Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04035 and IAI47_04040 are separated by 24 nucleotides IAI47_04040 and IAI47_04045 are separated by 34 nucleotides
IAI47_04035: IAI47_04035 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 843,333 to 844,433
_04035
IAI47_04040: IAI47_04040 - flap endonuclease Xni, at 844,458 to 845,213
_04040
IAI47_04045: IAI47_04045 - LOG family protein, at 845,248 to 846,612
_04045
Position (kb) 844
845
846 Strain fitness (log2 ratio) -2
-1
0
1
2 at 843.471 kb on + strand, within IAI47_04035 at 843.471 kb on + strand, within IAI47_04035 at 843.471 kb on + strand, within IAI47_04035 at 843.471 kb on + strand, within IAI47_04035 at 843.471 kb on + strand, within IAI47_04035 at 843.471 kb on + strand, within IAI47_04035 at 843.472 kb on - strand, within IAI47_04035 at 843.472 kb on - strand, within IAI47_04035 at 843.472 kb on - strand, within IAI47_04035 at 843.472 kb on - strand, within IAI47_04035 at 843.587 kb on + strand, within IAI47_04035 at 843.587 kb on + strand, within IAI47_04035 at 843.587 kb on + strand, within IAI47_04035 at 843.587 kb on + strand, within IAI47_04035 at 843.587 kb on + strand, within IAI47_04035 at 843.588 kb on - strand, within IAI47_04035 at 843.588 kb on - strand, within IAI47_04035 at 843.750 kb on + strand, within IAI47_04035 at 843.751 kb on - strand, within IAI47_04035 at 843.751 kb on - strand, within IAI47_04035 at 843.751 kb on - strand, within IAI47_04035 at 843.751 kb on - strand, within IAI47_04035 at 843.751 kb on - strand, within IAI47_04035 at 843.751 kb on - strand, within IAI47_04035 at 843.807 kb on + strand, within IAI47_04035 at 843.807 kb on + strand, within IAI47_04035 at 843.817 kb on - strand, within IAI47_04035 at 843.817 kb on - strand, within IAI47_04035 at 843.846 kb on + strand, within IAI47_04035 at 843.846 kb on + strand, within IAI47_04035 at 843.847 kb on - strand, within IAI47_04035 at 843.847 kb on - strand, within IAI47_04035 at 843.847 kb on - strand, within IAI47_04035 at 843.848 kb on + strand, within IAI47_04035 at 843.848 kb on + strand, within IAI47_04035 at 843.848 kb on + strand, within IAI47_04035 at 843.849 kb on - strand, within IAI47_04035 at 843.849 kb on - strand, within IAI47_04035 at 843.849 kb on - strand, within IAI47_04035 at 843.849 kb on - strand, within IAI47_04035 at 843.849 kb on - strand, within IAI47_04035 at 843.849 kb on - strand, within IAI47_04035 at 843.867 kb on - strand, within IAI47_04035 at 843.867 kb on - strand, within IAI47_04035 at 843.867 kb on - strand, within IAI47_04035 at 843.867 kb on - strand, within IAI47_04035 at 843.902 kb on + strand, within IAI47_04035 at 843.902 kb on + strand, within IAI47_04035 at 843.903 kb on - strand, within IAI47_04035 at 843.903 kb on - strand, within IAI47_04035 at 843.972 kb on + strand, within IAI47_04035 at 843.972 kb on + strand, within IAI47_04035 at 843.972 kb on + strand, within IAI47_04035 at 843.972 kb on + strand, within IAI47_04035 at 843.972 kb on + strand, within IAI47_04035 at 843.972 kb on + strand, within IAI47_04035 at 843.973 kb on - strand, within IAI47_04035 at 843.973 kb on - strand, within IAI47_04035 at 843.973 kb on - strand, within IAI47_04035 at 843.973 kb on - strand, within IAI47_04035 at 843.973 kb on - strand, within IAI47_04035 at 843.973 kb on - strand, within IAI47_04035 at 844.011 kb on + strand, within IAI47_04035 at 844.011 kb on + strand, within IAI47_04035 at 844.011 kb on + strand, within IAI47_04035 at 844.012 kb on - strand, within IAI47_04035 at 844.012 kb on - strand, within IAI47_04035 at 844.012 kb on - strand, within IAI47_04035 at 844.042 kb on - strand, within IAI47_04035 at 844.042 kb on - strand, within IAI47_04035 at 844.048 kb on + strand, within IAI47_04035 at 844.048 kb on + strand, within IAI47_04035 at 844.119 kb on - strand, within IAI47_04035 at 844.119 kb on - strand, within IAI47_04035 at 844.168 kb on + strand, within IAI47_04035 at 844.168 kb on + strand, within IAI47_04035 at 844.168 kb on + strand, within IAI47_04035 at 844.168 kb on + strand, within IAI47_04035 at 844.169 kb on - strand, within IAI47_04035 at 844.247 kb on + strand, within IAI47_04035 at 844.247 kb on + strand, within IAI47_04035 at 844.247 kb on + strand, within IAI47_04035 at 844.248 kb on - strand, within IAI47_04035 at 844.248 kb on - strand, within IAI47_04035 at 844.248 kb on - strand, within IAI47_04035 at 844.248 kb on - strand, within IAI47_04035 at 844.248 kb on - strand, within IAI47_04035 at 844.248 kb on - strand, within IAI47_04035 at 844.269 kb on + strand, within IAI47_04035 at 844.269 kb on + strand, within IAI47_04035 at 844.270 kb on - strand, within IAI47_04035 at 844.270 kb on - strand, within IAI47_04035 at 844.356 kb on + strand at 844.356 kb on + strand at 844.356 kb on + strand at 844.357 kb on - strand at 844.357 kb on - strand at 844.357 kb on - strand at 844.357 kb on - strand at 844.394 kb on + strand at 844.394 kb on + strand at 844.394 kb on + strand at 844.395 kb on - strand at 844.395 kb on - strand at 844.395 kb on - strand at 844.395 kb on - strand at 844.468 kb on + strand at 844.532 kb on + strand at 844.532 kb on + strand at 844.532 kb on + strand at 844.532 kb on + strand at 844.532 kb on + strand at 844.533 kb on - strand at 844.544 kb on + strand, within IAI47_04040 at 844.544 kb on + strand, within IAI47_04040 at 844.544 kb on + strand, within IAI47_04040 at 844.544 kb on + strand, within IAI47_04040 at 844.544 kb on + strand, within IAI47_04040 at 844.544 kb on + strand, within IAI47_04040 at 844.545 kb on - strand, within IAI47_04040 at 844.545 kb on - strand, within IAI47_04040 at 844.545 kb on - strand, within IAI47_04040 at 844.545 kb on - strand, within IAI47_04040 at 844.545 kb on - strand, within IAI47_04040 at 844.545 kb on - strand, within IAI47_04040 at 844.545 kb on - strand, within IAI47_04040 at 844.545 kb on - strand, within IAI47_04040 at 844.545 kb on - strand, within IAI47_04040 at 844.603 kb on + strand, within IAI47_04040 at 844.603 kb on + strand, within IAI47_04040 at 844.604 kb on - strand, within IAI47_04040 at 844.604 kb on - strand, within IAI47_04040 at 844.604 kb on - strand, within IAI47_04040 at 844.604 kb on - strand, within IAI47_04040 at 844.632 kb on + strand, within IAI47_04040 at 844.632 kb on + strand, within IAI47_04040 at 844.652 kb on + strand, within IAI47_04040 at 844.701 kb on + strand, within IAI47_04040 at 844.701 kb on + strand, within IAI47_04040 at 844.702 kb on - strand, within IAI47_04040 at 844.702 kb on - strand, within IAI47_04040 at 844.702 kb on - strand, within IAI47_04040 at 844.711 kb on + strand, within IAI47_04040 at 844.712 kb on - strand, within IAI47_04040 at 844.712 kb on - strand, within IAI47_04040 at 844.754 kb on + strand, within IAI47_04040 at 844.754 kb on + strand, within IAI47_04040 at 844.786 kb on + strand, within IAI47_04040 at 844.787 kb on - strand, within IAI47_04040 at 844.787 kb on - strand, within IAI47_04040 at 844.787 kb on - strand, within IAI47_04040 at 844.826 kb on - strand, within IAI47_04040 at 844.877 kb on + strand, within IAI47_04040 at 844.878 kb on - strand, within IAI47_04040 at 844.896 kb on + strand, within IAI47_04040 at 844.935 kb on + strand, within IAI47_04040 at 844.935 kb on + strand, within IAI47_04040 at 844.935 kb on + strand, within IAI47_04040 at 844.935 kb on + strand, within IAI47_04040 at 844.936 kb on - strand, within IAI47_04040 at 844.936 kb on - strand, within IAI47_04040 at 845.017 kb on + strand, within IAI47_04040 at 845.070 kb on + strand, within IAI47_04040 at 845.071 kb on - strand, within IAI47_04040 at 845.107 kb on - strand, within IAI47_04040 at 845.154 kb on + strand at 845.154 kb on + strand at 845.154 kb on + strand at 845.154 kb on + strand at 845.155 kb on - strand at 845.155 kb on - strand at 845.195 kb on + strand at 845.195 kb on + strand at 845.196 kb on - strand at 845.196 kb on - strand at 845.196 kb on - strand at 845.220 kb on - strand at 845.249 kb on + strand at 845.249 kb on + strand at 845.249 kb on + strand at 845.250 kb on - strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.276 kb on + strand at 845.277 kb on + strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.277 kb on - strand at 845.371 kb on - strand at 845.418 kb on + strand, within IAI47_04045 at 845.500 kb on - strand, within IAI47_04045 at 845.505 kb on + strand, within IAI47_04045 at 845.505 kb on + strand, within IAI47_04045 at 845.506 kb on - strand, within IAI47_04045 at 845.565 kb on + strand, within IAI47_04045 at 845.565 kb on + strand, within IAI47_04045 at 845.565 kb on + strand, within IAI47_04045 at 845.566 kb on - strand, within IAI47_04045 at 845.566 kb on - strand, within IAI47_04045 at 845.566 kb on - strand, within IAI47_04045 at 845.566 kb on - strand, within IAI47_04045 at 845.573 kb on + strand, within IAI47_04045 at 845.573 kb on + strand, within IAI47_04045 at 845.658 kb on + strand, within IAI47_04045 at 845.659 kb on - strand, within IAI47_04045 at 845.659 kb on - strand, within IAI47_04045 at 845.661 kb on + strand, within IAI47_04045 at 845.661 kb on + strand, within IAI47_04045 at 845.661 kb on + strand, within IAI47_04045 at 845.662 kb on - strand, within IAI47_04045 at 845.662 kb on - strand, within IAI47_04045 at 845.662 kb on - strand, within IAI47_04045 at 845.669 kb on + strand, within IAI47_04045 at 845.670 kb on - strand, within IAI47_04045 at 845.676 kb on + strand, within IAI47_04045 at 845.730 kb on - strand, within IAI47_04045 at 845.730 kb on - strand, within IAI47_04045 at 845.730 kb on - strand, within IAI47_04045 at 845.771 kb on - strand, within IAI47_04045 at 845.771 kb on - strand, within IAI47_04045 at 845.813 kb on + strand, within IAI47_04045 at 845.813 kb on + strand, within IAI47_04045 at 845.814 kb on - strand, within IAI47_04045 at 845.814 kb on - strand, within IAI47_04045 at 845.853 kb on + strand, within IAI47_04045 at 845.853 kb on + strand, within IAI47_04045 at 845.853 kb on + strand, within IAI47_04045 at 845.853 kb on + strand, within IAI47_04045 at 845.854 kb on - strand, within IAI47_04045 at 845.854 kb on - strand, within IAI47_04045 at 845.980 kb on - strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.116 kb on + strand, within IAI47_04045 at 846.116 kb on + strand, within IAI47_04045 at 846.117 kb on - strand, within IAI47_04045 at 846.117 kb on - strand, within IAI47_04045 at 846.117 kb on - strand, within IAI47_04045 at 846.122 kb on + strand, within IAI47_04045 at 846.123 kb on - strand, within IAI47_04045 at 846.160 kb on + strand, within IAI47_04045 at 846.160 kb on + strand, within IAI47_04045 at 846.160 kb on + strand, within IAI47_04045 at 846.161 kb on - strand, within IAI47_04045 at 846.161 kb on - strand, within IAI47_04045 at 846.161 kb on - strand, within IAI47_04045 at 846.161 kb on - strand, within IAI47_04045 at 846.201 kb on + strand, within IAI47_04045 at 846.202 kb on - strand, within IAI47_04045
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 843,471 + IAI47_04035 0.13 +0.7 843,471 + IAI47_04035 0.13 +0.5 843,471 + IAI47_04035 0.13 +0.3 843,471 + IAI47_04035 0.13 -0.3 843,471 + IAI47_04035 0.13 -0.5 843,471 + IAI47_04035 0.13 +0.2 843,472 - IAI47_04035 0.13 -0.3 843,472 - IAI47_04035 0.13 -1.5 843,472 - IAI47_04035 0.13 -0.0 843,472 - IAI47_04035 0.13 +1.3 843,587 + IAI47_04035 0.23 -2.1 843,587 + IAI47_04035 0.23 -0.6 843,587 + IAI47_04035 0.23 -2.7 843,587 + IAI47_04035 0.23 -0.0 843,587 + IAI47_04035 0.23 -0.3 843,588 - IAI47_04035 0.23 +1.7 843,588 - IAI47_04035 0.23 -1.2 843,750 + IAI47_04035 0.38 +0.3 843,751 - IAI47_04035 0.38 -0.8 843,751 - IAI47_04035 0.38 -1.1 843,751 - IAI47_04035 0.38 -0.6 843,751 - IAI47_04035 0.38 +0.9 843,751 - IAI47_04035 0.38 +0.2 843,751 - IAI47_04035 0.38 +0.1 843,807 + IAI47_04035 0.43 -0.1 843,807 + IAI47_04035 0.43 +0.4 843,817 - IAI47_04035 0.44 -1.7 843,817 - IAI47_04035 0.44 +0.3 843,846 + IAI47_04035 0.47 -0.9 843,846 + IAI47_04035 0.47 -0.2 843,847 - IAI47_04035 0.47 +0.3 843,847 - IAI47_04035 0.47 -0.4 843,847 - IAI47_04035 0.47 -0.9 843,848 + IAI47_04035 0.47 +0.3 843,848 + IAI47_04035 0.47 +0.9 843,848 + IAI47_04035 0.47 -0.1 843,849 - IAI47_04035 0.47 -1.0 843,849 - IAI47_04035 0.47 -0.1 843,849 - IAI47_04035 0.47 +0.2 843,849 - IAI47_04035 0.47 +0.5 843,849 - IAI47_04035 0.47 -0.4 843,849 - IAI47_04035 0.47 -1.1 843,867 - IAI47_04035 0.49 +1.3 843,867 - IAI47_04035 0.49 +1.2 843,867 - IAI47_04035 0.49 -0.9 843,867 - IAI47_04035 0.49 -0.1 843,902 + IAI47_04035 0.52 -0.9 843,902 + IAI47_04035 0.52 -0.3 843,903 - IAI47_04035 0.52 +0.2 843,903 - IAI47_04035 0.52 +0.1 843,972 + IAI47_04035 0.58 +0.7 843,972 + IAI47_04035 0.58 +1.2 843,972 + IAI47_04035 0.58 -0.9 843,972 + IAI47_04035 0.58 -1.3 843,972 + IAI47_04035 0.58 +0.4 843,972 + IAI47_04035 0.58 +1.3 843,973 - IAI47_04035 0.58 +0.2 843,973 - IAI47_04035 0.58 -0.3 843,973 - IAI47_04035 0.58 -0.1 843,973 - IAI47_04035 0.58 +1.4 843,973 - IAI47_04035 0.58 +0.1 843,973 - IAI47_04035 0.58 +0.2 844,011 + IAI47_04035 0.62 +1.0 844,011 + IAI47_04035 0.62 -0.9 844,011 + IAI47_04035 0.62 +0.6 844,012 - IAI47_04035 0.62 +0.7 844,012 - IAI47_04035 0.62 -0.6 844,012 - IAI47_04035 0.62 +1.7 844,042 - IAI47_04035 0.64 -1.4 844,042 - IAI47_04035 0.64 -0.8 844,048 + IAI47_04035 0.65 -0.3 844,048 + IAI47_04035 0.65 -2.7 844,119 - IAI47_04035 0.71 -0.7 844,119 - IAI47_04035 0.71 -0.8 844,168 + IAI47_04035 0.76 -0.3 844,168 + IAI47_04035 0.76 -0.5 844,168 + IAI47_04035 0.76 +0.2 844,168 + IAI47_04035 0.76 -0.1 844,169 - IAI47_04035 0.76 +0.1 844,247 + IAI47_04035 0.83 -0.3 844,247 + IAI47_04035 0.83 +0.8 844,247 + IAI47_04035 0.83 -0.4 844,248 - IAI47_04035 0.83 +0.9 844,248 - IAI47_04035 0.83 -0.9 844,248 - IAI47_04035 0.83 +0.7 844,248 - IAI47_04035 0.83 -0.3 844,248 - IAI47_04035 0.83 +1.5 844,248 - IAI47_04035 0.83 -0.2 844,269 + IAI47_04035 0.85 -0.3 844,269 + IAI47_04035 0.85 +0.2 844,270 - IAI47_04035 0.85 +1.3 844,270 - IAI47_04035 0.85 +0.3 844,356 + +0.2 844,356 + -1.3 844,356 + +0.0 844,357 - -1.1 844,357 - +0.3 844,357 - +1.4 844,357 - +0.9 844,394 + -0.8 844,394 + -1.1 844,394 + -0.0 844,395 - +0.1 844,395 - +0.3 844,395 - +1.0 844,395 - -0.5 844,468 + +1.2 844,532 + -0.7 844,532 + +0.7 844,532 + +2.4 844,532 + +0.9 844,532 + +0.3 844,533 - -0.2 844,544 + IAI47_04040 0.11 +0.3 844,544 + IAI47_04040 0.11 +0.2 844,544 + IAI47_04040 0.11 +1.1 844,544 + IAI47_04040 0.11 +0.9 844,544 + IAI47_04040 0.11 +0.9 844,544 + IAI47_04040 0.11 +0.7 844,545 - IAI47_04040 0.12 +0.9 844,545 - IAI47_04040 0.12 -1.1 844,545 - IAI47_04040 0.12 -0.7 844,545 - IAI47_04040 0.12 -0.8 844,545 - IAI47_04040 0.12 -0.3 844,545 - IAI47_04040 0.12 -0.7 844,545 - IAI47_04040 0.12 -0.0 844,545 - IAI47_04040 0.12 -1.1 844,545 - IAI47_04040 0.12 -0.9 844,603 + IAI47_04040 0.19 -1.9 844,603 + IAI47_04040 0.19 -0.5 844,604 - IAI47_04040 0.19 +1.4 844,604 - IAI47_04040 0.19 +0.5 844,604 - IAI47_04040 0.19 +1.3 844,604 - IAI47_04040 0.19 +1.2 844,632 + IAI47_04040 0.23 -0.5 844,632 + IAI47_04040 0.23 +0.7 844,652 + IAI47_04040 0.26 +0.1 844,701 + IAI47_04040 0.32 -1.0 844,701 + IAI47_04040 0.32 -0.9 844,702 - IAI47_04040 0.32 +1.1 844,702 - IAI47_04040 0.32 -0.9 844,702 - IAI47_04040 0.32 +0.1 844,711 + IAI47_04040 0.33 +0.5 844,712 - IAI47_04040 0.34 +0.7 844,712 - IAI47_04040 0.34 +0.7 844,754 + IAI47_04040 0.39 -1.5 844,754 + IAI47_04040 0.39 -0.3 844,786 + IAI47_04040 0.43 +0.4 844,787 - IAI47_04040 0.44 +0.0 844,787 - IAI47_04040 0.44 +1.2 844,787 - IAI47_04040 0.44 +1.1 844,826 - IAI47_04040 0.49 -2.7 844,877 + IAI47_04040 0.55 +0.7 844,878 - IAI47_04040 0.56 -0.2 844,896 + IAI47_04040 0.58 +0.0 844,935 + IAI47_04040 0.63 +0.4 844,935 + IAI47_04040 0.63 +1.9 844,935 + IAI47_04040 0.63 -0.3 844,935 + IAI47_04040 0.63 +1.7 844,936 - IAI47_04040 0.63 +0.5 844,936 - IAI47_04040 0.63 +0.7 845,017 + IAI47_04040 0.74 -1.0 845,070 + IAI47_04040 0.81 +0.8 845,071 - IAI47_04040 0.81 +1.5 845,107 - IAI47_04040 0.86 +0.7 845,154 + +1.7 845,154 + -0.1 845,154 + -0.8 845,154 + -0.7 845,155 - -1.0 845,155 - -0.1 845,195 + -1.2 845,195 + +0.0 845,196 - +0.7 845,196 - -0.1 845,196 - -0.4 845,220 - -1.5 845,249 + +0.9 845,249 + -0.3 845,249 + +0.1 845,250 - 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Or see this region's nucleotide sequence