Strain Fitness in Pantoea sp. MT58 around IAI47_17250

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
3,656,442	-				+0.3
3,656,492	-				-2.0
3,656,492	-				+0.5
3,656,492	-				-0.3
3,656,503	+				-0.3
3,656,503	+				-0.1
3,656,503	+				+0.6
3,656,512	+				+1.5
3,656,512	+				-2.6
3,656,512	+				-0.4
3,656,513	-				-0.6
3,656,513	-				+1.1
3,656,542	+				-1.6
3,656,543	-				-0.9
3,656,543	-				+1.0
3,656,543	-				-0.1
3,656,588	-				-0.9
3,656,615	-				-0.6
3,656,646	+		IAI47_17250	0.11	-1.4
3,656,646	+		IAI47_17250	0.11	-1.3
3,656,647	-		IAI47_17250	0.12	-1.1
3,656,647	-		IAI47_17250	0.12	-1.9
3,656,668	+		IAI47_17250	0.13	+1.0
3,656,668	+		IAI47_17250	0.13	-1.4
3,656,668	+		IAI47_17250	0.13	+0.0
3,656,668	+		IAI47_17250	0.13	-1.7
3,656,668	+		IAI47_17250	0.13	-0.3
3,656,668	+		IAI47_17250	0.13	-1.6
3,656,668	+		IAI47_17250	0.13	+0.2
3,656,668	+		IAI47_17250	0.13	+1.2
3,656,668	+		IAI47_17250	0.13	-0.1
3,656,669	-		IAI47_17250	0.13	+0.1
3,656,669	-		IAI47_17250	0.13	+0.7
3,656,669	-		IAI47_17250	0.13	+1.7
3,656,669	-		IAI47_17250	0.13	+0.7
3,656,669	-		IAI47_17250	0.13	-1.1
3,656,717	+		IAI47_17250	0.18	-1.4
3,656,718	-		IAI47_17250	0.18	+0.6
3,656,719	+		IAI47_17250	0.18	-1.3
3,656,719	+		IAI47_17250	0.18	-0.9
3,656,719	+		IAI47_17250	0.18	-0.4
3,656,720	-		IAI47_17250	0.18	-0.5
3,656,720	-		IAI47_17250	0.18	-2.5
3,656,720	-		IAI47_17250	0.18	-0.1
3,656,740	+		IAI47_17250	0.20	-1.3
3,656,740	+		IAI47_17250	0.20	-1.9
3,656,740	+		IAI47_17250	0.20	+1.7
3,656,741	-		IAI47_17250	0.20	-2.1
3,656,741	-		IAI47_17250	0.20	-0.6
3,656,741	-		IAI47_17250	0.20	+0.1
3,656,741	-		IAI47_17250	0.20	-0.9
3,656,777	+		IAI47_17250	0.23	-1.9
3,656,777	+		IAI47_17250	0.23	-1.9
3,656,777	+		IAI47_17250	0.23	-0.0
3,656,777	+		IAI47_17250	0.23	-0.7
3,656,777	+		IAI47_17250	0.23	-2.4
3,656,777	+		IAI47_17250	0.23	-0.7
3,656,778	-		IAI47_17250	0.23	-2.1
3,656,778	-		IAI47_17250	0.23	-0.6
3,656,779	+		IAI47_17250	0.23	+0.5
3,656,779	+		IAI47_17250	0.23	-0.7
3,656,779	+		IAI47_17250	0.23	+0.3
3,656,779	+		IAI47_17250	0.23	-0.6
3,656,779	+		IAI47_17250	0.23	+0.7
3,656,779	+		IAI47_17250	0.23	-0.4
3,656,779	+		IAI47_17250	0.23	-0.9
3,656,780	-		IAI47_17250	0.23	-1.0
3,656,780	-		IAI47_17250	0.23	-1.7
3,656,780	-		IAI47_17250	0.23	+0.1
3,656,780	-		IAI47_17250	0.23	-0.9
3,656,780	-		IAI47_17250	0.23	-1.7
3,656,780	-		IAI47_17250	0.23	-0.0
3,656,780	-		IAI47_17250	0.23	+0.7
3,656,780	-		IAI47_17250	0.23	+0.0
3,656,780	-		IAI47_17250	0.23	-0.1
3,656,780	-		IAI47_17250	0.23	-1.3
3,656,780	-		IAI47_17250	0.23	-2.1
3,656,780	-		IAI47_17250	0.23	-1.9
3,656,780	-		IAI47_17250	0.23	-1.0
3,656,780	-		IAI47_17250	0.23	-0.9
3,656,780	-		IAI47_17250	0.23	-1.6
3,656,822	+		IAI47_17250	0.27	-0.4
3,656,873	+		IAI47_17250	0.32	+0.7
3,656,921	+		IAI47_17250	0.36	-1.3
3,656,921	+		IAI47_17250	0.36	-0.0
3,656,922	-		IAI47_17250	0.36	-0.9
3,656,966	-		IAI47_17250	0.40	+1.3
3,657,048	+		IAI47_17250	0.47	-0.0
3,657,049	-		IAI47_17250	0.47	-0.6
3,657,049	-		IAI47_17250	0.47	-1.6
3,657,049	-		IAI47_17250	0.47	+2.2
3,657,097	+		IAI47_17250	0.51	+0.7
3,657,177	+		IAI47_17250	0.59	-1.3
3,657,178	-		IAI47_17250	0.59	-1.0
3,657,195	-		IAI47_17250	0.60	-1.6
3,657,242	+		IAI47_17250	0.64	-0.4
3,657,243	-		IAI47_17250	0.64	-0.1
3,657,317	+		IAI47_17250	0.71	-0.9
3,657,317	+		IAI47_17250	0.71	-1.4
3,657,317	+		IAI47_17250	0.71	-0.7
3,657,317	+		IAI47_17250	0.71	-0.7
3,657,317	+		IAI47_17250	0.71	+0.4
3,657,318	-		IAI47_17250	0.71	-0.3
3,657,318	-		IAI47_17250	0.71	-0.3
3,657,318	-		IAI47_17250	0.71	-0.5
3,657,318	-		IAI47_17250	0.71	-0.7
3,657,359	+		IAI47_17250	0.75	-0.7
3,657,359	+		IAI47_17250	0.75	-1.4
3,657,359	+		IAI47_17250	0.75	+0.1
3,657,359	+		IAI47_17250	0.75	-0.3
3,657,359	+		IAI47_17250	0.75	-0.3
3,657,360	-		IAI47_17250	0.75	-2.7
3,657,360	-		IAI47_17250	0.75	-1.7
3,657,416	+		IAI47_17250	0.80	-0.3
3,657,416	+		IAI47_17250	0.80	+0.0
3,657,416	+		IAI47_17250	0.80	-0.7
3,657,416	+		IAI47_17250	0.80	+1.0
3,657,416	+		IAI47_17250	0.80	+0.1
3,657,416	+		IAI47_17250	0.80	-0.9
3,657,416	+		IAI47_17250	0.80	+1.1
3,657,416	+		IAI47_17250	0.80	-1.4
3,657,416	+		IAI47_17250	0.80	-0.3
3,657,416	+		IAI47_17250	0.80	-2.6
3,657,416	+		IAI47_17250	0.80	-1.1
3,657,417	-		IAI47_17250	0.80	+0.1
3,657,417	-		IAI47_17250	0.80	-0.7
3,657,417	-		IAI47_17250	0.80	-0.3
3,657,417	-		IAI47_17250	0.80	-2.3
3,657,417	-		IAI47_17250	0.80	+0.6
3,657,417	-		IAI47_17250	0.80	-1.7
3,657,417	-		IAI47_17250	0.80	+0.5
3,657,417	-		IAI47_17250	0.80	-2.7
3,657,417	-		IAI47_17250	0.80	-0.9
3,657,417	-		IAI47_17250	0.80	-0.9
3,657,417	-		IAI47_17250	0.80	-0.1
3,657,417	-		IAI47_17250	0.80	-0.0
3,657,417	-		IAI47_17250	0.80	-0.9
3,657,417	-		IAI47_17250	0.80	-0.9
3,657,417	-		IAI47_17250	0.80	-0.7
3,657,417	-		IAI47_17250	0.80	+0.7
3,657,418	+		IAI47_17250	0.80	-0.6
3,657,418	+		IAI47_17250	0.80	-0.7
3,657,418	+		IAI47_17250	0.80	-0.3
3,657,418	+		IAI47_17250	0.80	-0.3
3,657,418	+		IAI47_17250	0.80	-1.6
3,657,418	+		IAI47_17250	0.80	+0.6
3,657,418	+		IAI47_17250	0.80	-1.3
3,657,418	+		IAI47_17250	0.80	+0.1
3,657,418	+		IAI47_17250	0.80	-1.6
3,657,418	+		IAI47_17250	0.80	-1.1
3,657,418	+		IAI47_17250	0.80	+1.7
3,657,418	+		IAI47_17250	0.80	-0.2
3,657,419	-		IAI47_17250	0.80	-0.1
3,657,419	-		IAI47_17250	0.80	+2.3
3,657,419	-		IAI47_17250	0.80	-0.8
3,657,419	-		IAI47_17250	0.80	-0.0
3,657,419	-		IAI47_17250	0.80	-1.3
3,657,419	-		IAI47_17250	0.80	-1.3
3,657,419	-		IAI47_17250	0.80	+0.1
3,657,429	+		IAI47_17250	0.81	-1.6
3,657,429	+		IAI47_17250	0.81	-2.3
3,657,430	-		IAI47_17250	0.81	+0.7
3,657,557	+				+0.7
3,657,558	-				+0.3
3,657,573	+				+1.4
3,657,573	+				-1.7
3,657,573	+				+3.5
3,657,573	+				-1.4
3,657,573	+				-0.6
3,657,573	+				-0.9
3,657,573	+				-1.3
3,657,573	+				+1.6
3,657,574	-				-0.0
3,657,574	-				-0.6
3,657,616	+				-0.9
3,657,617	-				+0.1
3,657,680	+				-0.3
3,657,680	+				-0.4
3,657,681	-				+0.6
3,657,709	+				+0.4
3,657,709	+				-0.3
3,657,709	+				-0.4
3,657,709	+				-0.9
3,657,710	-				+1.5
3,657,710	-				+0.9
3,657,710	-				-1.0
3,657,710	-				-0.7
3,657,710	-				+0.1
3,657,714	+				-2.4
3,657,714	+				-1.1
3,657,714	+				-0.3
3,657,714	+				+2.3
3,657,714	+				-0.6
3,657,714	+				-2.0
3,657,714	+				-0.4
3,657,715	-				+0.9
3,657,715	-				+2.0
3,657,715	-				-0.2
3,657,715	-				+0.7
3,657,715	-				-0.4
3,657,745	+				+0.4
3,657,745	+				-0.6
3,657,745	+				+1.3
3,657,758	+				-0.7
3,657,758	+				+1.2
3,657,760	+				+0.1
3,657,760	+				+0.4
3,657,760	+				+0.4
3,657,760	+				+0.1
3,657,760	+				+0.1
3,657,760	+				-0.3
3,657,761	-				+0.3
3,657,761	-				+0.7
3,657,761	-				+0.9
3,657,761	-				+0.7
3,657,761	-				+0.7
3,657,761	-				+0.1
3,657,761	-				-1.0
3,657,761	-				-0.3
3,657,767	+				+0.1
3,657,767	+				+0.5
3,657,767	+				-0.7
3,657,767	+				-1.2
3,657,791	+				-0.4
3,657,791	+				+0.1
3,658,112	-		IAI47_17255	0.72	-0.6
3,658,171	+		IAI47_17255	0.87	+0.3
3,658,172	-		IAI47_17255	0.87	+2.7
3,658,172	-		IAI47_17255	0.87	-0.6
3,658,222	+				-1.3
3,658,223	-				-1.2
3,658,297	+				-0.6
3,658,297	+				+0.2
3,658,298	-				-1.0
3,658,298	-				-0.1
3,658,330	+				-2.0
3,658,330	+				+0.3
3,658,330	+				+0.0
3,658,330	+				+1.1
3,658,331	-				-0.4
3,658,331	-				+1.3
3,658,331	-				+1.5
3,658,331	-				-0.3
3,658,331	-				-0.5
3,658,358	+				-0.5
3,658,367	-				+0.7
3,658,367	-				-0.0
3,658,377	-				+1.7
3,658,539	-		IAI47_17260	0.15	+3.0
3,658,539	-		IAI47_17260	0.15	+0.1
3,658,553	+		IAI47_17260	0.16	+0.7
3,658,586	+		IAI47_17260	0.18	-0.3
3,658,628	+		IAI47_17260	0.21	-0.7
3,658,628	+		IAI47_17260	0.21	-0.6
3,658,628	+		IAI47_17260	0.21	-0.6
3,658,629	-		IAI47_17260	0.21	+0.7
3,658,629	-		IAI47_17260	0.21	-0.4
3,658,629	-		IAI47_17260	0.21	-0.9
3,658,629	-		IAI47_17260	0.21	+1.0