Strain Fitness in Pantoea sp. MT58 around IAI47_05120

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,082,284	-				-0.6
1,082,284	-				+0.3
1,082,284	-				-0.6
1,082,284	-				+0.1
1,082,284	-				+1.8
1,082,284	-				+0.5
1,082,284	-				+1.2
1,082,284	-				+2.5
1,082,330	+				-0.2
1,082,344	+				+0.9
1,082,344	+				-0.8
1,082,344	+				-0.7
1,082,345	-				+0.2
1,082,345	-				-1.0
1,082,358	+				-0.1
1,082,358	+				-0.1
1,082,358	+				-1.5
1,082,358	+				+1.0
1,082,359	-				-0.9
1,082,381	+				-0.6
1,082,396	+				-1.2
1,082,403	+				+1.9
1,082,421	+				+1.1
1,082,421	+				+1.1
1,082,421	+				-0.7
1,082,422	-				+1.1
1,082,422	-				-0.7
1,082,422	-				-2.6
1,082,427	-				+0.6
1,082,459	+				+0.0
1,082,459	+				+0.1
1,082,459	+				-1.0
1,082,459	+				-0.0
1,082,459	+				+0.9
1,082,460	-				+1.9
1,082,460	-				-0.3
1,082,460	-				+0.5
1,082,460	-				+0.5
1,082,460	-				+0.0
1,082,460	-				-0.1
1,082,523	+				+0.3
1,082,523	+				+0.6
1,082,523	+				-1.7
1,082,523	+				-0.6
1,082,523	+				-0.1
1,082,523	+				+0.3
1,082,524	-				+0.5
1,082,524	-				+0.6
1,082,524	-				-0.1
1,082,643	+		IAI47_05115	0.21	-0.0
1,082,643	+		IAI47_05115	0.21	+0.2
1,082,643	+		IAI47_05115	0.21	-1.6
1,082,643	+		IAI47_05115	0.21	+0.5
1,082,643	+		IAI47_05115	0.21	-0.7
1,082,643	+		IAI47_05115	0.21	-0.8
1,082,643	+		IAI47_05115	0.21	-0.6
1,082,644	-		IAI47_05115	0.21	-0.4
1,082,644	-		IAI47_05115	0.21	+1.5
1,082,644	-		IAI47_05115	0.21	-1.5
1,082,644	-		IAI47_05115	0.21	+0.4
1,082,645	+		IAI47_05115	0.21	-0.1
1,082,645	+		IAI47_05115	0.21	+1.5
1,082,645	+		IAI47_05115	0.21	-0.1
1,082,645	+		IAI47_05115	0.21	-0.0
1,082,645	+		IAI47_05115	0.21	-0.5
1,082,645	+		IAI47_05115	0.21	-0.2
1,082,645	+		IAI47_05115	0.21	+0.3
1,082,645	+		IAI47_05115	0.21	-0.8
1,082,645	+		IAI47_05115	0.21	+0.4
1,082,645	+		IAI47_05115	0.21	-0.3
1,082,645	+		IAI47_05115	0.21	+0.3
1,082,645	+		IAI47_05115	0.21	+2.5
1,082,645	+		IAI47_05115	0.21	-0.8
1,082,645	+		IAI47_05115	0.21	+0.5
1,082,646	-		IAI47_05115	0.21	-0.4
1,082,646	-		IAI47_05115	0.21	+0.2
1,082,646	-		IAI47_05115	0.21	-0.5
1,082,646	-		IAI47_05115	0.21	-0.4
1,082,646	-		IAI47_05115	0.21	+1.9
1,082,646	-		IAI47_05115	0.21	-0.5
1,082,646	-		IAI47_05115	0.21	-0.7
1,082,646	-		IAI47_05115	0.21	+2.0
1,082,647	+		IAI47_05115	0.22	-0.3
1,082,647	+		IAI47_05115	0.22	-0.1
1,082,647	+		IAI47_05115	0.22	+0.2
1,082,647	+		IAI47_05115	0.22	-1.1
1,082,647	+		IAI47_05115	0.22	-1.9
1,082,648	-		IAI47_05115	0.22	-0.2
1,082,648	-		IAI47_05115	0.22	+1.6
1,082,648	-		IAI47_05115	0.22	-0.1
1,082,669	+		IAI47_05115	0.24	+0.4
1,082,670	-		IAI47_05115	0.25	-0.5
1,082,670	-		IAI47_05115	0.25	+0.0
1,082,684	+		IAI47_05115	0.26	+0.4
1,082,684	+		IAI47_05115	0.26	+0.5
1,082,684	+		IAI47_05115	0.26	+3.8
1,082,684	+		IAI47_05115	0.26	+1.5
1,082,684	+		IAI47_05115	0.26	+0.5
1,082,684	+		IAI47_05115	0.26	+0.7
1,082,685	-		IAI47_05115	0.26	-0.4
1,082,685	-		IAI47_05115	0.26	-0.1
1,082,685	-		IAI47_05115	0.26	+0.2
1,082,685	-		IAI47_05115	0.26	-1.7
1,082,685	-		IAI47_05115	0.26	-0.4
1,082,685	-		IAI47_05115	0.26	+0.3
1,082,760	-		IAI47_05115	0.36	+0.4
1,082,771	-		IAI47_05115	0.38	-1.9
1,082,771	-		IAI47_05115	0.38	+0.4
1,082,771	-		IAI47_05115	0.38	-0.7
1,082,771	-		IAI47_05115	0.38	-0.7
1,082,771	-		IAI47_05115	0.38	+0.5
1,082,771	-		IAI47_05115	0.38	+0.1
1,082,771	-		IAI47_05115	0.38	-1.9
1,082,771	-		IAI47_05115	0.38	-0.7
1,082,771	-		IAI47_05115	0.38	+0.1
1,082,823	-		IAI47_05115	0.44	+0.3
1,082,823	-		IAI47_05115	0.44	-1.1
1,082,829	-		IAI47_05115	0.45	+0.9
1,082,908	+		IAI47_05115	0.55	+0.3
1,082,909	-		IAI47_05115	0.55	+0.5
1,082,909	-		IAI47_05115	0.55	-0.4
1,082,915	+		IAI47_05115	0.56	+0.4
1,082,916	-		IAI47_05115	0.56	-1.1
1,082,933	+		IAI47_05115	0.59	+0.7
1,082,933	+		IAI47_05115	0.59	+1.6
1,082,933	+		IAI47_05115	0.59	-0.6
1,082,933	+		IAI47_05115	0.59	+0.2
1,082,933	+		IAI47_05115	0.59	-0.9
1,082,933	+		IAI47_05115	0.59	+0.5
1,082,934	-		IAI47_05115	0.59	-0.5
1,082,934	-		IAI47_05115	0.59	-0.7
1,082,934	-		IAI47_05115	0.59	+0.9
1,082,934	-		IAI47_05115	0.59	-0.1
1,082,934	-		IAI47_05115	0.59	+0.6
1,082,934	-		IAI47_05115	0.59	-1.1
1,082,934	-		IAI47_05115	0.59	+0.3
1,082,962	+		IAI47_05115	0.62	-1.9
1,082,962	+		IAI47_05115	0.62	-0.5
1,082,962	+		IAI47_05115	0.62	+0.5
1,082,962	+		IAI47_05115	0.62	+1.4
1,082,962	+		IAI47_05115	0.62	-1.0
1,082,962	+		IAI47_05115	0.62	+0.6
1,082,963	-		IAI47_05115	0.62	-0.3
1,082,963	-		IAI47_05115	0.62	+0.1
1,082,963	-		IAI47_05115	0.62	+0.3
1,082,963	-		IAI47_05115	0.62	+1.6
1,083,163	+		IAI47_05115	0.88	+0.2
1,083,163	+		IAI47_05115	0.88	+0.2
1,083,163	+		IAI47_05115	0.88	-1.0
1,083,163	+		IAI47_05115	0.88	+0.1
1,083,163	+		IAI47_05115	0.88	+0.2
1,083,163	+		IAI47_05115	0.88	+0.1
1,083,164	-		IAI47_05115	0.88	-0.0
1,083,164	-		IAI47_05115	0.88	-1.6
1,083,164	-		IAI47_05115	0.88	+0.5
1,083,164	-		IAI47_05115	0.88	+0.1
1,083,164	-		IAI47_05115	0.88	+0.7
1,083,164	-		IAI47_05115	0.88	-0.9
1,083,164	-		IAI47_05115	0.88	+0.2
1,083,166	+		IAI47_05115	0.89	+2.1
1,083,166	+		IAI47_05115	0.89	+1.0
1,083,167	-		IAI47_05115	0.89	-0.5
1,083,167	-		IAI47_05115	0.89	-1.8
1,083,167	-		IAI47_05115	0.89	+0.6
1,083,167	-		IAI47_05115	0.89	-0.4
1,083,167	-		IAI47_05115	0.89	+0.9
1,083,167	-		IAI47_05115	0.89	+0.2
1,083,315	+		IAI47_05120	0.17	-0.1
1,083,316	-		IAI47_05120	0.18	+0.1
1,083,316	-		IAI47_05120	0.18	-0.9
1,083,316	-		IAI47_05120	0.18	-0.5
1,083,407	+		IAI47_05120	0.68	+0.0
1,083,407	+		IAI47_05120	0.68	-0.7
1,083,408	-				+0.9
1,083,418	+		IAI47_05120	0.74	-1.0
1,083,418	+		IAI47_05120	0.74	-1.6
1,083,419	-		IAI47_05120	0.75	-1.1
1,083,458	-				+1.0
1,083,542	+				+0.5
1,083,542	+				-0.6
1,083,543	-				+2.3
1,083,543	-				-0.6
1,083,543	-				-1.1
1,083,543	-				-0.0
1,083,543	-				+1.0
1,083,544	+				-1.7
1,083,544	+				+0.1
1,083,544	+				-0.5
1,083,545	-				-0.7
1,083,545	-				+0.2
1,083,545	-				-1.1
1,083,558	+				-0.5
1,083,559	-				-0.3
1,083,594	+				+0.4
1,083,602	-				-1.7
1,083,602	-				+0.9
1,083,647	+				+2.9
1,083,681	+				+1.1
1,083,682	-				+0.4
1,083,682	-				+0.5
1,083,701	+		IAI47_05125	0.17	+0.5
1,083,701	+		IAI47_05125	0.17	+0.1
1,083,702	-		IAI47_05125	0.18	+1.1
1,083,702	-		IAI47_05125	0.18	+0.5
1,083,706	+		IAI47_05125	0.20	+1.9
1,083,766	+		IAI47_05125	0.44	+0.5
1,083,767	-		IAI47_05125	0.44	-1.5
1,083,767	-		IAI47_05125	0.44	+0.5
1,083,875	+		IAI47_05125	0.88	-1.6
1,083,879	+				+0.4
1,083,879	+				+1.9
1,083,879	+				-0.1
1,083,879	+				-0.1
1,083,879	+				+0.7
1,083,879	+				-0.7
1,083,879	+				-1.0
1,083,879	+				+0.7
1,083,879	+				+0.2
1,083,879	+				+0.1
1,083,879	+				+0.5
1,083,880	-				+0.1
1,083,880	-				-0.4
1,083,880	-				+0.5
1,083,880	-				+2.5
1,083,880	-				-1.3
1,083,880	-				-1.3
1,083,880	-				-1.9
1,083,880	-				+0.4
1,083,880	-				+0.2
1,083,880	-				-0.8
1,083,889	+				-0.6
1,083,923	+				-0.7
1,083,930	+				+0.3
1,083,938	+				+0.3
1,084,093	+		IAI47_05130	0.34	+0.1
1,084,127	+		IAI47_05130	0.41	+2.0
1,084,129	+		IAI47_05130	0.41	-0.3
1,084,147	+		IAI47_05130	0.45	-0.7
1,084,214	+		IAI47_05130	0.58	+0.9
1,084,220	+		IAI47_05130	0.59	+2.3
1,084,220	+		IAI47_05130	0.59	-0.7
1,084,220	+		IAI47_05130	0.59	+0.9
1,084,220	+		IAI47_05130	0.59	-0.0
1,084,220	+		IAI47_05130	0.59	-0.2
1,084,225	+		IAI47_05130	0.60	+2.1
1,084,225	+		IAI47_05130	0.60	-0.5
1,084,225	+		IAI47_05130	0.60	-1.4
1,084,291	+		IAI47_05130	0.74	-1.0
1,084,291	+		IAI47_05130	0.74	-0.8
1,084,291	+		IAI47_05130	0.74	+0.9
1,084,291	+		IAI47_05130	0.74	+0.9
1,084,291	+		IAI47_05130	0.74	-2.1
1,084,329	+		IAI47_05130	0.81	+0.7
1,084,329	+		IAI47_05130	0.81	+1.2
1,084,329	+		IAI47_05130	0.81	-0.9
1,084,330	-		IAI47_05130	0.82	-0.1
1,084,463	+				+0.1
1,084,463	+				+0.4
1,084,463	+				+0.3