Strain Fitness in Pantoea sp. MT58 around IAI47_10370

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
2,196,146	+		IAI47_10365	0.31	+0.8
2,196,147	-		IAI47_10365	0.31	+0.4
2,196,147	-		IAI47_10365	0.31	+1.0
2,196,147	-		IAI47_10365	0.31	+0.4
2,196,147	-		IAI47_10365	0.31	-0.4
2,196,148	+		IAI47_10365	0.31	+0.8
2,196,148	+		IAI47_10365	0.31	-0.3
2,196,148	+		IAI47_10365	0.31	+0.6
2,196,148	+		IAI47_10365	0.31	+1.2
2,196,148	+		IAI47_10365	0.31	+1.1
2,196,148	+		IAI47_10365	0.31	+0.3
2,196,148	+		IAI47_10365	0.31	+0.3
2,196,149	-		IAI47_10365	0.31	-0.1
2,196,149	-		IAI47_10365	0.31	-0.8
2,196,208	-		IAI47_10365	0.37	-0.2
2,196,253	+		IAI47_10365	0.41	-1.5
2,196,254	-		IAI47_10365	0.42	+0.0
2,196,254	-		IAI47_10365	0.42	+1.2
2,196,256	+		IAI47_10365	0.42	-0.6
2,196,256	+		IAI47_10365	0.42	+2.3
2,196,256	+		IAI47_10365	0.42	+0.8
2,196,256	+		IAI47_10365	0.42	-0.6
2,196,257	-		IAI47_10365	0.42	-0.2
2,196,257	-		IAI47_10365	0.42	+0.9
2,196,266	-		IAI47_10365	0.43	-1.2
2,196,266	-		IAI47_10365	0.43	+0.3
2,196,426	+		IAI47_10365	0.59	+0.4
2,196,426	+		IAI47_10365	0.59	+0.7
2,196,426	+		IAI47_10365	0.59	-0.6
2,196,426	+		IAI47_10365	0.59	-0.1
2,196,426	+		IAI47_10365	0.59	+1.6
2,196,427	-		IAI47_10365	0.59	-0.4
2,196,427	-		IAI47_10365	0.59	+0.4
2,196,427	-		IAI47_10365	0.59	+0.2
2,196,427	-		IAI47_10365	0.59	-0.4
2,196,427	-		IAI47_10365	0.59	-0.4
2,196,493	+		IAI47_10365	0.66	+1.2
2,196,493	+		IAI47_10365	0.66	+0.6
2,196,493	+		IAI47_10365	0.66	-0.8
2,196,494	-		IAI47_10365	0.66	+1.3
2,196,494	-		IAI47_10365	0.66	+0.8
2,196,494	-		IAI47_10365	0.66	+0.6
2,196,494	-		IAI47_10365	0.66	+0.6
2,196,494	-		IAI47_10365	0.66	+0.1
2,196,494	-		IAI47_10365	0.66	-0.4
2,196,494	-		IAI47_10365	0.66	-0.4
2,196,494	-		IAI47_10365	0.66	+0.0
2,196,494	-		IAI47_10365	0.66	-0.5
2,196,562	+		IAI47_10365	0.72	+0.3
2,196,587	-		IAI47_10365	0.75	-0.8
2,196,833	+				-1.3
2,196,833	+				+0.0
2,196,834	-				-1.2
2,196,846	+				+0.0
2,196,926	+				+0.6
2,196,926	+				-0.8
2,196,927	-				-1.7
2,196,927	-				-0.7
2,197,074	+				+0.9
2,197,075	-				+0.1
2,197,075	-				-0.8
2,197,075	-				+1.3
2,197,117	+				-0.4
2,197,117	+				-0.5
2,197,118	-				+0.5
2,197,118	-				+0.6
2,197,118	-				+0.0
2,197,118	-				+0.8
2,197,126	-				-0.4
2,197,126	-				-0.4
2,197,270	+		IAI47_10370	0.13	-0.8
2,197,270	+		IAI47_10370	0.13	-0.8
2,197,271	-		IAI47_10370	0.13	+0.3
2,197,271	-		IAI47_10370	0.13	+0.3
2,197,271	-		IAI47_10370	0.13	+0.2
2,197,271	-		IAI47_10370	0.13	-0.4
2,197,271	-		IAI47_10370	0.13	+0.6
2,197,273	+		IAI47_10370	0.14	+0.3
2,197,274	-		IAI47_10370	0.14	-0.8
2,197,282	+		IAI47_10370	0.14	-0.4
2,197,282	+		IAI47_10370	0.14	+2.6
2,197,283	-		IAI47_10370	0.15	-1.9
2,197,283	-		IAI47_10370	0.15	-1.4
2,197,308	-		IAI47_10370	0.17	-0.2
2,197,335	+		IAI47_10370	0.19	+0.4
2,197,336	-		IAI47_10370	0.20	-1.1
2,197,429	+		IAI47_10370	0.28	-1.4
2,197,429	+		IAI47_10370	0.28	-0.6
2,197,429	+		IAI47_10370	0.28	-0.5
2,197,429	+		IAI47_10370	0.28	-0.3
2,197,429	+		IAI47_10370	0.28	-0.9
2,197,430	-		IAI47_10370	0.29	-0.1
2,197,430	-		IAI47_10370	0.29	+1.3
2,197,430	-		IAI47_10370	0.29	-0.5
2,197,430	-		IAI47_10370	0.29	-0.6
2,197,430	-		IAI47_10370	0.29	-0.4
2,197,463	+		IAI47_10370	0.32	+0.4
2,197,463	+		IAI47_10370	0.32	+0.4
2,197,463	+		IAI47_10370	0.32	-0.5
2,197,463	+		IAI47_10370	0.32	-2.9
2,197,463	+		IAI47_10370	0.32	+0.6
2,197,464	-		IAI47_10370	0.32	-0.8
2,197,464	-		IAI47_10370	0.32	+0.0
2,197,525	+		IAI47_10370	0.38	+0.0
2,197,526	-		IAI47_10370	0.38	-1.9
2,197,546	+		IAI47_10370	0.40	+0.1
2,197,546	+		IAI47_10370	0.40	+0.6
2,197,592	+		IAI47_10370	0.44	+0.0
2,197,592	+		IAI47_10370	0.44	-1.0
2,197,593	-		IAI47_10370	0.44	+0.4
2,197,593	-		IAI47_10370	0.44	-0.0
2,197,593	-		IAI47_10370	0.44	-1.1
2,197,595	+		IAI47_10370	0.44	-0.2
2,197,655	-		IAI47_10370	0.50	-0.2
2,197,655	-		IAI47_10370	0.50	+0.3
2,197,698	-		IAI47_10370	0.54	+0.0
2,197,738	+		IAI47_10370	0.58	-0.1
2,197,739	-		IAI47_10370	0.58	-0.8
2,197,913	+		IAI47_10370	0.75	-0.3
2,197,913	+		IAI47_10370	0.75	-1.6
2,197,964	+		IAI47_10370	0.80	-0.7
2,197,971	-		IAI47_10370	0.80	-0.9
2,197,988	+		IAI47_10370	0.82	-2.1
2,198,143	+				-1.5
2,198,163	+				+1.5
2,198,164	-				+0.8
2,198,164	-				-0.5
2,198,164	-				-0.8
2,198,211	+				-1.0
2,198,211	+				-0.8
2,198,211	+				+0.3
2,198,212	-				+0.5
2,198,212	-				+0.1
2,198,212	-				-0.8
2,198,217	+				-1.4
2,198,217	+				+0.6
2,198,217	+				+0.1
2,198,217	+				+0.2
2,198,218	-				+0.2
2,198,220	+				-0.1
2,198,221	-				+0.6
2,198,221	-				+1.2
2,198,221	-				-1.6
2,198,221	-				-0.4
2,198,221	-				+0.6
2,198,265	+				-1.6
2,198,265	+				-0.6
2,198,265	+				-0.2
2,198,266	-				-0.6
2,198,266	-				+0.4
2,198,266	-				-0.3
2,198,266	-				+0.6
2,198,266	-				-0.0
2,198,266	-				+0.2
2,198,384	+		IAI47_10375	0.14	+0.5
2,198,384	+		IAI47_10375	0.14	-0.3
2,198,385	-		IAI47_10375	0.14	-1.4
2,198,606	+		IAI47_10375	0.38	+2.6
2,198,606	+		IAI47_10375	0.38	-0.4
2,198,606	+		IAI47_10375	0.38	-0.0
2,198,607	-		IAI47_10375	0.38	-0.0
2,198,607	-		IAI47_10375	0.38	+0.2
2,198,607	-		IAI47_10375	0.38	-0.8
2,198,607	-		IAI47_10375	0.38	+1.1
2,198,623	+		IAI47_10375	0.40	+1.2
2,198,623	+		IAI47_10375	0.40	+0.6
2,198,624	-		IAI47_10375	0.40	+2.4
2,198,624	-		IAI47_10375	0.40	-1.1
2,198,653	-		IAI47_10375	0.43	-0.5
2,198,677	+		IAI47_10375	0.46	+0.4
2,198,677	+		IAI47_10375	0.46	+0.4
2,198,677	+		IAI47_10375	0.46	-0.7
2,198,677	+		IAI47_10375	0.46	+0.2
2,198,678	-		IAI47_10375	0.46	-1.2
2,198,678	-		IAI47_10375	0.46	+0.5
2,198,678	-		IAI47_10375	0.46	-1.2
2,198,678	-		IAI47_10375	0.46	+1.1
2,198,683	+		IAI47_10375	0.46	+1.4
2,198,736	+		IAI47_10375	0.52	-0.4
2,198,736	+		IAI47_10375	0.52	-0.3
2,198,737	-		IAI47_10375	0.52	-0.3
2,198,853	-		IAI47_10375	0.65	+0.6
2,198,870	+		IAI47_10375	0.67	+0.4
2,198,870	+		IAI47_10375	0.67	-0.3
2,198,871	-		IAI47_10375	0.67	-2.2
2,198,915	+		IAI47_10375	0.72	-0.4
2,198,915	+		IAI47_10375	0.72	+0.4
2,198,915	+		IAI47_10375	0.72	+0.6
2,198,916	-		IAI47_10375	0.72	+0.8
2,198,916	-		IAI47_10375	0.72	+0.2
2,198,916	-		IAI47_10375	0.72	+0.5
2,198,916	-		IAI47_10375	0.72	-0.1
2,198,916	-		IAI47_10375	0.72	+0.4
2,198,916	-		IAI47_10375	0.72	+0.6
2,198,918	+		IAI47_10375	0.72	-0.7
2,198,918	+		IAI47_10375	0.72	-0.2
2,198,918	+		IAI47_10375	0.72	+0.2
2,198,919	-		IAI47_10375	0.72	-0.2
2,198,919	-		IAI47_10375	0.72	-0.6
2,198,919	-		IAI47_10375	0.72	-0.4
2,199,000	+		IAI47_10375	0.81	-0.0
2,199,001	-		IAI47_10375	0.81	+0.4
2,199,006	+		IAI47_10375	0.82	+0.8
2,199,006	+		IAI47_10375	0.82	+0.1
2,199,006	+		IAI47_10375	0.82	+0.1
2,199,006	+		IAI47_10375	0.82	+0.0
2,199,026	+		IAI47_10375	0.84	-0.1
2,199,027	-		IAI47_10375	0.84	+0.9
2,199,123	-				+0.6
2,199,123	-				+0.9
2,199,158	-				-0.9
2,199,170	+				-0.6
2,199,170	+				-0.5
2,199,170	+				-0.8
2,199,170	+				-0.4
2,199,170	+				+0.2
2,199,170	+				+0.5
2,199,170	+				-0.7
2,199,171	-				-1.3
2,199,171	-				+0.0
2,199,171	-				-1.2
2,199,171	-				+1.0
2,199,171	-				-1.2
2,199,171	-				+0.2
2,199,171	-				+0.9
2,199,171	-				+1.8
2,199,174	+				-0.1
2,199,174	+				-1.7
2,199,174	+				+0.3
2,199,174	+				+0.4
2,199,174	+				-0.6
2,199,174	+				+0.2
2,199,175	-				+1.6
2,199,175	-				-0.0
2,199,175	-				+0.1