47_07900	0.51	-0.3