Strain Fitness in Pantoea sp. MT58 around IAI47_18700

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
3,987,727	+		IAI47_18695	0.23	-1.3
3,987,728	-		IAI47_18695	0.23	-0.3
3,987,728	-		IAI47_18695	0.23	-0.3
3,987,776	+		IAI47_18695	0.30	+1.3
3,987,788	+		IAI47_18695	0.31	-0.2
3,987,788	+		IAI47_18695	0.31	-0.7
3,987,788	+		IAI47_18695	0.31	+0.5
3,987,788	+		IAI47_18695	0.31	+0.5
3,987,788	+		IAI47_18695	0.31	+1.5
3,987,789	-		IAI47_18695	0.32	+2.7
3,987,789	-		IAI47_18695	0.32	+0.2
3,987,789	-		IAI47_18695	0.32	-0.6
3,987,789	-		IAI47_18695	0.32	+1.1
3,987,878	+		IAI47_18695	0.44	-1.4
3,987,878	+		IAI47_18695	0.44	-2.5
3,987,879	-		IAI47_18695	0.44	+1.7
3,987,932	-		IAI47_18695	0.51	+1.0
3,987,932	-		IAI47_18695	0.51	-0.3
3,987,985	-		IAI47_18695	0.59	+0.5
3,987,985	-		IAI47_18695	0.59	-0.1
3,988,014	-		IAI47_18695	0.63	-1.6
3,988,025	+		IAI47_18695	0.64	+1.8
3,988,025	+		IAI47_18695	0.64	+0.1
3,988,026	-		IAI47_18695	0.65	-0.5
3,988,026	-		IAI47_18695	0.65	+0.5
3,988,026	-		IAI47_18695	0.65	-0.7
3,988,026	-		IAI47_18695	0.65	-2.5
3,988,026	-		IAI47_18695	0.65	-0.8
3,988,027	+		IAI47_18695	0.65	-0.1
3,988,028	-		IAI47_18695	0.65	-0.1
3,988,028	-		IAI47_18695	0.65	+0.7
3,988,028	-		IAI47_18695	0.65	+0.7
3,988,028	-		IAI47_18695	0.65	+0.3
3,988,028	-		IAI47_18695	0.65	-0.5
3,988,075	+		IAI47_18695	0.71	-0.0
3,988,196	+		IAI47_18695	0.88	+1.1
3,988,196	+		IAI47_18695	0.88	+0.5
3,988,196	+		IAI47_18695	0.88	+0.9
3,988,196	+		IAI47_18695	0.88	-1.4
3,988,196	+		IAI47_18695	0.88	+0.7
3,988,197	-		IAI47_18695	0.88	-1.6
3,988,197	-		IAI47_18695	0.88	+0.3
3,988,197	-		IAI47_18695	0.88	+0.7
3,988,197	-		IAI47_18695	0.88	-0.6
3,988,206	+		IAI47_18695	0.90	-1.6
3,988,207	-		IAI47_18695	0.90	+2.3
3,988,281	+				-0.5
3,988,288	+				+0.6
3,988,288	+				+0.6
3,988,288	+				+0.4
3,988,288	+				+0.6
3,988,289	-				+1.3
3,988,289	-				-0.2
3,988,289	-				-1.5
3,988,289	-				-0.5
3,988,289	-				-0.9
3,988,294	+				-0.2
3,988,300	+				+0.5
3,988,300	+				+0.7
3,988,300	+				+0.7
3,988,300	+				-1.4
3,988,300	+				+0.3
3,988,301	-				+0.4
3,988,301	-				+0.3
3,988,301	-				-0.0
3,988,301	-				-0.2
3,988,330	+				-0.9
3,988,330	+				-0.0
3,988,330	+				-0.5
3,988,330	+				+0.9
3,988,330	+				+1.5
3,988,330	+				-0.1
3,988,331	-				-0.8
3,988,331	-				+0.1
3,988,412	-				-0.3
3,988,412	-				-0.7
3,988,413	+				+0.3
3,988,415	+				+1.2
3,988,416	-				+0.4
3,988,434	+				-1.6
3,988,434	+				+0.7
3,988,434	+				-0.9
3,988,435	-				-0.5
3,988,455	+				+0.9
3,988,456	-				-0.3
3,988,463	+				-0.2
3,988,464	-				+0.1
3,988,464	-				-0.1
3,988,495	+				+0.4
3,988,495	+				-0.7
3,988,495	+				+0.1
3,988,495	+				-0.9
3,988,549	+				-0.1
3,988,550	-				+0.7
3,988,562	-				-0.3
3,988,562	-				-0.1
3,988,607	+				+1.9
3,988,607	+				+0.1
3,988,607	+				+0.5
3,988,608	-				-0.0
3,988,608	-				-0.4
3,988,608	-				+0.4
3,988,622	+				-0.2
3,988,622	+				+0.1
3,988,622	+				+1.3
3,988,622	+				+1.2
3,988,622	+				-0.1
3,988,622	+				+2.0
3,988,622	+				+0.5
3,988,623	-				+0.2
3,988,623	-				+0.0
3,988,623	-				-0.7
3,988,623	-				+0.7
3,988,623	-				+0.5
3,988,623	-				-0.5
3,988,623	-				+0.7
3,988,623	-				+0.1
3,988,623	-				-2.5
3,988,623	-				-0.5
3,988,626	+				+1.0
3,988,627	+				+2.0
3,988,627	+				-0.6
3,988,627	+				+0.5
3,988,627	+				+0.1
3,988,627	+				+0.4
3,988,627	+				+0.7
3,988,627	+				-1.0
3,988,627	+				-0.9
3,988,627	+				-0.6
3,988,627	+				+1.0
3,988,627	+				-0.1
3,988,627	+				-0.5
3,988,627	+				-2.1
3,988,628	-				-0.1
3,988,628	-				+0.3
3,988,628	-				+0.4
3,988,628	-				+0.7
3,988,628	-				-0.3
3,988,628	-				+0.9
3,988,628	-				+0.9
3,988,628	-				+0.7
3,988,628	-				-1.4
3,988,628	-				-1.0
3,988,628	-				-0.2
3,988,628	-				+0.1
3,988,628	-				+0.5
3,988,630	+				-0.7
3,988,630	+				-0.1
3,988,630	+				-0.3
3,988,630	+				+0.3
3,988,630	+				-1.0
3,988,631	-				-0.3
3,988,631	-				+0.7
3,988,631	-				+0.1
3,988,631	-				+0.7
3,988,631	-				-0.3
3,988,631	-				+1.9
3,988,631	-				-0.6
3,988,680	+				-0.7
3,988,680	+				+0.7
3,988,681	-				+0.0
3,988,711	+				-0.3
3,988,711	+				-0.5
3,988,711	+				-0.7
3,988,711	+				-0.7
3,988,712	-				+1.1
3,988,712	-				+0.1
3,988,712	-				-0.9
3,988,712	-				-0.2
3,988,712	-				+1.1
3,988,712	-				+0.3
3,988,712	-				+2.8
3,988,712	-				-0.9
3,988,737	+				+0.0
3,988,737	+				-0.1
3,988,737	+				+0.5
3,988,737	+				-0.0
3,988,737	+				-0.7
3,988,737	+				+0.1
3,988,738	-				+1.0
3,988,762	+				+0.8
3,988,762	+				+0.0
3,988,762	+				-0.0
3,988,762	+				-0.4
3,988,762	+				+0.6
3,988,763	-				+0.3
3,988,763	-				-0.9
3,988,765	+				-1.4
3,988,765	+				-0.1
3,988,765	+				-0.1
3,988,765	+				+1.5
3,988,765	+				+0.3
3,988,765	+				+1.1
3,988,765	+				+0.3
3,988,765	+				+1.7
3,988,766	-				+0.4
3,988,766	-				+0.6
3,988,766	-				-0.0
3,988,766	-				-1.3
3,988,766	-				+1.1
3,988,766	-				-0.5
3,988,766	-				-0.1
3,988,766	-				-1.0
3,988,766	-				+0.0
3,988,766	-				+0.7
3,988,766	-				+2.0
3,988,804	+				-1.3
3,988,804	+				-0.6
3,988,805	-				+1.3
3,988,805	-				-1.0
3,988,822	+				-0.2
3,988,823	-				+0.4
3,988,883	+				+0.9
3,988,884	-				+0.2
3,988,884	-				-1.9
3,988,884	-				+1.1
3,988,884	-				-0.1
3,988,909	+		IAI47_18700	0.10	+0.6
3,988,960	+		IAI47_18700	0.13	-0.4
3,988,961	-		IAI47_18700	0.13	+0.7
3,988,961	-		IAI47_18700	0.13	+0.7
3,988,990	+		IAI47_18700	0.14	+0.2
3,988,991	-		IAI47_18700	0.14	-0.4
3,989,044	+		IAI47_18700	0.17	+0.6
3,989,044	+		IAI47_18700	0.17	+0.3
3,989,044	+		IAI47_18700	0.17	-0.2
3,989,044	+		IAI47_18700	0.17	-0.5
3,989,044	+		IAI47_18700	0.17	+0.1
3,989,044	+		IAI47_18700	0.17	+0.8
3,989,045	-		IAI47_18700	0.17	-0.3
3,989,045	-		IAI47_18700	0.17	-0.0
3,989,102	-		IAI47_18700	0.20	-1.1
3,989,120	-		IAI47_18700	0.21	-3.0
3,989,122	+		IAI47_18700	0.21	-0.9
3,989,172	+		IAI47_18700	0.24	-1.0
3,989,172	+		IAI47_18700	0.24	+0.3
3,989,402	+		IAI47_18700	0.36	+1.5
3,989,402	+		IAI47_18700	0.36	-0.3
3,989,402	+		IAI47_18700	0.36	-0.5
3,989,402	+		IAI47_18700	0.36	-0.6
3,989,402	+		IAI47_18700	0.36	-1.6
3,989,402	+		IAI47_18700	0.36	+2.0
3,989,402	+		IAI47_18700	0.36	+0.5
3,989,402	+		IAI47_18700	0.36	-0.1
3,989,402	+		IAI47_18700	0.36	+0.1
3,989,402	+		IAI47_18700	0.36	+0.7
3,989,403	-		IAI47_18700	0.36	-0.4
3,989,403	-		IAI47_18700	0.36	+0.1
3,989,403	-		IAI47_18700	0.36	+0.4
3,989,403	-		IAI47_18700	0.36	+0.2
3,989,403	-		IAI47_18700	0.36	+1.3
3,989,403	-		IAI47_18700	0.36	+0.3
3,989,422	+		IAI47_18700	0.37	+0.1
3,989,423	-		IAI47_18700	0.37	-0.0
3,989,423	-		IAI47_18700	0.37	+1.5
3,989,428	+		IAI47_18700	0.37	+0.7
3,989,428	+		IAI47_18700	0.37	+0.1
3,989,429	-		IAI47_18700	0.37	+0.9
3,989,429	-		IAI47_18700	0.37	+1.3
3,989,429	-		IAI47_18700	0.37	-0.6
3,989,455	+		IAI47_18700	0.38	+1.9
3,989,455	+		IAI47_18700	0.38	+1.1
3,989,455	+		IAI47_18700	0.38	+0.4
3,989,456	-		IAI47_18700	0.38	-0.0
3,989,486	+		IAI47_18700	0.40	+0.6
3,989,487	-		IAI47_18700	0.40	-1.1
3,989,487	-		IAI47_18700	0.40	+0.4
3,989,487	-		IAI47_18700	0.40	-0.2
3,989,495	+		IAI47_18700	0.40	-0.3
3,989,495	+		IAI47_18700	0.40	+1.1
3,989,496	-		IAI47_18700	0.41	-0.9
3,989,496	-		IAI47_18700	0.41	+0.6
3,989,496	-		IAI47_18700	0.41	-1.2
3,989,645	+		IAI47_18700	0.48	+1.7
3,989,645	+		IAI47_18700	0.48	-0.2
3,989,645	+		IAI47_18700	0.48	-0.8
3,989,645	+		IAI47_18700	0.48	-0.0
3,989,646	-		IAI47_18700	0.48	+0.1
3,989,646	-		IAI47_18700	0.48	-0.5
3,989,646	-		IAI47_18700	0.48	+0.2
3,989,646	-		IAI47_18700	0.48	+0.9
3,989,704	+		IAI47_18700	0.51	-0.2
3,989,728	+		IAI47_18700	0.53	+2.3
3,989,863	+		IAI47_18700	0.59	+0.6
3,989,920	+		IAI47_18700	0.62	-0.9
3,989,921	-		IAI47_18700	0.62	+1.0
3,989,966	-		IAI47_18700	0.65	-1.3
3,990,007	+		IAI47_18700	0.67	-0.2
3,990,007	+		IAI47_18700	0.67	+0.7
3,990,008	-		IAI47_18700	0.67	+0.1
3,990,008	-		IAI47_18700	0.67	+0.7
3,990,035	-		IAI47_18700	0.68	+1.4
3,990,035	-		IAI47_18700	0.68	-0.7
3,990,073	+		IAI47_18700	0.70	+0.5
3,990,074	-		IAI47_18700	0.70	-1.6
3,990,095	+		IAI47_18700	0.71	+0.1
3,990,095	+		IAI47_18700	0.71	+1.7
3,990,095	+		IAI47_18700	0.71	-0.1
3,990,095	+		IAI47_18700	0.71	+0.6
3,990,096	-		IAI47_18700	0.72	+0.1
3,990,128	-		IAI47_18700	0.73	+1.6
3,990,179	+		IAI47_18700	0.76	-0.1
3,990,179	+		IAI47_18700	0.76	+0.7
3,990,179	+		IAI47_18700	0.76	+0.7
3,990,180	-		IAI47_18700	0.76	+2.3
3,990,180	-		IAI47_18700	0.76	-0.6
3,990,180	-		IAI47_18700	0.76	+0.4
3,990,180	-		IAI47_18700	0.76	+2.0
3,990,205	+		IAI47_18700	0.77	-0.5
3,990,206	-		IAI47_18700	0.77	-0.9
3,990,220	+		IAI47_18700	0.78	+0.1
3,990,220	+		IAI47_18700	0.78	-1.0
3,990,220	+		IAI47_18700	0.78	+2.0
3,990,221	-		IAI47_18700	0.78	+0.7
3,990,221	-		IAI47_18700	0.78	+1.1
3,990,299	+		IAI47_18700	0.82	-0.1
3,990,299	+		IAI47_18700	0.82	-0.3
3,990,299	+		IAI47_18700	0.82	-0.4
3,990,299	+		IAI47_18700	0.82	+1.9
3,990,299	+		IAI47_18700	0.82	+0.6
3,990,299	+		IAI47_18700	0.82	-1.1
3,990,300	-		IAI47_18700	0.82	+0.4
3,990,300	-		IAI47_18700	0.82	+0.3
3,990,300	-		IAI47_18700	0.82	-0.8
3,990,303	+		IAI47_18700	0.82	-0.9
3,990,303	+		IAI47_18700	0.82	+0.1
3,990,303	+		IAI47_18700	0.82	-0.3
3,990,303	+		IAI47_18700	0.82	+1.3
3,990,303	+		IAI47_18700	0.82	+0.6
3,990,303	+		IAI47_18700	0.82	+0.5
3,990,303	+		IAI47_18700	0.82	-2.6
3,990,303	+		IAI47_18700	0.82	-0.2
3,990,304	-		IAI47_18700	0.82	-0.4
3,990,304	-		IAI47_18700	0.82	+0.7
3,990,304	-		IAI47_18700	0.82	+1.0
3,990,304	-		IAI47_18700	0.82	-0.7
3,990,304	-		IAI47_18700	0.82	-0.3
3,990,314	+		IAI47_18700	0.83	+0.3
3,990,314	+		IAI47_18700	0.83	-0.3
3,990,314	+		IAI47_18700	0.83	-0.1
3,990,314	+		IAI47_18700	0.83	+0.5
3,990,314	+		IAI47_18700	0.83	-0.1
3,990,314	+		IAI47_18700	0.83	+0.4
3,990,314	+		IAI47_18700	0.83	+0.6
3,990,315	-		IAI47_18700	0.83	-0.3
3,990,315	-		IAI47_18700	0.83	-0.3
3,990,315	-		IAI47_18700	0.83	-0.1
3,990,356	+		IAI47_18700	0.85	+0.4
3,990,356	+		IAI47_18700	0.85	+0.1
3,990,356	+		IAI47_18700	0.85	-0.6
3,990,356	+		IAI47_18700	0.85	-0.3
3,990,356	+		IAI47_18700	0.85	+0.7
3,990,499	+				-0.1
3,990,499	+				-0.4
3,990,499	+				-0.8
3,990,514	+				-0.3
3,990,514	+				+0.3
3,990,515	-				-1.3
3,990,515	-				-0.8
3,990,536	-				+0.1
3,990,536	-				-1.6
3,990,644	+				+0.2
3,990,644	+				-0.0
3,990,645	-				+0.5
3,990,728	-				+0.7
3,990,728	-				-1.6
3,990,728	-				-0.9
3,990,728	-				-0.6
3,990,741	+				-1.5
3,990,752	+				+0.7
3,990,753	-				-1.6
3,990,753	-				-1.3
3,990,753	-				-1.7
3,990,787	-				+0.7
3,990,797	+				-2.5
3,990,797	+				-2.1
3,990,798	-				-0.6
3,990,813	+				-2.9
3,990,877	+		IAI47_18705	0.12	-2.2
3,990,878	-		IAI47_18705	0.12	-1.3
3,990,878	-		IAI47_18705	0.12	-1.5
3,990,878	-		IAI47_18705	0.12	+0.1
3,990,922	-		IAI47_18705	0.16	-3.8
3,990,938	+		IAI47_18705	0.17	-2.2
3,990,990	+		IAI47_18705	0.22	-2.9
3,990,991	-		IAI47_18705	0.22	-1.9
3,991,023	+		IAI47_18705	0.24	+0.3
3,991,023	+		IAI47_18705	0.24	-1.1
3,991,024	-		IAI47_18705	0.25	-1.6
3,991,024	-		IAI47_18705	0.25	-0.9
3,991,024	-		IAI47_18705	0.25	-0.6
3,991,072	-		IAI47_18705	0.29	-2.5
3,991,085	+		IAI47_18705	0.30	-1.6
3,991,085	+		IAI47_18705	0.30	-2.6
3,991,085	+		IAI47_18705	0.30	-2.9
3,991,085	+		IAI47_18705	0.30	-0.6
3,991,085	+		IAI47_18705	0.30	-3.8
3,991,085	+		IAI47_18705	0.30	-1.6
3,991,085	+		IAI47_18705	0.30	-0.3
3,991,085	+		IAI47_18705	0.30	-0.3
3,991,086	-		IAI47_18705	0.30	-1.2
3,991,086	-		IAI47_18705	0.30	-2.6
3,991,089	+		IAI47_18705	0.30	-3.2
3,991,089	+		IAI47_18705	0.30	-0.3
3,991,089	+		IAI47_18705	0.30	-2.6
3,991,089	+		IAI47_18705	0.30	-1.9
3,991,090	-		IAI47_18705	0.30	-1.7
3,991,090	-		IAI47_18705	0.30	-3.0
3,991,091	-		IAI47_18705	0.30	-3.5
3,991,107	+		IAI47_18705	0.32	-2.0
3,991,107	+		IAI47_18705	0.32	+1.3
3,991,107	+		IAI47_18705	0.32	-2.0
3,991,108	-		IAI47_18705	0.32	-0.6
3,991,108	-		IAI47_18705	0.32	-0.7
3,991,165	+		IAI47_18705	0.37	-2.1
3,991,165	+		IAI47_18705	0.37	-2.7
3,991,165	+		IAI47_18705	0.37	-1.3
3,991,166	-		IAI47_18705	0.37	-1.7
3,991,308	+		IAI47_18705	0.49	-3.0
3,991,308	+		IAI47_18705	0.49	-1.3
3,991,308	+		IAI47_18705	0.49	-3.0
3,991,308	+		IAI47_18705	0.49	-0.9
3,991,309	-		IAI47_18705	0.49	-0.3
3,991,309	-		IAI47_18705	0.49	-1.3
3,991,374	+		IAI47_18705	0.55	-2.3
3,991,375	-		IAI47_18705	0.55	-1.5
3,991,415	-		IAI47_18705	0.59	-0.9
3,991,481	+		IAI47_18705	0.64	-1.5
3,991,514	+		IAI47_18705	0.67	-1.5
3,991,521	+		IAI47_18705	0.68	-2.9
3,991,522	-		IAI47_18705	0.68	-1.6
3,991,522	-		IAI47_18705	0.68	-3.2
3,991,522	-		IAI47_18705	0.68	-0.6
3,991,522	-		IAI47_18705	0.68	-0.3
3,991,558	+		IAI47_18705	0.71	-0.3
3,991,558	+		IAI47_18705	0.71	-0.8
3,991,558	+		IAI47_18705	0.71	-2.5
3,991,558	+		IAI47_18705	0.71	-1.6
3,991,558	+		IAI47_18705	0.71	-1.9
3,991,558	+		IAI47_18705	0.71	-1.0
3,991,558	+		IAI47_18705	0.71	-3.7
3,991,558	+		IAI47_18705	0.71	-2.6
3,991,558	+		IAI47_18705	0.71	-0.3
3,991,559	-		IAI47_18705	0.71	-2.1
3,991,559	-		IAI47_18705	0.71	-2.9
3,991,594	+		IAI47_18705	0.74	-1.7
3,991,595	-		IAI47_18705	0.74	-0.9
3,991,620	-		IAI47_18705	0.76	-1.5
3,991,620	-		IAI47_18705	0.76	-0.5
3,991,639	-		IAI47_18705	0.78	-3.2