Strain Fitness in Pantoea sp. MT58 around IAI47_06235

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,266,858	+		IAI47_06225	0.31	+0.9
1,266,858	+		IAI47_06225	0.31	+0.9
1,266,858	+		IAI47_06225	0.31	-0.6
1,266,859	-		IAI47_06225	0.31	+1.3
1,266,859	-		IAI47_06225	0.31	+1.2
1,266,859	-		IAI47_06225	0.31	+1.5
1,266,859	-		IAI47_06225	0.31	-0.7
1,266,867	+		IAI47_06225	0.32	+0.9
1,266,868	-		IAI47_06225	0.32	+0.5
1,266,923	-		IAI47_06225	0.38	-1.1
1,266,935	+		IAI47_06225	0.39	+0.8
1,266,935	+		IAI47_06225	0.39	-0.0
1,266,935	+		IAI47_06225	0.39	+0.1
1,266,935	+		IAI47_06225	0.39	-0.6
1,266,935	+		IAI47_06225	0.39	+1.9
1,266,935	+		IAI47_06225	0.39	+0.2
1,266,935	+		IAI47_06225	0.39	+1.6
1,266,936	-		IAI47_06225	0.39	+1.0
1,266,936	-		IAI47_06225	0.39	-0.1
1,266,951	+		IAI47_06225	0.41	+0.3
1,266,951	+		IAI47_06225	0.41	+0.7
1,266,952	-		IAI47_06225	0.41	+0.1
1,266,952	-		IAI47_06225	0.41	+0.3
1,266,989	+		IAI47_06225	0.45	+0.1
1,266,989	+		IAI47_06225	0.45	+0.3
1,266,990	-		IAI47_06225	0.45	-1.1
1,266,990	-		IAI47_06225	0.45	+0.8
1,266,990	-		IAI47_06225	0.45	+1.2
1,266,998	+		IAI47_06225	0.46	+0.5
1,266,998	+		IAI47_06225	0.46	+0.9
1,266,999	-		IAI47_06225	0.46	+1.1
1,266,999	-		IAI47_06225	0.46	+1.0
1,266,999	-		IAI47_06225	0.46	-0.4
1,267,087	+		IAI47_06225	0.56	-0.1
1,267,110	+		IAI47_06225	0.59	-0.7
1,267,110	+		IAI47_06225	0.59	-0.9
1,267,111	-		IAI47_06225	0.59	-0.5
1,267,111	-		IAI47_06225	0.59	+1.2
1,267,111	-		IAI47_06225	0.59	+1.0
1,267,111	-		IAI47_06225	0.59	+0.9
1,267,125	+		IAI47_06225	0.60	-0.6
1,267,235	+		IAI47_06225	0.72	-0.1
1,267,238	+		IAI47_06225	0.73	+0.1
1,267,238	+		IAI47_06225	0.73	+0.5
1,267,238	+		IAI47_06225	0.73	-0.4
1,267,253	+		IAI47_06225	0.74	-0.0
1,267,253	+		IAI47_06225	0.74	-0.9
1,267,254	-		IAI47_06225	0.75	-1.4
1,267,254	-		IAI47_06225	0.75	-0.5
1,267,254	-		IAI47_06225	0.75	-0.3
1,267,281	+		IAI47_06225	0.78	+0.9
1,267,281	+		IAI47_06225	0.78	-0.9
1,267,281	+		IAI47_06225	0.78	-0.9
1,267,281	+		IAI47_06225	0.78	+0.6
1,267,309	-		IAI47_06225	0.81	-0.8
1,267,360	+		IAI47_06225	0.86	+1.7
1,267,361	-		IAI47_06225	0.86	+0.3
1,267,379	+		IAI47_06225	0.88	-0.9
1,267,380	-		IAI47_06225	0.89	-1.7
1,267,450	+				-0.7
1,267,450	+				-0.3
1,267,450	+				+0.4
1,267,450	+				-1.1
1,267,451	-				-0.5
1,267,451	-				+0.5
1,267,451	-				-0.7
1,267,451	-				+1.9
1,267,469	+				+0.3
1,267,493	+				-0.6
1,267,493	+				+1.2
1,267,493	+				-0.6
1,267,493	+				-0.6
1,267,493	+				+0.6
1,267,493	+				+0.7
1,267,493	+				-0.1
1,267,493	+				+1.9
1,267,494	-				-1.1
1,267,494	-				-0.5
1,267,494	-				-2.7
1,267,494	-				-2.4
1,267,494	-				+0.9
1,267,494	-				+0.1
1,267,494	-				+0.3
1,267,494	-				+1.0
1,267,494	-				-0.3
1,267,495	+				+1.4
1,267,495	+				+0.1
1,267,495	+				+1.3
1,267,495	+				-1.0
1,267,495	+				+1.2
1,267,495	+				-0.3
1,267,495	+				+0.2
1,267,495	+				-0.2
1,267,495	+				+2.0
1,267,495	+				-0.7
1,267,495	+				-0.6
1,267,495	+				-0.5
1,267,495	+				-0.1
1,267,496	-				-0.4
1,267,496	-				-1.7
1,267,496	-				-0.9
1,267,496	-				+0.8
1,267,496	-				-0.1
1,267,496	-				+0.1
1,267,496	-				-0.3
1,267,496	-				+0.1
1,267,496	-				+0.6
1,267,496	-				-0.1
1,267,496	-				-0.6
1,267,496	-				+1.6
1,267,496	-				-0.6
1,267,499	+				-0.7
1,267,499	+				+0.5
1,267,499	+				-2.3
1,267,499	+				-0.8
1,267,499	+				-0.5
1,267,499	+				-1.1
1,267,500	-				-1.0
1,267,500	-				-0.3
1,267,500	-				-0.3
1,267,500	-				-0.5
1,267,500	-				-0.5
1,267,500	-				+1.4
1,267,500	-				+1.1
1,267,500	-				-0.8
1,267,500	-				+1.1
1,267,501	+				-0.0
1,267,501	+				-0.9
1,267,501	+				+0.2
1,267,501	+				-2.0
1,267,501	+				-0.7
1,267,502	-				+0.5
1,267,505	+				-1.1
1,267,505	+				-1.2
1,267,505	+				+0.9
1,267,505	+				-0.8
1,267,505	+				-0.0
1,267,506	-				+0.2
1,267,520	+				+0.2
1,267,520	+				-1.4
1,267,521	-				-1.8
1,267,521	-				-0.9
1,267,521	-				+1.6
1,267,548	+				-0.7
1,267,548	+				-0.3
1,267,548	+				-0.5
1,267,548	+				+0.1
1,267,549	-				+0.5
1,267,549	-				-0.3
1,267,562	+				-0.7
1,267,593	-				+1.4
1,267,593	-				+1.3
1,267,617	+		IAI47_06230	0.20	+1.9
1,267,617	+		IAI47_06230	0.20	+0.4
1,267,617	+		IAI47_06230	0.20	+0.5
1,267,617	+		IAI47_06230	0.20	-0.3
1,267,617	+		IAI47_06230	0.20	-1.2
1,267,617	+		IAI47_06230	0.20	-0.5
1,267,617	+		IAI47_06230	0.20	-1.1
1,267,618	-		IAI47_06230	0.20	-0.1
1,267,618	-		IAI47_06230	0.20	-0.7
1,267,618	-		IAI47_06230	0.20	-1.4
1,267,618	-		IAI47_06230	0.20	-0.9
1,267,618	-		IAI47_06230	0.20	-0.8
1,267,717	-		IAI47_06230	0.64	+0.1
1,267,717	-		IAI47_06230	0.64	+0.3
1,267,797	+				+2.5
1,267,831	+				+0.9
1,267,831	+				+0.1
1,267,831	+				-0.3
1,267,831	+				+1.1
1,267,878	+				-1.7
1,267,885	+				-1.6
1,267,899	-				-2.9
1,267,899	-				-2.7
1,268,067	+		IAI47_06235	0.19	-1.5
1,268,067	+		IAI47_06235	0.19	-1.9
1,268,124	+		IAI47_06235	0.24	-2.3
1,268,125	-		IAI47_06235	0.24	-2.9
1,268,125	-		IAI47_06235	0.24	-1.9
1,268,361	+		IAI47_06235	0.45	-2.9
1,268,361	+		IAI47_06235	0.45	-1.1
1,268,361	+		IAI47_06235	0.45	-1.1
1,268,361	+		IAI47_06235	0.45	-1.7
1,268,362	-		IAI47_06235	0.45	-1.5
1,268,388	+		IAI47_06235	0.47	-1.1
1,268,402	-		IAI47_06235	0.48	-0.7
1,268,403	+		IAI47_06235	0.48	-2.6
1,268,403	+		IAI47_06235	0.48	-1.5
1,268,493	+		IAI47_06235	0.56	-2.7
1,268,494	-		IAI47_06235	0.56	-2.3
1,268,543	+		IAI47_06235	0.61	-0.5
1,268,544	-		IAI47_06235	0.61	-2.1
1,268,586	-		IAI47_06235	0.64	-1.1
1,268,627	-		IAI47_06235	0.68	-2.3
1,268,627	-		IAI47_06235	0.68	-3.1
1,268,627	-		IAI47_06235	0.68	-2.7
1,268,641	-		IAI47_06235	0.69	-2.1
1,268,664	-		IAI47_06235	0.71	-2.1
1,268,685	+		IAI47_06235	0.73	-1.1
1,268,686	-		IAI47_06235	0.73	-1.9
1,268,720	+		IAI47_06235	0.76	-2.6
1,268,720	+		IAI47_06235	0.76	-2.7
1,268,721	-		IAI47_06235	0.76	-2.7
1,268,721	-		IAI47_06235	0.76	-4.3
1,268,803	+		IAI47_06235	0.84	-3.2
1,268,803	+		IAI47_06235	0.84	-0.7
1,268,804	-		IAI47_06235	0.84	+0.9
1,268,804	-		IAI47_06235	0.84	-2.1
1,268,804	-		IAI47_06235	0.84	-2.1
1,268,804	-		IAI47_06235	0.84	-0.7
1,268,804	-		IAI47_06235	0.84	-2.6
1,268,835	+		IAI47_06235	0.86	-3.4
1,268,881	+				-1.1
1,268,882	-				-1.9
1,268,948	+				+0.3
1,268,948	+				-1.9
1,268,986	+				+0.9
1,269,058	+				+0.4
1,269,100	+				+0.6
1,269,101	-				+0.9
1,269,101	-				+0.9
1,269,156	+				+0.1
1,269,156	+				+0.1
1,269,157	-				-1.1
1,269,157	-				-1.6
1,269,157	-				+0.3
1,269,164	+				-0.9
1,269,164	+				+0.4
1,269,164	+				+0.6
1,269,164	+				-0.0
1,269,164	+				+2.2
1,269,165	-				+0.9
1,269,165	-				-0.4
1,269,165	-				-2.8
1,269,223	+				+0.1
1,269,223	+				-0.0
1,269,248	+				+1.0
1,269,248	+				+0.1
1,269,248	+				-0.7
1,269,267	+				+1.2
1,269,285	-				-3.2
1,269,339	+				+0.6
1,269,351	+				+1.9
1,269,351	+				+0.9
1,269,352	-				-2.3
1,269,393	+				+0.5
1,269,394	-		IAI47_06240	0.10	+0.9
1,269,394	-		IAI47_06240	0.10	-0.7
1,269,395	+		IAI47_06240	0.10	+0.9
1,269,396	-		IAI47_06240	0.10	-1.4
1,269,685	+		IAI47_06240	0.39	+1.2
1,269,715	+		IAI47_06240	0.42	-0.7
1,269,715	+		IAI47_06240	0.42	+0.6
1,269,838	+		IAI47_06240	0.54	-1.1
1,269,838	+		IAI47_06240	0.54	-1.8
1,269,839	-		IAI47_06240	0.54	-1.4
1,269,839	-		IAI47_06240	0.54	-0.1
1,269,948	+		IAI47_06240	0.65	+0.1
1,269,948	+		IAI47_06240	0.65	+0.9
1,269,948	+		IAI47_06240	0.65	-1.3
1,269,948	+		IAI47_06240	0.65	-1.4
1,269,952	+		IAI47_06240	0.65	-0.6
1,269,952	+		IAI47_06240	0.65	-0.1
1,269,952	+		IAI47_06240	0.65	-1.7
1,269,952	+		IAI47_06240	0.65	-0.3
1,269,952	+		IAI47_06240	0.65	+0.7
1,269,952	+		IAI47_06240	0.65	-0.0
1,269,952	+		IAI47_06240	0.65	+0.3
1,269,953	-		IAI47_06240	0.65	+0.3
1,269,953	-		IAI47_06240	0.65	-3.0
1,269,953	-		IAI47_06240	0.65	-1.1
1,269,957	+		IAI47_06240	0.66	-0.9
1,269,958	-		IAI47_06240	0.66	-1.4
1,269,960	+		IAI47_06240	0.66	-0.7
1,269,960	+		IAI47_06240	0.66	+0.1
1,269,960	+		IAI47_06240	0.66	+0.4
1,269,976	-		IAI47_06240	0.68	-1.7