Strain Fitness in Pantoea sp. MT58 around IAI47_08045

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
1,697,745	+		IAI47_08035	0.47	+0.3
1,697,893	-				+1.5
1,697,893	-				-0.5
1,697,916	+				-0.1
1,697,916	+				-1.8
1,697,940	+				-0.7
1,697,968	+				+0.5
1,697,968	+				-0.4
1,697,968	+				-0.5
1,697,968	+				+0.5
1,697,968	+				+0.4
1,697,968	+				-0.7
1,697,969	-				+1.3
1,697,969	-				+1.3
1,697,969	-				-0.8
1,697,969	-				+2.5
1,697,969	-				-1.6
1,697,972	+				+0.4
1,697,972	+				-0.9
1,697,972	+				+0.4
1,697,972	+				+0.6
1,697,973	-				-0.8
1,697,973	-				-0.3
1,698,008	+				+1.1
1,698,008	+				-0.5
1,698,009	-				+0.5
1,698,009	-				+0.8
1,698,068	+				-0.0
1,698,069	-				+0.3
1,698,112	+		IAI47_08040	0.25	-0.6
1,698,112	+		IAI47_08040	0.25	+0.1
1,698,113	-		IAI47_08040	0.25	+0.1
1,698,113	-		IAI47_08040	0.25	-0.4
1,698,217	+		IAI47_08040	0.69	+0.1
1,698,223	-		IAI47_08040	0.72	+0.1
1,698,223	-		IAI47_08040	0.72	-0.6
1,698,250	+		IAI47_08040	0.83	+0.7
1,698,287	+				+0.4
1,698,287	+				-1.2
1,698,288	-				-1.5
1,698,288	-				+0.3
1,698,288	-				-0.7
1,698,318	+				+0.7
1,698,318	+				+0.2
1,698,319	-				-0.5
1,698,319	-				+1.8
1,698,320	+				-0.4
1,698,320	+				+1.4
1,698,320	+				+0.1
1,698,321	-				+1.3
1,698,321	-				+0.1
1,698,321	-				-1.1
1,698,321	-				-0.3
1,698,453	+				-2.3
1,698,453	+				-0.3
1,698,454	-				+0.1
1,698,454	-				+0.8
1,698,454	-				+0.2
1,698,454	-				-1.6
1,698,468	+				+0.1
1,698,468	+				-0.8
1,698,469	-				-0.9
1,698,510	+				-0.9
1,698,511	-				-0.5
1,698,511	-				-1.3
1,698,520	+				-0.8
1,698,521	-				+1.3
1,698,521	-				-0.5
1,698,576	-				-1.3
1,698,576	-				+0.1
1,698,638	+				+2.0
1,698,654	+				-1.0
1,698,654	+				-0.5
1,698,654	+				-0.4
1,698,675	+				+0.4
1,698,678	+				+0.7
1,698,679	-				+0.7
1,698,688	+				-0.5
1,698,688	+				-1.6
1,698,700	+				+0.4
1,698,873	+		IAI47_08045	0.31	+0.3
1,698,883	-		IAI47_08045	0.33	-1.6
1,698,885	-		IAI47_08045	0.33	-1.8
1,698,918	-		IAI47_08045	0.41	+1.1
1,699,061	-		IAI47_08045	0.72	-0.3
1,699,126	-		IAI47_08045	0.86	+0.7
1,699,183	-				-0.2
1,699,226	-				-0.1
1,699,257	+				+1.7
1,699,263	+				-1.9
1,699,269	+				-0.7
1,699,270	-				-0.1
1,699,270	-				-0.6
1,699,272	+		IAI47_08050	0.10	+0.1
1,699,274	+		IAI47_08050	0.10	+0.3
1,699,281	-		IAI47_08050	0.11	+0.0
1,699,283	+		IAI47_08050	0.12	-0.2
1,699,284	-		IAI47_08050	0.12	-0.3
1,699,286	-		IAI47_08050	0.12	-1.8
1,699,291	-		IAI47_08050	0.13	+0.5
1,699,291	-		IAI47_08050	0.13	-1.0
1,699,293	-		IAI47_08050	0.13	+1.2
1,699,293	-		IAI47_08050	0.13	-0.6
1,699,297	-		IAI47_08050	0.14	+0.3
1,699,301	+		IAI47_08050	0.15	+0.5
1,699,301	+		IAI47_08050	0.15	-0.3
1,699,302	-		IAI47_08050	0.15	-0.8
1,699,302	-		IAI47_08050	0.15	+1.0
1,699,302	-		IAI47_08050	0.15	+0.4
1,699,302	-		IAI47_08050	0.15	+0.7
1,699,302	-		IAI47_08050	0.15	+0.3
1,699,302	-		IAI47_08050	0.15	+0.1
1,699,302	-		IAI47_08050	0.15	+0.7
1,699,338	+		IAI47_08050	0.21	-1.1
1,699,341	+		IAI47_08050	0.21	+2.7
1,699,348	-		IAI47_08050	0.22	+1.4
1,699,375	+		IAI47_08050	0.27	+0.3
1,699,375	+		IAI47_08050	0.27	+2.3
1,699,376	-		IAI47_08050	0.27	+0.5
1,699,438	+		IAI47_08050	0.37	+0.7
1,699,438	+		IAI47_08050	0.37	-0.1
1,699,439	-		IAI47_08050	0.37	+1.3
1,699,439	-		IAI47_08050	0.37	-0.8
1,699,458	+		IAI47_08050	0.40	-0.3
1,699,458	+		IAI47_08050	0.40	-0.9
1,699,509	+		IAI47_08050	0.48	+0.2
1,699,552	-		IAI47_08050	0.55	+0.5
1,699,613	-		IAI47_08050	0.65	-0.3
1,699,632	+		IAI47_08050	0.68	+0.5
1,699,636	+		IAI47_08050	0.69	-1.2
1,699,636	+		IAI47_08050	0.69	-0.6
1,699,637	-		IAI47_08050	0.69	+0.6
1,699,637	-		IAI47_08050	0.69	+0.3
1,699,637	-		IAI47_08050	0.69	-0.3
1,699,676	-		IAI47_08050	0.75	-0.3
1,699,697	+		IAI47_08050	0.79	+0.1
1,699,710	-		IAI47_08050	0.81	+0.7
1,699,730	+		IAI47_08050	0.84	+0.8
1,699,731	-		IAI47_08050	0.84	-0.5
1,699,731	-		IAI47_08050	0.84	+0.4
1,699,756	-		IAI47_08050	0.88	+0.5
1,699,782	+				-0.3
1,699,879	+				+0.6
1,699,880	-				+0.1
1,699,880	-				-0.7
1,699,913	-				-0.6
1,699,918	-				+0.5
1,699,934	+				-0.3
1,699,935	-				+0.4
1,699,940	+				+0.9
1,699,940	+				+0.3
1,699,941	-				+0.7
1,699,946	+				-0.2
1,699,946	+				+0.3
1,699,969	+				-0.1
1,699,969	+				+1.8
1,699,970	-				-0.3
1,700,047	+				+1.4
1,700,085	-				-0.5
1,700,085	-				+0.3
1,700,109	-				-0.2
1,700,126	+				+0.7
1,700,126	+				+0.1
1,700,127	-				-0.7
1,700,127	-				+1.5
1,700,135	-				-0.8
1,700,160	+				+0.5
1,700,160	+				+1.0
1,700,161	-				-0.3
1,700,169	+				+0.1
1,700,169	+				-0.5
1,700,169	+				-1.9