Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19585 and IAI47_19590 are separated by 33 nucleotides IAI47_19590 and IAI47_19595 are separated by 23 nucleotides IAI47_19595 and IAI47_19600 overlap by 4 nucleotides
IAI47_19585: IAI47_19585 - EAL domain-containing protein, at 146,121 to 147,893
_19585
IAI47_19590: IAI47_19590 - ABC transporter substrate-binding protein, at 147,927 to 148,862
_19590
IAI47_19595: IAI47_19595 - ABC transporter permease, at 148,886 to 149,641
_19595
IAI47_19600: IAI47_19600 - ABC transporter ATP-binding protein, at 149,638 to 150,378
_19600
Position (kb) 147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 146.960 kb on + strand, within IAI47_19585 at 146.960 kb on + strand, within IAI47_19585 at 146.960 kb on + strand, within IAI47_19585 at 146.961 kb on - strand, within IAI47_19585 at 146.961 kb on - strand, within IAI47_19585 at 146.982 kb on - strand, within IAI47_19585 at 147.031 kb on + strand, within IAI47_19585 at 147.031 kb on + strand, within IAI47_19585 at 147.032 kb on - strand, within IAI47_19585 at 147.102 kb on + strand, within IAI47_19585 at 147.103 kb on - strand, within IAI47_19585 at 147.103 kb on - strand, within IAI47_19585 at 147.128 kb on + strand, within IAI47_19585 at 147.129 kb on - strand, within IAI47_19585 at 147.129 kb on - strand, within IAI47_19585 at 147.177 kb on + strand, within IAI47_19585 at 147.177 kb on + strand, within IAI47_19585 at 147.178 kb on - strand, within IAI47_19585 at 147.178 kb on - strand, within IAI47_19585 at 147.194 kb on + strand, within IAI47_19585 at 147.194 kb on + strand, within IAI47_19585 at 147.215 kb on + strand, within IAI47_19585 at 147.215 kb on + strand, within IAI47_19585 at 147.216 kb on - strand, within IAI47_19585 at 147.216 kb on - strand, within IAI47_19585 at 147.302 kb on + strand, within IAI47_19585 at 147.381 kb on + strand, within IAI47_19585 at 147.381 kb on + strand, within IAI47_19585 at 147.381 kb on + strand, within IAI47_19585 at 147.381 kb on + strand, within IAI47_19585 at 147.382 kb on - strand, within IAI47_19585 at 147.488 kb on + strand, within IAI47_19585 at 147.489 kb on - strand, within IAI47_19585 at 147.544 kb on + strand, within IAI47_19585 at 147.610 kb on - strand, within IAI47_19585 at 147.610 kb on - strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.620 kb on + strand, within IAI47_19585 at 147.621 kb on - strand, within IAI47_19585 at 147.621 kb on - strand, within IAI47_19585 at 147.621 kb on - strand, within IAI47_19585 at 147.621 kb on - strand, within IAI47_19585 at 147.621 kb on - strand, within IAI47_19585 at 147.621 kb on - strand, within IAI47_19585 at 147.621 kb on - strand, within IAI47_19585 at 147.621 kb on - strand, within IAI47_19585 at 147.621 kb on - strand, within IAI47_19585 at 147.625 kb on - strand, within IAI47_19585 at 147.625 kb on - strand, within IAI47_19585 at 147.681 kb on - strand, within IAI47_19585 at 147.747 kb on + strand at 147.748 kb on - strand at 147.748 kb on - strand at 147.748 kb on - strand at 147.748 kb on - strand at 147.748 kb on - strand at 147.749 kb on + strand at 147.749 kb on + strand at 147.804 kb on + strand at 147.804 kb on + strand at 147.828 kb on + strand at 147.829 kb on - strand at 147.892 kb on - strand at 147.895 kb on - strand at 147.895 kb on - strand at 147.925 kb on + strand at 147.926 kb on - strand at 147.946 kb on + strand at 147.972 kb on - strand at 147.972 kb on - strand at 147.972 kb on - strand at 147.972 kb on - strand at 147.972 kb on - strand at 147.972 kb on - strand at 147.984 kb on - strand at 147.984 kb on - strand at 147.984 kb on - strand at 148.003 kb on + strand at 148.003 kb on + strand at 148.004 kb on - strand at 148.004 kb on - strand at 148.004 kb on - strand at 148.004 kb on - strand at 148.004 kb on - strand at 148.091 kb on + strand, within IAI47_19590 at 148.092 kb on - strand, within IAI47_19590 at 148.243 kb on + strand, within IAI47_19590 at 148.244 kb on - strand, within IAI47_19590 at 148.258 kb on + strand, within IAI47_19590 at 148.258 kb on + strand, within IAI47_19590 at 148.258 kb on + strand, within IAI47_19590 at 148.259 kb on - strand, within IAI47_19590 at 148.259 kb on - strand, within IAI47_19590 at 148.259 kb on - strand, within IAI47_19590 at 148.259 kb on - strand, within IAI47_19590 at 148.271 kb on + strand, within IAI47_19590 at 148.347 kb on + strand, within IAI47_19590 at 148.347 kb on + strand, within IAI47_19590 at 148.386 kb on - strand, within IAI47_19590 at 148.386 kb on - strand, within IAI47_19590 at 148.460 kb on + strand, within IAI47_19590 at 148.461 kb on - strand, within IAI47_19590 at 148.461 kb on - strand, within IAI47_19590 at 148.461 kb on - strand, within IAI47_19590 at 148.494 kb on + strand, within IAI47_19590 at 148.495 kb on - strand, within IAI47_19590 at 148.524 kb on + strand, within IAI47_19590 at 148.525 kb on - strand, within IAI47_19590 at 148.525 kb on - strand, within IAI47_19590 at 148.525 kb on - strand, within IAI47_19590 at 148.525 kb on - strand, within IAI47_19590 at 148.618 kb on + strand, within IAI47_19590 at 148.618 kb on + strand, within IAI47_19590 at 148.619 kb on - strand, within IAI47_19590 at 148.619 kb on - strand, within IAI47_19590 at 148.622 kb on + strand, within IAI47_19590 at 148.622 kb on + strand, within IAI47_19590 at 148.622 kb on + strand, within IAI47_19590 at 148.622 kb on + strand, within IAI47_19590 at 148.622 kb on + strand, within IAI47_19590 at 148.622 kb on + strand, within IAI47_19590 at 148.622 kb on + strand, within IAI47_19590 at 148.622 kb on + strand, within IAI47_19590 at 148.622 kb on + strand, within IAI47_19590 at 148.623 kb on - strand, within IAI47_19590 at 148.623 kb on - strand, within IAI47_19590 at 148.623 kb on - strand, within IAI47_19590 at 148.623 kb on - strand, within IAI47_19590 at 148.623 kb on - strand, within IAI47_19590 at 148.623 kb on - strand, within IAI47_19590 at 148.623 kb on - strand, within IAI47_19590 at 148.629 kb on + strand, within IAI47_19590 at 148.629 kb on + strand, within IAI47_19590 at 148.629 kb on + strand, within IAI47_19590 at 148.630 kb on - strand, within IAI47_19590 at 148.630 kb on - strand, within IAI47_19590 at 148.691 kb on + strand, within IAI47_19590 at 148.691 kb on + strand, within IAI47_19590 at 148.692 kb on - strand, within IAI47_19590 at 148.692 kb on - strand, within IAI47_19590 at 148.692 kb on - strand, within IAI47_19590 at 148.692 kb on - strand, within IAI47_19590 at 148.695 kb on + strand, within IAI47_19590 at 148.695 kb on + strand, within IAI47_19590 at 148.695 kb on + strand, within IAI47_19590 at 148.695 kb on + strand, within IAI47_19590 at 148.696 kb on - strand, within IAI47_19590 at 148.696 kb on - strand, within IAI47_19590 at 148.742 kb on + strand, within IAI47_19590 at 148.742 kb on + strand, within IAI47_19590 at 148.743 kb on - strand, within IAI47_19590 at 148.743 kb on - strand, within IAI47_19590 at 148.743 kb on - strand, within IAI47_19590 at 148.743 kb on - strand, within IAI47_19590 at 148.766 kb on + strand, within IAI47_19590 at 148.766 kb on + strand, within IAI47_19590 at 148.767 kb on - strand, within IAI47_19590 at 148.767 kb on - strand, within IAI47_19590 at 148.767 kb on - strand, within IAI47_19590 at 148.767 kb on - strand, within IAI47_19590 at 148.768 kb on + strand, within IAI47_19590 at 148.768 kb on + strand, within IAI47_19590 at 148.768 kb on + strand, within IAI47_19590 at 148.769 kb on - strand at 148.842 kb on + strand at 148.842 kb on + strand at 148.856 kb on + strand at 148.857 kb on - strand at 148.857 kb on - strand at 148.857 kb on - strand at 148.878 kb on - strand at 148.909 kb on + strand at 148.909 kb on + strand at 148.909 kb on + strand at 148.909 kb on + strand at 148.909 kb on + strand at 148.910 kb on - strand at 148.910 kb on - strand at 148.910 kb on - strand at 148.910 kb on - strand at 149.069 kb on - strand, within IAI47_19595 at 149.179 kb on + strand, within IAI47_19595 at 149.180 kb on - strand, within IAI47_19595 at 149.333 kb on + strand, within IAI47_19595 at 149.381 kb on + strand, within IAI47_19595 at 149.382 kb on - strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.394 kb on + strand, within IAI47_19595 at 149.395 kb on - strand, within IAI47_19595 at 149.395 kb on - strand, within IAI47_19595 at 149.481 kb on + strand, within IAI47_19595 at 149.481 kb on + strand, within IAI47_19595 at 149.481 kb on + strand, within IAI47_19595 at 149.481 kb on + strand, within IAI47_19595 at 149.482 kb on - strand, within IAI47_19595 at 149.482 kb on - strand, within IAI47_19595 at 149.490 kb on + strand, within IAI47_19595 at 149.490 kb on + strand, within IAI47_19595 at 149.490 kb on + strand, within IAI47_19595 at 149.491 kb on - strand, within IAI47_19595 at 149.491 kb on - strand, within IAI47_19595 at 149.515 kb on + strand, within IAI47_19595 at 149.515 kb on + strand, within IAI47_19595 at 149.516 kb on - strand, within IAI47_19595 at 149.516 kb on - strand, within IAI47_19595 at 149.554 kb on + strand, within IAI47_19595 at 149.554 kb on + strand, within IAI47_19595 at 149.554 kb on + strand, within IAI47_19595 at 149.555 kb on - strand, within IAI47_19595 at 149.605 kb on + strand at 149.605 kb on + strand at 149.605 kb on + strand at 149.606 kb on - strand at 149.606 kb on - strand at 149.606 kb on - strand at 149.656 kb on + strand at 149.656 kb on + strand at 149.656 kb on + strand at 149.657 kb on - strand at 149.657 kb on - strand at 149.686 kb on + strand at 149.686 kb on + strand at 149.686 kb on + strand at 149.686 kb on + strand at 149.687 kb on - strand at 149.687 kb on - strand at 149.689 kb on + strand at 149.728 kb on + strand, within IAI47_19600 at 149.728 kb on + strand, within IAI47_19600
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 146,960 + IAI47_19585 0.47 -1.5 146,960 + IAI47_19585 0.47 +0.4 146,960 + IAI47_19585 0.47 +0.4 146,961 - IAI47_19585 0.47 -0.1 146,961 - IAI47_19585 0.47 -2.5 146,982 - IAI47_19585 0.49 +0.7 147,031 + IAI47_19585 0.51 -0.9 147,031 + IAI47_19585 0.51 +0.8 147,032 - IAI47_19585 0.51 +0.7 147,102 + IAI47_19585 0.55 +0.3 147,103 - IAI47_19585 0.55 -0.6 147,103 - IAI47_19585 0.55 +0.0 147,128 + IAI47_19585 0.57 -0.2 147,129 - IAI47_19585 0.57 -0.3 147,129 - IAI47_19585 0.57 -1.8 147,177 + IAI47_19585 0.60 -0.3 147,177 + IAI47_19585 0.60 +0.0 147,178 - IAI47_19585 0.60 -0.3 147,178 - IAI47_19585 0.60 +2.0 147,194 + IAI47_19585 0.61 +1.1 147,194 + IAI47_19585 0.61 -0.9 147,215 + IAI47_19585 0.62 -0.8 147,215 + IAI47_19585 0.62 -1.2 147,216 - IAI47_19585 0.62 +0.5 147,216 - IAI47_19585 0.62 -0.2 147,302 + IAI47_19585 0.67 +0.1 147,381 + IAI47_19585 0.71 +0.1 147,381 + IAI47_19585 0.71 -0.9 147,381 + IAI47_19585 0.71 +0.1 147,381 + IAI47_19585 0.71 -1.4 147,382 - IAI47_19585 0.71 +0.3 147,488 + IAI47_19585 0.77 +0.3 147,489 - IAI47_19585 0.77 +1.9 147,544 + IAI47_19585 0.80 +2.2 147,610 - IAI47_19585 0.84 -0.5 147,610 - IAI47_19585 0.84 -0.8 147,620 + IAI47_19585 0.85 +1.0 147,620 + IAI47_19585 0.85 -2.0 147,620 + IAI47_19585 0.85 +0.1 147,620 + IAI47_19585 0.85 -2.3 147,620 + IAI47_19585 0.85 -1.7 147,620 + IAI47_19585 0.85 +1.7 147,620 + IAI47_19585 0.85 -1.9 147,620 + IAI47_19585 0.85 +0.1 147,620 + IAI47_19585 0.85 +0.3 147,620 + IAI47_19585 0.85 -1.2 147,620 + IAI47_19585 0.85 -0.6 147,621 - IAI47_19585 0.85 +0.2 147,621 - IAI47_19585 0.85 +0.2 147,621 - IAI47_19585 0.85 -0.9 147,621 - IAI47_19585 0.85 -0.1 147,621 - IAI47_19585 0.85 -2.8 147,621 - IAI47_19585 0.85 -0.3 147,621 - IAI47_19585 0.85 +1.0 147,621 - IAI47_19585 0.85 -1.5 147,621 - IAI47_19585 0.85 -0.0 147,625 - IAI47_19585 0.85 +0.3 147,625 - IAI47_19585 0.85 +0.2 147,681 - IAI47_19585 0.88 -0.9 147,747 + -0.9 147,748 - -1.9 147,748 - -1.9 147,748 - +0.9 147,748 - +0.5 147,748 - +0.2 147,749 + -0.0 147,749 + -0.0 147,804 + +0.1 147,804 + -1.4 147,828 + -0.9 147,829 - +1.8 147,892 - +0.4 147,895 - +2.2 147,895 - -0.9 147,925 + +1.3 147,926 - -0.4 147,946 + +1.4 147,972 - -0.0 147,972 - -0.7 147,972 - -0.9 147,972 - -0.6 147,972 - +0.3 147,972 - -0.3 147,984 - -0.8 147,984 - -0.2 147,984 - +0.8 148,003 + +1.5 148,003 + -1.2 148,004 - +1.7 148,004 - +0.7 148,004 - +1.0 148,004 - +0.1 148,004 - -1.2 148,091 + IAI47_19590 0.18 +1.7 148,092 - IAI47_19590 0.18 -0.0 148,243 + IAI47_19590 0.34 -0.6 148,244 - IAI47_19590 0.34 -0.2 148,258 + IAI47_19590 0.35 -0.0 148,258 + IAI47_19590 0.35 -0.3 148,258 + IAI47_19590 0.35 -0.2 148,259 - IAI47_19590 0.35 +1.6 148,259 - IAI47_19590 0.35 -1.6 148,259 - IAI47_19590 0.35 +0.2 148,259 - IAI47_19590 0.35 +0.5 148,271 + IAI47_19590 0.37 -0.7 148,347 + IAI47_19590 0.45 -0.9 148,347 + IAI47_19590 0.45 +0.7 148,386 - IAI47_19590 0.49 -0.5 148,386 - IAI47_19590 0.49 -0.3 148,460 + IAI47_19590 0.57 -0.9 148,461 - IAI47_19590 0.57 -2.8 148,461 - IAI47_19590 0.57 +0.2 148,461 - IAI47_19590 0.57 +1.1 148,494 + IAI47_19590 0.61 +3.0 148,495 - IAI47_19590 0.61 -0.6 148,524 + IAI47_19590 0.64 +0.4 148,525 - IAI47_19590 0.64 -0.1 148,525 - IAI47_19590 0.64 +0.7 148,525 - IAI47_19590 0.64 -0.4 148,525 - IAI47_19590 0.64 +1.1 148,618 + IAI47_19590 0.74 +2.2 148,618 + IAI47_19590 0.74 -0.1 148,619 - IAI47_19590 0.74 +0.1 148,619 - IAI47_19590 0.74 -0.4 148,622 + IAI47_19590 0.74 -0.3 148,622 + IAI47_19590 0.74 +0.2 148,622 + IAI47_19590 0.74 +1.4 148,622 + IAI47_19590 0.74 -1.3 148,622 + IAI47_19590 0.74 +0.5 148,622 + IAI47_19590 0.74 -0.8 148,622 + IAI47_19590 0.74 +0.7 148,622 + IAI47_19590 0.74 -1.3 148,622 + IAI47_19590 0.74 -0.7 148,623 - IAI47_19590 0.74 +0.4 148,623 - IAI47_19590 0.74 -0.3 148,623 - IAI47_19590 0.74 -1.3 148,623 - IAI47_19590 0.74 -0.2 148,623 - IAI47_19590 0.74 +0.1 148,623 - IAI47_19590 0.74 +1.2 148,623 - IAI47_19590 0.74 -0.9 148,629 + IAI47_19590 0.75 -0.9 148,629 + IAI47_19590 0.75 +1.2 148,629 + IAI47_19590 0.75 -0.3 148,630 - IAI47_19590 0.75 -0.5 148,630 - IAI47_19590 0.75 +0.2 148,691 + IAI47_19590 0.82 -0.6 148,691 + IAI47_19590 0.82 -1.3 148,692 - IAI47_19590 0.82 -0.1 148,692 - IAI47_19590 0.82 -0.7 148,692 - IAI47_19590 0.82 -0.2 148,692 - IAI47_19590 0.82 -0.5 148,695 + IAI47_19590 0.82 -0.3 148,695 + IAI47_19590 0.82 -0.1 148,695 + IAI47_19590 0.82 -1.7 148,695 + IAI47_19590 0.82 +1.3 148,696 - IAI47_19590 0.82 +0.2 148,696 - IAI47_19590 0.82 -2.0 148,742 + IAI47_19590 0.87 -0.4 148,742 + IAI47_19590 0.87 +1.1 148,743 - IAI47_19590 0.87 +2.1 148,743 - IAI47_19590 0.87 +1.0 148,743 - IAI47_19590 0.87 +0.4 148,743 - IAI47_19590 0.87 -0.5 148,766 + IAI47_19590 0.90 -0.5 148,766 + IAI47_19590 0.90 -0.8 148,767 - IAI47_19590 0.90 +0.1 148,767 - IAI47_19590 0.90 -0.3 148,767 - IAI47_19590 0.90 -0.2 148,767 - IAI47_19590 0.90 -0.4 148,768 + IAI47_19590 0.90 -0.3 148,768 + IAI47_19590 0.90 -2.3 148,768 + IAI47_19590 0.90 +0.7 148,769 - +1.7 148,842 + +0.9 148,842 + +1.2 148,856 + -0.4 148,857 - +1.1 148,857 - -0.2 148,857 - -0.6 148,878 - -1.2 148,909 + -0.5 148,909 + -0.9 148,909 + +0.1 148,909 + -0.1 148,909 + +1.2 148,910 - +0.3 148,910 - +0.4 148,910 - -0.8 148,910 - -1.3 149,069 - IAI47_19595 0.24 -0.6 149,179 + IAI47_19595 0.39 -1.3 149,180 - IAI47_19595 0.39 -0.5 149,333 + IAI47_19595 0.59 -0.2 149,381 + IAI47_19595 0.65 -1.2 149,382 - IAI47_19595 0.66 -0.7 149,394 + IAI47_19595 0.67 +0.1 149,394 + IAI47_19595 0.67 +0.3 149,394 + IAI47_19595 0.67 -0.1 149,394 + IAI47_19595 0.67 -0.6 149,394 + IAI47_19595 0.67 +1.2 149,394 + IAI47_19595 0.67 +0.7 149,394 + IAI47_19595 0.67 +0.3 149,394 + IAI47_19595 0.67 +0.8 149,395 - IAI47_19595 0.67 +0.7 149,395 - IAI47_19595 0.67 +2.5 149,481 + IAI47_19595 0.79 +1.8 149,481 + IAI47_19595 0.79 +0.3 149,481 + IAI47_19595 0.79 -0.6 149,481 + IAI47_19595 0.79 +3.0 149,482 - IAI47_19595 0.79 +1.2 149,482 - IAI47_19595 0.79 -0.5 149,490 + IAI47_19595 0.80 +0.7 149,490 + IAI47_19595 0.80 -1.7 149,490 + IAI47_19595 0.80 -0.2 149,491 - IAI47_19595 0.80 -0.5 149,491 - IAI47_19595 0.80 +0.2 149,515 + IAI47_19595 0.83 +0.1 149,515 + IAI47_19595 0.83 -2.5 149,516 - IAI47_19595 0.83 +2.0 149,516 - IAI47_19595 0.83 +0.7 149,554 + IAI47_19595 0.88 -0.2 149,554 + IAI47_19595 0.88 -0.1 149,554 + IAI47_19595 0.88 +1.1 149,555 - IAI47_19595 0.88 -0.1 149,605 + -0.3 149,605 + +0.3 149,605 + +0.2 149,606 - -0.5 149,606 - -0.8 149,606 - -0.5 149,656 + -0.5 149,656 + -0.5 149,656 + +1.2 149,657 - -0.1 149,657 - +0.9 149,686 + +1.0 149,686 + -0.6 149,686 + -0.5 149,686 + +0.1 149,687 - -0.5 149,687 - +0.9 149,689 + +0.2 149,728 + IAI47_19600 0.12 -0.1 149,728 + IAI47_19600 0.12 -0.7
Or see this region's nucleotide sequence