Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01485 and IAI47_01490 are separated by 62 nucleotides IAI47_01490 and IAI47_01495 are separated by 47 nucleotides IAI47_01495 and IAI47_01500 are separated by 49 nucleotides
IAI47_01485: IAI47_01485 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 323,971 to 325,911
_01485
IAI47_01490: IAI47_01490 - Gfo/Idh/MocA family oxidoreductase, at 325,974 to 326,984
_01490
IAI47_01495: IAI47_01495 - myo-inosose-2 dehydratase, at 327,032 to 327,928
_01495
IAI47_01500: IAI47_01500 - DcrB family lipoprotein, at 327,978 to 328,532
_01500
Position (kb) 325
326
327 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 324.974 kb on - strand, within IAI47_01485 at 324.974 kb on - strand, within IAI47_01485 at 324.974 kb on - strand, within IAI47_01485 at 324.974 kb on - strand, within IAI47_01485 at 325.054 kb on + strand, within IAI47_01485 at 325.055 kb on - strand, within IAI47_01485 at 325.055 kb on - strand, within IAI47_01485 at 325.123 kb on + strand, within IAI47_01485 at 325.123 kb on + strand, within IAI47_01485 at 325.124 kb on - strand, within IAI47_01485 at 325.136 kb on - strand, within IAI47_01485 at 325.136 kb on - strand, within IAI47_01485 at 325.241 kb on + strand, within IAI47_01485 at 325.242 kb on - strand, within IAI47_01485 at 325.342 kb on + strand, within IAI47_01485 at 325.342 kb on + strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.351 kb on + strand, within IAI47_01485 at 325.352 kb on - strand, within IAI47_01485 at 325.352 kb on - strand, within IAI47_01485 at 325.352 kb on - strand, within IAI47_01485 at 325.363 kb on + strand, within IAI47_01485 at 325.363 kb on + strand, within IAI47_01485 at 325.363 kb on + strand, within IAI47_01485 at 325.363 kb on + strand, within IAI47_01485 at 325.364 kb on - strand, within IAI47_01485 at 325.369 kb on + strand, within IAI47_01485 at 325.369 kb on + strand, within IAI47_01485 at 325.369 kb on + strand, within IAI47_01485 at 325.369 kb on + strand, within IAI47_01485 at 325.370 kb on - strand, within IAI47_01485 at 325.438 kb on + strand, within IAI47_01485 at 325.438 kb on + strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.464 kb on + strand, within IAI47_01485 at 325.464 kb on + strand, within IAI47_01485 at 325.464 kb on + strand, within IAI47_01485 at 325.465 kb on - strand, within IAI47_01485 at 325.465 kb on - strand, within IAI47_01485 at 325.465 kb on - strand, within IAI47_01485 at 325.516 kb on - strand, within IAI47_01485 at 325.533 kb on + strand, within IAI47_01485 at 325.533 kb on + strand, within IAI47_01485 at 325.678 kb on + strand, within IAI47_01485 at 325.693 kb on + strand, within IAI47_01485 at 325.693 kb on + strand, within IAI47_01485 at 325.765 kb on - strand at 325.785 kb on + strand at 325.786 kb on + strand at 325.804 kb on + strand at 325.805 kb on - strand at 325.909 kb on + strand at 325.951 kb on - strand at 325.951 kb on - strand at 325.959 kb on + strand at 325.960 kb on - strand at 325.960 kb on - strand at 325.960 kb on - strand at 325.960 kb on - strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.973 kb on + strand at 325.973 kb on + strand at 325.973 kb on + strand at 326.000 kb on + strand at 326.001 kb on - strand at 326.001 kb on - strand at 326.024 kb on + strand at 326.024 kb on + strand at 326.024 kb on + strand at 326.024 kb on + strand at 326.024 kb on + strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.225 kb on - strand, within IAI47_01490 at 326.348 kb on + strand, within IAI47_01490 at 326.349 kb on - strand, within IAI47_01490 at 326.358 kb on + strand, within IAI47_01490 at 326.358 kb on + strand, within IAI47_01490 at 326.358 kb on + strand, within IAI47_01490 at 326.359 kb on - strand, within IAI47_01490 at 326.359 kb on - strand, within IAI47_01490 at 326.393 kb on + strand, within IAI47_01490 at 326.394 kb on - strand, within IAI47_01490 at 326.394 kb on - strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.538 kb on + strand, within IAI47_01490 at 326.538 kb on + strand, within IAI47_01490 at 326.538 kb on + strand, within IAI47_01490 at 326.539 kb on - strand, within IAI47_01490 at 326.539 kb on - strand, within IAI47_01490 at 326.539 kb on - strand, within IAI47_01490 at 326.539 kb on - strand, within IAI47_01490 at 326.540 kb on + strand, within IAI47_01490 at 326.540 kb on + strand, within IAI47_01490 at 326.540 kb on + strand, within IAI47_01490 at 326.540 kb on + strand, within IAI47_01490 at 326.541 kb on - strand, within IAI47_01490 at 326.541 kb on - strand, within IAI47_01490 at 326.541 kb on - strand, within IAI47_01490 at 326.541 kb on - strand, within IAI47_01490 at 326.640 kb on - strand, within IAI47_01490 at 326.660 kb on + strand, within IAI47_01490 at 326.670 kb on + strand, within IAI47_01490 at 326.671 kb on - strand, within IAI47_01490 at 326.671 kb on - strand, within IAI47_01490 at 326.676 kb on + strand, within IAI47_01490 at 326.676 kb on + strand, within IAI47_01490 at 326.677 kb on - strand, within IAI47_01490 at 326.740 kb on + strand, within IAI47_01490 at 326.740 kb on + strand, within IAI47_01490 at 326.741 kb on - strand, within IAI47_01490 at 326.811 kb on + strand, within IAI47_01490 at 326.811 kb on + strand, within IAI47_01490 at 326.811 kb on + strand, within IAI47_01490 at 326.811 kb on + strand, within IAI47_01490 at 326.812 kb on - strand, within IAI47_01490 at 326.812 kb on - strand, within IAI47_01490 at 326.812 kb on - strand, within IAI47_01490 at 326.834 kb on + strand, within IAI47_01490 at 326.861 kb on + strand, within IAI47_01490 at 326.861 kb on + strand, within IAI47_01490 at 326.862 kb on - strand, within IAI47_01490 at 326.976 kb on + strand at 326.976 kb on + strand at 326.976 kb on + strand at 326.977 kb on - strand at 326.977 kb on - strand at 326.977 kb on - strand at 326.978 kb on + strand at 326.978 kb on + strand at 326.979 kb on - strand at 326.979 kb on - strand at 326.979 kb on - strand at 326.995 kb on + strand at 326.995 kb on + strand at 326.996 kb on - strand at 327.049 kb on - strand at 327.112 kb on + strand at 327.113 kb on - strand at 327.113 kb on - strand at 327.155 kb on - strand, within IAI47_01495 at 327.179 kb on + strand, within IAI47_01495 at 327.361 kb on + strand, within IAI47_01495 at 327.361 kb on + strand, within IAI47_01495 at 327.361 kb on + strand, within IAI47_01495 at 327.362 kb on - strand, within IAI47_01495 at 327.367 kb on + strand, within IAI47_01495 at 327.367 kb on + strand, within IAI47_01495 at 327.368 kb on - strand, within IAI47_01495 at 327.368 kb on - strand, within IAI47_01495 at 327.432 kb on + strand, within IAI47_01495 at 327.433 kb on - strand, within IAI47_01495 at 327.446 kb on + strand, within IAI47_01495 at 327.547 kb on + strand, within IAI47_01495 at 327.581 kb on + strand, within IAI47_01495 at 327.581 kb on + strand, within IAI47_01495 at 327.581 kb on + strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.599 kb on + strand, within IAI47_01495 at 327.599 kb on + strand, within IAI47_01495 at 327.599 kb on + strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.602 kb on + strand, within IAI47_01495 at 327.602 kb on + strand, within IAI47_01495 at 327.648 kb on - strand, within IAI47_01495 at 327.648 kb on - strand, within IAI47_01495 at 327.757 kb on + strand, within IAI47_01495 at 327.800 kb on - strand, within IAI47_01495 at 327.815 kb on + strand, within IAI47_01495 at 327.816 kb on - strand, within IAI47_01495 at 327.821 kb on + strand, within IAI47_01495 at 327.821 kb on + strand, within IAI47_01495 at 327.822 kb on - strand, within IAI47_01495 at 327.881 kb on + strand at 327.881 kb on + strand at 327.902 kb on + strand at 327.903 kb on - strand at 327.903 kb on - strand at 327.905 kb on - strand at 327.916 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.926 kb on + strand at 327.926 kb on + strand at 327.927 kb on - strand at 327.980 kb on - strand at 327.980 kb on - strand at 327.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 324,974 - IAI47_01485 0.52 -0.1 324,974 - IAI47_01485 0.52 +0.2 324,974 - IAI47_01485 0.52 -0.8 324,974 - IAI47_01485 0.52 +0.5 325,054 + IAI47_01485 0.56 -0.7 325,055 - IAI47_01485 0.56 +1.5 325,055 - IAI47_01485 0.56 -0.1 325,123 + IAI47_01485 0.59 +1.2 325,123 + IAI47_01485 0.59 -2.4 325,124 - IAI47_01485 0.59 -0.5 325,136 - IAI47_01485 0.60 +0.9 325,136 - IAI47_01485 0.60 -0.8 325,241 + IAI47_01485 0.65 -0.4 325,242 - IAI47_01485 0.65 +0.6 325,342 + IAI47_01485 0.71 +0.6 325,342 + IAI47_01485 0.71 -1.1 325,343 - IAI47_01485 0.71 -0.9 325,343 - IAI47_01485 0.71 +0.7 325,343 - IAI47_01485 0.71 +0.2 325,343 - IAI47_01485 0.71 +0.6 325,343 - IAI47_01485 0.71 -0.9 325,351 + IAI47_01485 0.71 +0.3 325,352 - IAI47_01485 0.71 -1.6 325,352 - IAI47_01485 0.71 -1.8 325,352 - IAI47_01485 0.71 -1.4 325,363 + IAI47_01485 0.72 +0.1 325,363 + IAI47_01485 0.72 -0.0 325,363 + IAI47_01485 0.72 +0.1 325,363 + IAI47_01485 0.72 +1.3 325,364 - IAI47_01485 0.72 -0.8 325,369 + IAI47_01485 0.72 +2.4 325,369 + IAI47_01485 0.72 +2.0 325,369 + IAI47_01485 0.72 +1.2 325,369 + IAI47_01485 0.72 +0.9 325,370 - IAI47_01485 0.72 -0.5 325,438 + IAI47_01485 0.76 +1.2 325,438 + IAI47_01485 0.76 -0.4 325,439 - IAI47_01485 0.76 +0.3 325,439 - IAI47_01485 0.76 +0.9 325,439 - IAI47_01485 0.76 +0.2 325,439 - IAI47_01485 0.76 +0.3 325,439 - IAI47_01485 0.76 +0.4 325,439 - IAI47_01485 0.76 +1.6 325,464 + IAI47_01485 0.77 +0.9 325,464 + IAI47_01485 0.77 -0.8 325,464 + IAI47_01485 0.77 +0.8 325,465 - IAI47_01485 0.77 +1.9 325,465 - IAI47_01485 0.77 -0.9 325,465 - IAI47_01485 0.77 +0.2 325,516 - IAI47_01485 0.80 -0.1 325,533 + IAI47_01485 0.80 +0.4 325,533 + IAI47_01485 0.80 +0.3 325,678 + IAI47_01485 0.88 +1.9 325,693 + IAI47_01485 0.89 -0.8 325,693 + IAI47_01485 0.89 -0.5 325,765 - -0.9 325,785 + -0.4 325,786 + +0.3 325,804 + -0.1 325,805 - +1.1 325,909 + +0.6 325,951 - -1.3 325,951 - -1.7 325,959 + +3.4 325,960 - +1.1 325,960 - -0.7 325,960 - +0.9 325,960 - +0.1 325,969 + -0.7 325,969 + +0.6 325,969 + -0.5 325,969 + -0.1 325,969 + -1.1 325,969 + +0.9 325,969 + -0.1 325,969 + +0.9 325,969 + +0.4 325,969 + -0.1 325,969 + -0.8 325,969 + -0.1 325,969 + -0.6 325,969 + +1.3 325,969 + +0.6 325,970 - -1.6 325,970 - +0.1 325,970 - -2.1 325,970 - +1.0 325,970 - +2.0 325,970 - +0.9 325,970 - -1.1 325,973 + -0.7 325,973 + -0.4 325,973 + -0.1 326,000 + +0.0 326,001 - -1.4 326,001 - +0.3 326,024 + -0.9 326,024 + -0.9 326,024 + +2.5 326,024 + +0.9 326,024 + +0.9 326,025 - +0.4 326,025 - -0.4 326,025 - -1.2 326,025 - +0.4 326,025 - -0.4 326,025 - +1.5 326,025 - +0.3 326,225 - IAI47_01490 0.25 -0.2 326,348 + IAI47_01490 0.37 +0.1 326,349 - IAI47_01490 0.37 -1.4 326,358 + IAI47_01490 0.38 -0.1 326,358 + IAI47_01490 0.38 -1.3 326,358 + IAI47_01490 0.38 -0.9 326,359 - IAI47_01490 0.38 +2.9 326,359 - IAI47_01490 0.38 -0.3 326,393 + IAI47_01490 0.41 -0.7 326,394 - IAI47_01490 0.42 +0.7 326,394 - IAI47_01490 0.42 +0.5 326,463 + IAI47_01490 0.48 -0.4 326,463 + IAI47_01490 0.48 -0.1 326,463 + IAI47_01490 0.48 -0.9 326,463 + IAI47_01490 0.48 -1.0 326,463 + IAI47_01490 0.48 +0.3 326,464 - IAI47_01490 0.48 -0.2 326,464 - IAI47_01490 0.48 +0.2 326,464 - IAI47_01490 0.48 -0.4 326,464 - IAI47_01490 0.48 -0.8 326,464 - IAI47_01490 0.48 +0.6 326,464 - IAI47_01490 0.48 -0.1 326,464 - IAI47_01490 0.48 +0.1 326,464 - IAI47_01490 0.48 -0.8 326,464 - IAI47_01490 0.48 -0.8 326,538 + IAI47_01490 0.56 -0.1 326,538 + IAI47_01490 0.56 -1.1 326,538 + IAI47_01490 0.56 -0.5 326,539 - IAI47_01490 0.56 -0.4 326,539 - IAI47_01490 0.56 -0.4 326,539 - IAI47_01490 0.56 -1.3 326,539 - IAI47_01490 0.56 +0.2 326,540 + IAI47_01490 0.56 -0.7 326,540 + IAI47_01490 0.56 +0.3 326,540 + IAI47_01490 0.56 -0.5 326,540 + IAI47_01490 0.56 -1.4 326,541 - IAI47_01490 0.56 -0.4 326,541 - IAI47_01490 0.56 -0.1 326,541 - IAI47_01490 0.56 -0.7 326,541 - IAI47_01490 0.56 -1.1 326,640 - IAI47_01490 0.66 -0.1 326,660 + IAI47_01490 0.68 -0.9 326,670 + IAI47_01490 0.69 -0.1 326,671 - IAI47_01490 0.69 -0.3 326,671 - IAI47_01490 0.69 -0.8 326,676 + IAI47_01490 0.69 +0.9 326,676 + IAI47_01490 0.69 -0.8 326,677 - IAI47_01490 0.70 -0.1 326,740 + IAI47_01490 0.76 -0.1 326,740 + IAI47_01490 0.76 -1.4 326,741 - IAI47_01490 0.76 +0.9 326,811 + IAI47_01490 0.83 +0.3 326,811 + IAI47_01490 0.83 +1.3 326,811 + IAI47_01490 0.83 -0.3 326,811 + IAI47_01490 0.83 -0.3 326,812 - IAI47_01490 0.83 +1.3 326,812 - IAI47_01490 0.83 -0.1 326,812 - IAI47_01490 0.83 -0.5 326,834 + IAI47_01490 0.85 -0.6 326,861 + IAI47_01490 0.88 -0.1 326,861 + IAI47_01490 0.88 +0.8 326,862 - IAI47_01490 0.88 -0.1 326,976 + +1.3 326,976 + -0.9 326,976 + +0.5 326,977 - -0.7 326,977 - -1.3 326,977 - -1.0 326,978 + -0.5 326,978 + -1.0 326,979 - +0.6 326,979 - -1.3 326,979 - +0.2 326,995 + -0.1 326,995 + -0.1 326,996 - -0.4 327,049 - -0.1 327,112 + -0.2 327,113 - -1.2 327,113 - -2.4 327,155 - IAI47_01495 0.14 +0.3 327,179 + IAI47_01495 0.16 -0.2 327,361 + IAI47_01495 0.37 +0.9 327,361 + IAI47_01495 0.37 -2.0 327,361 + IAI47_01495 0.37 -0.1 327,362 - IAI47_01495 0.37 -1.1 327,367 + IAI47_01495 0.37 -1.4 327,367 + IAI47_01495 0.37 +0.9 327,368 - IAI47_01495 0.37 -0.9 327,368 - IAI47_01495 0.37 -0.7 327,432 + IAI47_01495 0.45 -0.8 327,433 - IAI47_01495 0.45 -1.4 327,446 + IAI47_01495 0.46 -1.0 327,547 + IAI47_01495 0.57 +0.5 327,581 + IAI47_01495 0.61 -0.2 327,581 + IAI47_01495 0.61 +1.1 327,581 + IAI47_01495 0.61 -0.2 327,582 - IAI47_01495 0.61 -0.1 327,582 - IAI47_01495 0.61 -0.1 327,582 - IAI47_01495 0.61 +1.9 327,582 - IAI47_01495 0.61 -0.3 327,599 + IAI47_01495 0.63 -0.7 327,599 + IAI47_01495 0.63 -1.9 327,599 + IAI47_01495 0.63 +0.8 327,600 - IAI47_01495 0.63 +0.3 327,600 - IAI47_01495 0.63 -0.8 327,600 - IAI47_01495 0.63 -0.2 327,600 - IAI47_01495 0.63 +3.2 327,600 - IAI47_01495 0.63 +1.2 327,602 + IAI47_01495 0.64 +0.0 327,602 + IAI47_01495 0.64 +0.3 327,648 - IAI47_01495 0.69 +0.4 327,648 - IAI47_01495 0.69 +0.8 327,757 + IAI47_01495 0.81 +1.5 327,800 - IAI47_01495 0.86 -0.4 327,815 + IAI47_01495 0.87 +0.8 327,816 - IAI47_01495 0.87 -1.1 327,821 + IAI47_01495 0.88 -0.5 327,821 + IAI47_01495 0.88 -0.4 327,822 - IAI47_01495 0.88 +0.9 327,881 + +0.3 327,881 + -0.2 327,902 + -0.0 327,903 - +2.3 327,903 - +0.3 327,905 - +1.9 327,916 + -0.1 327,924 + -0.1 327,924 + +0.5 327,924 + -0.3 327,924 + -1.6 327,924 + +0.4 327,926 + -1.5 327,926 + -0.3 327,927 - -0.7 327,980 - -0.7 327,980 - -1.2 327,980 - +1.3
Or see this region's nucleotide sequence