Strain Fitness in Pantoea sp. MT58 around IAI47_18385

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
3,911,494	+		IAI47_18380	0.17	+0.0
3,911,494	+		IAI47_18380	0.17	-1.0
3,911,495	-		IAI47_18380	0.17	-0.2
3,911,495	-		IAI47_18380	0.17	+0.7
3,911,495	-		IAI47_18380	0.17	-0.1
3,911,512	-		IAI47_18380	0.19	-0.6
3,911,662	+		IAI47_18380	0.33	-1.6
3,911,662	+		IAI47_18380	0.33	+0.2
3,911,662	+		IAI47_18380	0.33	+0.6
3,911,662	+		IAI47_18380	0.33	-0.5
3,911,663	-		IAI47_18380	0.33	-0.4
3,911,663	-		IAI47_18380	0.33	+0.3
3,911,663	-		IAI47_18380	0.33	-1.2
3,911,694	+		IAI47_18380	0.36	-0.6
3,911,694	+		IAI47_18380	0.36	-0.3
3,911,694	+		IAI47_18380	0.36	+0.1
3,911,694	+		IAI47_18380	0.36	+1.1
3,911,694	+		IAI47_18380	0.36	+0.7
3,911,694	+		IAI47_18380	0.36	-0.8
3,911,695	-		IAI47_18380	0.36	+0.1
3,911,695	-		IAI47_18380	0.36	-0.5
3,911,695	-		IAI47_18380	0.36	+0.4
3,911,695	-		IAI47_18380	0.36	-1.1
3,911,695	-		IAI47_18380	0.36	+1.2
3,911,697	+		IAI47_18380	0.36	-0.5
3,911,705	+		IAI47_18380	0.37	+0.7
3,911,705	+		IAI47_18380	0.37	-1.6
3,911,705	+		IAI47_18380	0.37	+1.1
3,911,705	+		IAI47_18380	0.37	-0.2
3,911,706	-		IAI47_18380	0.37	+0.2
3,911,706	-		IAI47_18380	0.37	-0.3
3,911,706	-		IAI47_18380	0.37	-2.1
3,911,814	-		IAI47_18380	0.47	-0.3
3,911,932	+		IAI47_18380	0.58	+3.1
3,911,933	-		IAI47_18380	0.58	+0.6
3,912,111	+		IAI47_18380	0.75	-0.6
3,912,111	+		IAI47_18380	0.75	+0.1
3,912,212	+		IAI47_18380	0.85	+0.1
3,912,213	-		IAI47_18380	0.85	+1.9
3,912,238	-		IAI47_18380	0.87	+0.3
3,912,274	-				-0.2
3,912,298	+				+0.3
3,912,298	+				-1.5
3,912,332	-				+0.8
3,912,387	-				+0.9
3,912,387	-				+0.4
3,912,387	-				-2.5
3,912,413	-				+1.3
3,912,473	+				-2.1
3,912,486	+				-0.3
3,912,487	-				-0.6
3,912,497	+				-0.3
3,912,498	-				-0.7
3,912,503	+				-1.3
3,912,503	+				-2.0
3,912,503	+				-0.3
3,912,503	+				-2.3
3,912,503	+				-0.6
3,912,503	+				-1.9
3,912,503	+				+0.0
3,912,503	+				-1.3
3,912,503	+				+1.5
3,912,504	-				-0.5
3,912,504	-				+1.9
3,912,504	-				-0.9
3,912,504	-				-1.2
3,912,504	-				-1.9
3,912,504	-				-1.3
3,912,504	-				-1.6
3,912,504	-				-1.3
3,912,504	-				+1.3
3,912,504	-				-1.9
3,912,504	-				+1.5
3,912,504	-				-0.5
3,912,576	+		IAI47_18385	0.11	-1.9
3,912,577	-		IAI47_18385	0.11	-0.9
3,912,597	-		IAI47_18385	0.13	-0.5
3,912,597	-		IAI47_18385	0.13	-1.0
3,912,628	+		IAI47_18385	0.16	-0.7
3,912,628	+		IAI47_18385	0.16	-1.3
3,912,628	+		IAI47_18385	0.16	+0.2
3,912,628	+		IAI47_18385	0.16	-0.2
3,912,675	+		IAI47_18385	0.21	-0.3
3,912,675	+		IAI47_18385	0.21	-1.4
3,912,675	+		IAI47_18385	0.21	-1.0
3,912,675	+		IAI47_18385	0.21	+0.5
3,912,676	-		IAI47_18385	0.21	-0.3
3,912,676	-		IAI47_18385	0.21	-0.4
3,912,682	-		IAI47_18385	0.22	-1.6
3,912,682	-		IAI47_18385	0.22	-0.3
3,912,682	-		IAI47_18385	0.22	-0.8
3,912,736	-		IAI47_18385	0.28	-1.3
3,912,810	+		IAI47_18385	0.35	-2.1
3,912,810	+		IAI47_18385	0.35	-0.4
3,912,810	+		IAI47_18385	0.35	-1.7
3,912,811	-		IAI47_18385	0.36	-0.9
3,912,873	+		IAI47_18385	0.42	-2.1
3,912,874	-		IAI47_18385	0.42	-2.9
3,912,911	+		IAI47_18385	0.46	-0.6
3,912,911	+		IAI47_18385	0.46	-1.5
3,912,911	+		IAI47_18385	0.46	-1.2
3,912,911	+		IAI47_18385	0.46	-0.3
3,912,912	-		IAI47_18385	0.46	-0.5
3,912,912	-		IAI47_18385	0.46	+0.3
3,912,912	-		IAI47_18385	0.46	-0.9
3,912,968	+		IAI47_18385	0.52	-0.5
3,912,968	+		IAI47_18385	0.52	-0.7
3,912,968	+		IAI47_18385	0.52	-1.3
3,912,968	+		IAI47_18385	0.52	-1.3
3,912,968	+		IAI47_18385	0.52	+0.1
3,912,968	+		IAI47_18385	0.52	-0.7
3,912,968	+		IAI47_18385	0.52	-1.6
3,912,968	+		IAI47_18385	0.52	+0.3
3,912,968	+		IAI47_18385	0.52	-1.2
3,912,969	-		IAI47_18385	0.52	-1.6
3,912,969	-		IAI47_18385	0.52	-3.2
3,912,969	-		IAI47_18385	0.52	+1.2
3,912,969	-		IAI47_18385	0.52	+0.7
3,913,074	+		IAI47_18385	0.63	-1.2
3,913,075	-		IAI47_18385	0.63	+0.0
3,913,075	-		IAI47_18385	0.63	-1.7
3,913,075	-		IAI47_18385	0.63	-0.7
3,913,079	+		IAI47_18385	0.64	-2.7
3,913,079	+		IAI47_18385	0.64	-0.3
3,913,080	-		IAI47_18385	0.64	-1.3
3,913,080	-		IAI47_18385	0.64	-2.3
3,913,116	+		IAI47_18385	0.68	-1.1
3,913,116	+		IAI47_18385	0.68	-0.3
3,913,116	+		IAI47_18385	0.68	-0.7
3,913,116	+		IAI47_18385	0.68	-0.1
3,913,116	+		IAI47_18385	0.68	+0.7
3,913,116	+		IAI47_18385	0.68	-0.9
3,913,116	+		IAI47_18385	0.68	-1.4
3,913,116	+		IAI47_18385	0.68	-0.5
3,913,116	+		IAI47_18385	0.68	-0.7
3,913,116	+		IAI47_18385	0.68	-1.6
3,913,116	+		IAI47_18385	0.68	-0.3
3,913,116	+		IAI47_18385	0.68	-0.3
3,913,116	+		IAI47_18385	0.68	+0.9
3,913,117	-		IAI47_18385	0.68	-1.6
3,913,117	-		IAI47_18385	0.68	-1.0
3,913,117	-		IAI47_18385	0.68	-1.2
3,913,118	+		IAI47_18385	0.68	+0.1
3,913,118	+		IAI47_18385	0.68	-1.9
3,913,152	+		IAI47_18385	0.71	-1.1
3,913,152	+		IAI47_18385	0.71	-1.3
3,913,152	+		IAI47_18385	0.71	-1.6
3,913,152	+		IAI47_18385	0.71	-1.9
3,913,152	+		IAI47_18385	0.71	-2.1
3,913,153	-		IAI47_18385	0.71	+0.1
3,913,153	-		IAI47_18385	0.71	+2.7
3,913,153	-		IAI47_18385	0.71	+0.3
3,913,153	-		IAI47_18385	0.71	-0.5
3,913,153	-		IAI47_18385	0.71	-0.9
3,913,153	-		IAI47_18385	0.71	-0.9
3,913,153	-		IAI47_18385	0.71	+0.3
3,913,158	+		IAI47_18385	0.72	-0.7
3,913,158	+		IAI47_18385	0.72	+1.3
3,913,158	+		IAI47_18385	0.72	-0.3
3,913,180	+		IAI47_18385	0.74	-1.3
3,913,184	+		IAI47_18385	0.75	-0.4
3,913,184	+		IAI47_18385	0.75	+0.0
3,913,184	+		IAI47_18385	0.75	-1.3
3,913,185	-		IAI47_18385	0.75	-0.3
3,913,203	+		IAI47_18385	0.77	+1.2
3,913,203	+		IAI47_18385	0.77	-0.3
3,913,203	+		IAI47_18385	0.77	-0.9
3,913,203	+		IAI47_18385	0.77	+0.2
3,913,203	+		IAI47_18385	0.77	+0.4
3,913,203	+		IAI47_18385	0.77	-1.5
3,913,203	+		IAI47_18385	0.77	-0.6
3,913,204	-		IAI47_18385	0.77	-2.3
3,913,204	-		IAI47_18385	0.77	+0.4
3,913,204	-		IAI47_18385	0.77	-1.6
3,913,204	-		IAI47_18385	0.77	-1.2
3,913,329	+		IAI47_18385	0.90	-2.1
3,913,330	-				-1.6
3,913,330	-				-0.9
3,913,330	-				-2.6
3,913,411	-				-0.3
3,913,425	+				-1.9
3,913,426	-				-1.9
3,913,431	+				-0.8
3,913,431	+				-1.3
3,913,431	+				+0.1
3,913,431	+				-0.2
3,913,431	+				-3.0
3,913,431	+				-0.9
3,913,432	-				-1.3
3,913,432	-				+0.0
3,913,432	-				-0.5
3,913,432	-				-0.6
3,913,432	-				-1.3
3,913,432	-				-1.4
3,913,432	-				-2.1
3,913,448	+				-0.3
3,913,448	+				-1.0
3,913,449	-				-2.3
3,913,449	-				-2.5
3,913,449	-				+1.3
3,913,522	+				+0.7
3,913,523	-				-0.3
3,913,523	-				-1.6
3,913,577	+				-0.9
3,913,592	-				+0.5
3,913,597	+				-1.0
3,913,599	+				-1.3
3,913,599	+				-2.1
3,913,599	+				+1.2
3,913,599	+				-0.1
3,913,600	-				-1.0
3,913,600	-				-1.3
3,913,600	-				+1.7
3,913,600	-				+0.7
3,913,605	+				-2.1
3,913,605	+				-0.9
3,913,605	+				+1.7
3,913,605	+				-2.1
3,913,605	+				-0.6
3,913,605	+				+0.7
3,913,605	+				-1.5
3,913,605	+				-1.0
3,913,605	+				+0.1
3,913,605	+				+0.1
3,913,605	+				-2.6
3,913,605	+				-2.1
3,913,606	-				+0.6
3,913,606	-				-1.1
3,913,606	-				+0.7
3,913,606	-				+1.2
3,913,606	-				-0.0
3,913,606	-				-1.6
3,913,606	-				+1.1
3,913,606	-				-0.2
3,913,606	-				-2.1
3,913,612	+				+0.4
3,913,612	+				+0.0
3,913,612	+				-0.9
3,913,612	+				-0.3
3,913,613	-				+0.3
3,913,613	-				+0.9
3,913,613	-				-0.5
3,913,613	-				-1.9
3,913,621	+				-2.4
3,913,679	+				+1.3
3,913,679	+				-2.1
3,913,679	+				+1.0
3,913,679	+				+1.1
3,913,679	+				-2.6
3,913,680	-				-0.6
3,913,680	-				-0.4
3,913,680	-				-1.9
3,913,680	-				-1.1
3,913,680	-				-0.5
3,913,680	-				+0.8
3,913,682	+				-0.9
3,913,683	-				+0.2
3,913,697	-				+0.4
3,913,697	-				-0.0
3,913,729	+				+0.9
3,913,729	+				+0.5
3,913,730	-				-0.3
3,913,730	-				+1.5
3,913,730	-				+0.7
3,913,750	+				+1.0
3,913,750	+				+0.4
3,913,750	+				-0.3
3,913,750	+				-0.2
3,913,751	-				-0.3
3,914,014	+		IAI47_18390	0.13	+0.1
3,914,015	-		IAI47_18390	0.13	+0.3
3,914,015	-		IAI47_18390	0.13	-1.3
3,914,024	+		IAI47_18390	0.14	+1.0
3,914,024	+		IAI47_18390	0.14	-0.2
3,914,024	+		IAI47_18390	0.14	-0.9
3,914,024	+		IAI47_18390	0.14	+1.0
3,914,024	+		IAI47_18390	0.14	-1.8
3,914,025	-		IAI47_18390	0.14	+0.1
3,914,025	-		IAI47_18390	0.14	+0.5
3,914,025	-		IAI47_18390	0.14	-2.6
3,914,029	+		IAI47_18390	0.14	+0.7
3,914,029	+		IAI47_18390	0.14	+0.7
3,914,029	+		IAI47_18390	0.14	-0.3
3,914,030	-		IAI47_18390	0.14	+2.0
3,914,030	-		IAI47_18390	0.14	-2.0
3,914,051	-		IAI47_18390	0.15	+0.2
3,914,051	-		IAI47_18390	0.15	-0.3
3,914,051	-		IAI47_18390	0.15	+0.1
3,914,082	+		IAI47_18390	0.16	-0.3
3,914,092	+		IAI47_18390	0.17	+0.1
3,914,093	-		IAI47_18390	0.17	+2.7
3,914,093	-		IAI47_18390	0.17	-0.3
3,914,093	-		IAI47_18390	0.17	+1.5
3,914,093	-		IAI47_18390	0.17	-1.7
3,914,093	-		IAI47_18390	0.17	-0.9
3,914,190	-		IAI47_18390	0.21	+0.1
3,914,329	+		IAI47_18390	0.28	+0.3
3,914,410	+		IAI47_18390	0.32	-0.3
3,914,410	+		IAI47_18390	0.32	+0.3
3,914,410	+		IAI47_18390	0.32	+0.0
3,914,410	+		IAI47_18390	0.32	+0.2
3,914,410	+		IAI47_18390	0.32	-0.1
3,914,411	-		IAI47_18390	0.32	-1.3
3,914,411	-		IAI47_18390	0.32	+1.5
3,914,411	-		IAI47_18390	0.32	+1.7
3,914,411	-		IAI47_18390	0.32	-0.9