Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03315 and IAI47_03320 are separated by 60 nucleotides IAI47_03320 and IAI47_03325 are separated by 488 nucleotides
IAI47_03315: IAI47_03315 - glycoside hydrolase family 31 protein, at 692,653 to 695,016
_03315
IAI47_03320: IAI47_03320 - non-heme ferritin, at 695,077 to 695,583
_03320
IAI47_03325: IAI47_03325 - hypothetical protein, at 696,072 to 696,740
_03325
Position (kb) 695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.120 kb on - strand, within IAI47_03315 at 694.147 kb on + strand, within IAI47_03315 at 694.148 kb on - strand, within IAI47_03315 at 694.192 kb on - strand, within IAI47_03315 at 694.227 kb on + strand, within IAI47_03315 at 694.336 kb on + strand, within IAI47_03315 at 694.396 kb on + strand, within IAI47_03315 at 694.396 kb on + strand, within IAI47_03315 at 694.397 kb on - strand, within IAI47_03315 at 694.397 kb on - strand, within IAI47_03315 at 694.397 kb on - strand, within IAI47_03315 at 694.397 kb on - strand, within IAI47_03315 at 694.402 kb on + strand, within IAI47_03315 at 694.403 kb on - strand, within IAI47_03315 at 694.403 kb on - strand, within IAI47_03315 at 694.403 kb on - strand, within IAI47_03315 at 694.403 kb on - strand, within IAI47_03315 at 694.486 kb on + strand, within IAI47_03315 at 694.487 kb on - strand, within IAI47_03315 at 694.487 kb on - strand, within IAI47_03315 at 694.506 kb on + strand, within IAI47_03315 at 694.506 kb on + strand, within IAI47_03315 at 694.506 kb on + strand, within IAI47_03315 at 694.506 kb on + strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.542 kb on - strand, within IAI47_03315 at 694.542 kb on - strand, within IAI47_03315 at 694.570 kb on + strand, within IAI47_03315 at 694.570 kb on + strand, within IAI47_03315 at 694.570 kb on + strand at 694.570 kb on + strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.597 kb on + strand, within IAI47_03315 at 694.598 kb on - strand, within IAI47_03315 at 694.598 kb on - strand, within IAI47_03315 at 694.598 kb on - strand, within IAI47_03315 at 694.598 kb on - strand, within IAI47_03315 at 694.614 kb on + strand, within IAI47_03315 at 694.615 kb on - strand, within IAI47_03315 at 694.781 kb on + strand at 694.781 kb on + strand at 694.782 kb on - strand at 694.782 kb on - strand at 694.782 kb on - strand at 694.853 kb on + strand at 694.853 kb on + strand at 694.946 kb on + strand at 694.946 kb on + strand at 694.946 kb on + strand at 694.947 kb on - strand at 694.947 kb on - strand at 694.989 kb on + strand at 695.025 kb on + strand at 695.025 kb on + strand at 695.025 kb on + strand at 695.025 kb on + strand at 695.026 kb on - strand at 695.026 kb on - strand at 695.026 kb on - strand at 695.045 kb on + strand at 695.045 kb on + strand at 695.045 kb on + strand at 695.046 kb on - strand at 695.046 kb on - strand at 695.046 kb on - strand at 695.071 kb on + strand at 695.071 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.078 kb on + strand at 695.119 kb on - strand at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.238 kb on + strand, within IAI47_03320 at 695.238 kb on + strand, within IAI47_03320 at 695.238 kb on + strand, within IAI47_03320 at 695.239 kb on - strand, within IAI47_03320 at 695.239 kb on - strand, within IAI47_03320 at 695.239 kb on - strand, within IAI47_03320 at 695.243 kb on + strand, within IAI47_03320 at 695.243 kb on + strand, within IAI47_03320 at 695.244 kb on - strand, within IAI47_03320 at 695.244 kb on - strand, within IAI47_03320 at 695.244 kb on - strand, within IAI47_03320 at 695.343 kb on + strand, within IAI47_03320 at 695.370 kb on + strand, within IAI47_03320 at 695.406 kb on - strand, within IAI47_03320 at 695.406 kb on - strand, within IAI47_03320 at 695.406 kb on - strand, within IAI47_03320 at 695.514 kb on - strand, within IAI47_03320 at 695.514 kb on - strand, within IAI47_03320 at 695.554 kb on + strand at 695.555 kb on - strand at 695.597 kb on + strand at 695.598 kb on - strand at 695.609 kb on - strand at 695.612 kb on + strand at 695.612 kb on + strand at 695.613 kb on - strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.621 kb on - strand at 695.621 kb on - strand at 695.621 kb on - strand at 695.621 kb on - strand at 695.621 kb on - strand at 695.634 kb on + strand at 695.634 kb on + strand at 695.635 kb on - strand at 695.635 kb on - strand at 695.635 kb on - strand at 695.653 kb on + strand at 695.654 kb on - strand at 695.654 kb on - strand at 695.677 kb on + strand at 695.678 kb on - strand at 695.683 kb on - strand at 695.683 kb on - strand at 695.683 kb on - strand at 695.683 kb on - strand at 695.751 kb on + strand at 695.751 kb on + strand at 695.751 kb on + strand at 695.751 kb on + strand at 695.751 kb on + strand at 695.752 kb on - strand at 695.752 kb on - strand at 695.752 kb on - strand at 695.767 kb on + strand at 695.767 kb on + strand at 695.768 kb on - strand at 695.768 kb on - strand at 695.768 kb on - strand at 695.778 kb on - strand at 695.778 kb on - strand at 695.792 kb on + strand at 695.792 kb on + strand at 695.793 kb on - strand at 695.793 kb on - strand at 695.845 kb on + strand at 695.846 kb on - strand at 695.874 kb on - strand at 695.875 kb on + strand at 695.875 kb on + strand at 695.875 kb on + strand at 695.875 kb on + strand at 695.876 kb on - strand at 695.886 kb on + strand at 695.886 kb on + strand at 695.887 kb on - strand at 695.887 kb on - strand at 695.888 kb on + strand at 695.889 kb on - strand at 695.889 kb on - strand at 695.897 kb on + strand at 695.897 kb on + strand at 695.898 kb on - strand at 695.898 kb on - strand at 695.907 kb on - strand at 695.912 kb on + strand at 695.913 kb on - strand at 695.913 kb on - strand at 695.913 kb on - strand at 695.914 kb on + strand at 695.915 kb on - strand at 695.915 kb on - strand at 695.915 kb on - strand at 695.915 kb on - strand at 695.915 kb on - strand at 695.916 kb on + strand at 695.916 kb on + strand at 695.916 kb on + strand at 695.916 kb on + strand at 695.917 kb on - strand at 695.917 kb on - strand at 695.917 kb on - strand at 695.917 kb on - strand at 695.917 kb on - strand at 695.918 kb on - strand at 695.929 kb on + strand at 695.929 kb on + strand at 695.929 kb on + strand at 695.930 kb on - strand at 695.930 kb on - strand at 695.960 kb on - strand at 695.962 kb on + strand at 695.962 kb on + strand at 695.962 kb on + strand at 695.962 kb on + strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.968 kb on + strand at 695.968 kb on + strand at 695.968 kb on + strand at 695.968 kb on + strand at 695.969 kb on - strand at 695.969 kb on - strand at 695.989 kb on - strand at 696.057 kb on + strand at 696.058 kb on - strand at 696.058 kb on - strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.171 kb on + strand, within IAI47_03325 at 696.172 kb on - strand, within IAI47_03325 at 696.172 kb on - strand, within IAI47_03325 at 696.236 kb on + strand, within IAI47_03325 at 696.237 kb on - strand, within IAI47_03325 at 696.369 kb on + strand, within IAI47_03325 at 696.369 kb on + strand, within IAI47_03325 at 696.369 kb on + strand, within IAI47_03325 at 696.370 kb on - strand, within IAI47_03325 at 696.370 kb on - strand, within IAI47_03325 at 696.414 kb on - strand, within IAI47_03325 at 696.414 kb on - strand, within IAI47_03325 at 696.430 kb on + strand, within IAI47_03325 at 696.431 kb on - strand, within IAI47_03325 at 696.431 kb on - strand, within IAI47_03325 at 696.578 kb on - strand, within IAI47_03325
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 694,096 + IAI47_03315 0.61 +1.1 694,096 + IAI47_03315 0.61 +0.2 694,096 + IAI47_03315 0.61 -0.3 694,096 + IAI47_03315 0.61 -0.9 694,096 + IAI47_03315 0.61 -0.9 694,096 + IAI47_03315 0.61 -0.0 694,096 + IAI47_03315 0.61 -0.9 694,096 + IAI47_03315 0.61 +0.4 694,097 - IAI47_03315 0.61 -0.1 694,097 - IAI47_03315 0.61 +1.0 694,097 - IAI47_03315 0.61 +0.7 694,097 - IAI47_03315 0.61 +0.1 694,097 - IAI47_03315 0.61 -0.3 694,097 - IAI47_03315 0.61 +0.5 694,120 - IAI47_03315 0.62 -0.3 694,147 + IAI47_03315 0.63 +0.3 694,148 - IAI47_03315 0.63 +0.3 694,192 - IAI47_03315 0.65 +1.1 694,227 + IAI47_03315 0.67 -0.3 694,336 + IAI47_03315 0.71 +0.2 694,396 + IAI47_03315 0.74 +0.7 694,396 + IAI47_03315 0.74 +0.1 694,397 - IAI47_03315 0.74 -0.2 694,397 - IAI47_03315 0.74 +0.4 694,397 - IAI47_03315 0.74 -0.3 694,397 - IAI47_03315 0.74 -1.3 694,402 + IAI47_03315 0.74 +0.7 694,403 - IAI47_03315 0.74 -0.8 694,403 - IAI47_03315 0.74 -1.2 694,403 - IAI47_03315 0.74 -0.4 694,403 - IAI47_03315 0.74 -0.7 694,486 + IAI47_03315 0.78 +0.7 694,487 - IAI47_03315 0.78 -0.3 694,487 - IAI47_03315 0.78 +1.1 694,506 + IAI47_03315 0.78 +1.0 694,506 + IAI47_03315 0.78 -0.6 694,506 + IAI47_03315 0.78 -0.2 694,506 + IAI47_03315 0.78 +0.6 694,507 - IAI47_03315 0.78 +0.4 694,507 - IAI47_03315 0.78 +0.5 694,507 - IAI47_03315 0.78 +0.1 694,507 - IAI47_03315 0.78 +0.6 694,507 - IAI47_03315 0.78 -1.2 694,507 - IAI47_03315 0.78 -0.2 694,507 - IAI47_03315 0.78 +1.7 694,507 - IAI47_03315 0.78 +0.6 694,542 - IAI47_03315 0.80 +0.9 694,542 - IAI47_03315 0.80 -0.1 694,570 + IAI47_03315 0.81 -1.2 694,570 + IAI47_03315 0.81 +1.0 694,570 + +0.7 694,570 + IAI47_03315 0.81 -0.7 694,571 - IAI47_03315 0.81 -0.5 694,571 - IAI47_03315 0.81 -0.2 694,571 - IAI47_03315 0.81 -0.2 694,571 - IAI47_03315 0.81 -1.3 694,571 - IAI47_03315 0.81 +0.5 694,597 + IAI47_03315 0.82 +0.5 694,598 - IAI47_03315 0.82 +0.5 694,598 - IAI47_03315 0.82 -1.4 694,598 - IAI47_03315 0.82 -0.9 694,598 - IAI47_03315 0.82 -0.9 694,614 + IAI47_03315 0.83 -0.6 694,615 - IAI47_03315 0.83 -0.1 694,781 + -1.4 694,781 + -0.5 694,782 - +0.4 694,782 - -0.0 694,782 - +0.1 694,853 + +1.1 694,853 + +0.5 694,946 + -0.9 694,946 + +1.0 694,946 + +1.6 694,947 - -0.5 694,947 - +1.3 694,989 + -0.2 695,025 + +1.1 695,025 + -0.5 695,025 + -0.6 695,025 + +0.3 695,026 - -0.2 695,026 - +1.3 695,026 - +0.1 695,045 + +1.6 695,045 + -1.4 695,045 + -0.3 695,046 - -0.8 695,046 - -0.4 695,046 - -1.1 695,071 + +0.5 695,071 + -1.3 695,075 + +0.6 695,075 + +0.1 695,075 + -0.7 695,075 + -1.0 695,075 + -0.4 695,075 + -0.1 695,075 + +1.0 695,075 + +0.9 695,076 - -0.3 695,076 - -0.3 695,076 - -0.1 695,076 - +0.4 695,076 - -1.2 695,076 - -0.4 695,078 + -0.4 695,119 - +0.6 695,216 + IAI47_03320 0.27 -0.7 695,216 + IAI47_03320 0.27 +0.2 695,216 + IAI47_03320 0.27 -0.4 695,216 + IAI47_03320 0.27 -0.7 695,216 + IAI47_03320 0.27 -0.1 695,216 + IAI47_03320 0.27 -2.2 695,216 + IAI47_03320 0.27 +0.1 695,216 + IAI47_03320 0.27 -0.9 695,216 + IAI47_03320 0.27 -1.4 695,217 - IAI47_03320 0.28 +2.6 695,217 - IAI47_03320 0.28 -1.1 695,217 - IAI47_03320 0.28 +0.1 695,217 - IAI47_03320 0.28 +0.9 695,217 - IAI47_03320 0.28 +0.6 695,217 - IAI47_03320 0.28 +0.3 695,217 - IAI47_03320 0.28 +3.5 695,217 - IAI47_03320 0.28 -0.2 695,238 + IAI47_03320 0.32 -0.6 695,238 + IAI47_03320 0.32 -0.0 695,238 + IAI47_03320 0.32 -0.4 695,239 - IAI47_03320 0.32 +0.5 695,239 - IAI47_03320 0.32 +0.8 695,239 - IAI47_03320 0.32 +0.1 695,243 + IAI47_03320 0.33 -0.9 695,243 + IAI47_03320 0.33 -1.4 695,244 - IAI47_03320 0.33 +0.4 695,244 - IAI47_03320 0.33 +1.6 695,244 - IAI47_03320 0.33 -0.9 695,343 + IAI47_03320 0.52 -0.7 695,370 + IAI47_03320 0.58 -1.9 695,406 - IAI47_03320 0.65 +1.1 695,406 - IAI47_03320 0.65 +0.3 695,406 - IAI47_03320 0.65 -0.9 695,514 - IAI47_03320 0.86 +0.2 695,514 - IAI47_03320 0.86 -0.4 695,554 + -0.7 695,555 - +0.2 695,597 + -0.2 695,598 - +1.1 695,609 - +0.1 695,612 + +1.3 695,612 + +1.4 695,613 - +0.6 695,620 + -2.4 695,620 + +0.2 695,620 + -0.9 695,621 - +1.1 695,621 - +0.1 695,621 - -0.4 695,621 - +0.3 695,621 - +0.5 695,634 + -0.7 695,634 + -0.5 695,635 - +0.0 695,635 - +0.5 695,635 - -1.0 695,653 + -0.4 695,654 - +0.2 695,654 - -0.7 695,677 + +0.6 695,678 - +1.4 695,683 - +0.1 695,683 - +1.1 695,683 - +0.2 695,683 - +1.5 695,751 + -0.2 695,751 + +0.4 695,751 + +0.2 695,751 + +0.1 695,751 + -2.9 695,752 - +0.4 695,752 - +0.5 695,752 - -0.4 695,767 + -0.5 695,767 + -0.0 695,768 - +0.8 695,768 - -1.2 695,768 - +0.1 695,778 - -0.8 695,778 - -0.4 695,792 + -0.8 695,792 + +0.6 695,793 - +0.3 695,793 - +0.9 695,845 + +0.6 695,846 - +1.5 695,874 - +0.1 695,875 + +1.2 695,875 + -0.9 695,875 + +0.2 695,875 + -0.2 695,876 - +0.3 695,886 + -1.1 695,886 + +0.8 695,887 - +1.7 695,887 - +0.6 695,888 + +0.2 695,889 - -0.3 695,889 - +1.7 695,897 + +0.7 695,897 + -0.2 695,898 - -0.5 695,898 - +1.7 695,907 - +2.1 695,912 + +0.7 695,913 - -0.7 695,913 - +0.4 695,913 - +1.7 695,914 + -0.7 695,915 - +0.8 695,915 - +0.1 695,915 - +1.1 695,915 - +1.1 695,915 - +1.5 695,916 + +0.7 695,916 + +1.1 695,916 + -1.3 695,916 + -0.9 695,917 - -0.9 695,917 - -0.7 695,917 - +0.7 695,917 - -0.3 695,917 - +0.0 695,918 - -1.4 695,929 + -0.9 695,929 + +0.7 695,929 + +0.7 695,930 - +1.4 695,930 - +2.3 695,960 - -0.2 695,962 + -2.7 695,962 + +0.4 695,962 + -2.2 695,962 + +0.2 695,963 - -0.3 695,963 - -0.9 695,963 - +0.4 695,963 - +0.2 695,963 - +0.3 695,963 - -0.5 695,968 + +0.2 695,968 + +0.1 695,968 + +1.0 695,968 + +0.4 695,969 - +0.2 695,969 - +1.1 695,989 - -0.3 696,057 + -0.2 696,058 - +1.8 696,058 - -0.4 696,126 + -0.1 696,126 + -0.3 696,126 + -2.2 696,126 + -0.5 696,126 + -0.2 696,126 + -0.0 696,126 + -1.2 696,127 - +0.9 696,127 - -0.3 696,127 - +0.9 696,127 - -1.0 696,127 - +0.2 696,127 - -0.3 696,127 - -0.3 696,127 - -2.3 696,171 + IAI47_03325 0.15 +0.2 696,172 - IAI47_03325 0.15 +0.7 696,172 - IAI47_03325 0.15 -1.7 696,236 + IAI47_03325 0.25 +1.0 696,237 - IAI47_03325 0.25 +1.1 696,369 + IAI47_03325 0.44 +0.8 696,369 + IAI47_03325 0.44 -0.8 696,369 + IAI47_03325 0.44 -0.6 696,370 - IAI47_03325 0.45 +0.1 696,370 - IAI47_03325 0.45 -1.2 696,414 - IAI47_03325 0.51 +0.9 696,414 - IAI47_03325 0.51 -1.1 696,430 + IAI47_03325 0.54 -0.2 696,431 - IAI47_03325 0.54 +0.1 696,431 - IAI47_03325 0.54 +0.5 696,578 - IAI47_03325 0.76 +1.2
Or see this region's nucleotide sequence