Strain Fitness in Pantoea sp. MT58 around IAI47_21290

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21285 and IAI47_21290 are separated by 240 nucleotidesIAI47_21290 and IAI47_21295 are separated by 149 nucleotidesIAI47_21295 and IAI47_21300 are separated by 103 nucleotides IAI47_21285: IAI47_21285 - amidohydrolase, at 512,775 to 513,962 _21285 IAI47_21290: IAI47_21290 - alpha/beta hydrolase, at 514,203 to 514,680 _21290 IAI47_21295: IAI47_21295 - DJ-1/PfpI family protein, at 514,830 to 515,549 _21295 IAI47_21300: IAI47_21300 - AzlD domain-containing protein, at 515,653 to 515,976 _21300 Position (kb) 514 515Strain fitness (log2 ratio) -2 -1 0 1 2 3at 513.296 kb on + strand, within IAI47_21285at 513.296 kb on + strand, within IAI47_21285at 513.296 kb on + strand, within IAI47_21285at 513.296 kb on + strand, within IAI47_21285at 513.296 kb on + strand, within IAI47_21285at 513.316 kb on - strand, within IAI47_21285at 513.357 kb on + strand, within IAI47_21285at 513.357 kb on + strand, within IAI47_21285at 513.366 kb on + strand, within IAI47_21285at 513.367 kb on - strand, within IAI47_21285at 513.367 kb on - strand, within IAI47_21285at 513.449 kb on + strand, within IAI47_21285at 513.449 kb on + strand, within IAI47_21285at 513.450 kb on - strand, within IAI47_21285at 513.450 kb on - strand, within IAI47_21285at 513.563 kb on + strand, within IAI47_21285at 513.564 kb on - strand, within IAI47_21285at 513.564 kb on - strand, within IAI47_21285at 513.585 kb on + strand, within IAI47_21285at 513.585 kb on + strand, within IAI47_21285at 513.585 kb on + strand, within IAI47_21285at 513.586 kb on - strand, within IAI47_21285at 513.586 kb on - strand, within IAI47_21285at 513.586 kb on - strand, within IAI47_21285at 513.588 kb on + strand, within IAI47_21285at 513.588 kb on + strand, within IAI47_21285at 513.588 kb on + strand, within IAI47_21285at 513.588 kb on + strand, within IAI47_21285at 513.589 kb on - strand, within IAI47_21285at 513.624 kb on - strand, within IAI47_21285at 513.624 kb on - strand, within IAI47_21285at 513.777 kb on + strand, within IAI47_21285at 513.778 kb on - strand, within IAI47_21285at 513.814 kb on + strand, within IAI47_21285at 513.815 kb on - strand, within IAI47_21285at 513.845 kb on + strandat 513.845 kb on + strandat 513.845 kb on + strandat 513.855 kb on + strandat 513.856 kb on - strandat 513.873 kb on + strandat 513.876 kb on - strandat 513.894 kb on + strandat 513.894 kb on + strandat 513.895 kb on - strandat 513.914 kb on + strandat 513.977 kb on + strandat 513.977 kb on + strandat 514.046 kb on + strandat 514.046 kb on + strandat 514.122 kb on + strandat 514.146 kb on + strandat 514.146 kb on + strandat 514.146 kb on + strandat 514.147 kb on - strandat 514.166 kb on + strandat 514.167 kb on - strandat 514.169 kb on + strandat 514.170 kb on - strandat 514.170 kb on - strandat 514.172 kb on + strandat 514.188 kb on - strandat 514.188 kb on - strandat 514.200 kb on + strandat 514.292 kb on + strand, within IAI47_21290at 514.347 kb on + strand, within IAI47_21290at 514.366 kb on - strand, within IAI47_21290at 514.366 kb on - strand, within IAI47_21290at 514.371 kb on + strand, within IAI47_21290at 514.372 kb on - strand, within IAI47_21290at 514.425 kb on + strand, within IAI47_21290at 514.529 kb on + strand, within IAI47_21290at 514.529 kb on + strand, within IAI47_21290at 514.529 kb on + strand, within IAI47_21290at 514.529 kb on + strand, within IAI47_21290at 514.530 kb on - strand, within IAI47_21290at 514.530 kb on - strand, within IAI47_21290at 514.575 kb on + strand, within IAI47_21290at 514.575 kb on + strand, within IAI47_21290at 514.576 kb on - strand, within IAI47_21290at 514.581 kb on + strand, within IAI47_21290at 514.599 kb on - strand, within IAI47_21290at 514.681 kb on + strandat 514.682 kb on - strandat 514.693 kb on + strandat 514.693 kb on + strandat 514.694 kb on - strandat 514.700 kb on - strandat 514.734 kb on - strandat 514.734 kb on - strandat 514.776 kb on - strandat 514.822 kb on + strandat 514.822 kb on + strandat 514.822 kb on + strandat 514.823 kb on - strandat 514.823 kb on - strandat 514.831 kb on + strandat 514.831 kb on + strandat 514.831 kb on + strandat 514.832 kb on - strandat 514.832 kb on - strandat 514.838 kb on + strandat 514.838 kb on + strandat 514.839 kb on - strandat 514.839 kb on - strandat 514.869 kb on + strandat 514.913 kb on + strand, within IAI47_21295at 514.913 kb on + strand, within IAI47_21295at 514.913 kb on + strand, within IAI47_21295at 514.914 kb on - strand, within IAI47_21295at 515.002 kb on + strand, within IAI47_21295at 515.002 kb on + strand, within IAI47_21295at 515.002 kb on + strand, within IAI47_21295at 515.003 kb on - strand, within IAI47_21295at 515.013 kb on + strand, within IAI47_21295at 515.014 kb on - strand, within IAI47_21295at 515.014 kb on - strand, within IAI47_21295at 515.204 kb on + strand, within IAI47_21295at 515.204 kb on + strand, within IAI47_21295at 515.205 kb on - strand, within IAI47_21295at 515.205 kb on - strand, within IAI47_21295at 515.241 kb on - strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.303 kb on + strand, within IAI47_21295at 515.304 kb on - strand, within IAI47_21295at 515.369 kb on + strand, within IAI47_21295at 515.369 kb on + strand, within IAI47_21295at 515.369 kb on + strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.392 kb on - strand, within IAI47_21295at 515.520 kb on + strandat 515.521 kb on - strandat 515.521 kb on - strandat 515.521 kb on - strandat 515.549 kb on + strandat 515.549 kb on + strandat 515.549 kb on + strandat 515.549 kb on + strandat 515.590 kb on + strandat 515.604 kb on + strandat 515.604 kb on + strandat 515.604 kb on + strandat 515.605 kb on - strandat 515.605 kb on - strandat 515.628 kb on + strandat 515.628 kb on + strandat 515.629 kb on - strandat 515.660 kb on - strandat 515.674 kb on + strandat 515.674 kb on + strandat 515.674 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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513,296 + IAI47_21285 0.44 -0.5
513,296 + IAI47_21285 0.44 +3.2
513,296 + IAI47_21285 0.44 +0.5
513,296 + IAI47_21285 0.44 +0.5
513,296 + IAI47_21285 0.44 -0.5
513,316 - IAI47_21285 0.46 -0.7
513,357 + IAI47_21285 0.49 +1.4
513,357 + IAI47_21285 0.49 +0.9
513,366 + IAI47_21285 0.50 +0.4
513,367 - IAI47_21285 0.50 +0.6
513,367 - IAI47_21285 0.50 -0.4
513,449 + IAI47_21285 0.57 -0.4
513,449 + IAI47_21285 0.57 +0.4
513,450 - IAI47_21285 0.57 +1.6
513,450 - IAI47_21285 0.57 -1.1
513,563 + IAI47_21285 0.66 -0.6
513,564 - IAI47_21285 0.66 -0.1
513,564 - IAI47_21285 0.66 +0.5
513,585 + IAI47_21285 0.68 -1.7
513,585 + IAI47_21285 0.68 +0.1
513,585 + IAI47_21285 0.68 +0.6
513,586 - IAI47_21285 0.68 +0.7
513,586 - IAI47_21285 0.68 -0.4
513,586 - IAI47_21285 0.68 -0.4
513,588 + IAI47_21285 0.68 +1.0
513,588 + IAI47_21285 0.68 +2.0
513,588 + IAI47_21285 0.68 -0.1
513,588 + IAI47_21285 0.68 -0.6
513,589 - IAI47_21285 0.69 -0.9
513,624 - IAI47_21285 0.71 +0.9
513,624 - IAI47_21285 0.71 +1.6
513,777 + IAI47_21285 0.84 +0.1
513,778 - IAI47_21285 0.84 +0.6
513,814 + IAI47_21285 0.87 +1.2
513,815 - IAI47_21285 0.88 -0.9
513,845 + +0.6
513,845 + -1.0
513,845 + +0.0
513,855 + -0.0
513,856 - -0.3
513,873 + +1.3
513,876 - -0.7
513,894 + +0.1
513,894 + -0.9
513,895 - +0.9
513,914 + +0.4
513,977 + +0.4
513,977 + +0.3
514,046 + -1.3
514,046 + -0.5
514,122 + +0.6
514,146 + +0.9
514,146 + -0.3
514,146 + -0.1
514,147 - +0.3
514,166 + -0.3
514,167 - +1.1
514,169 + -0.5
514,170 - +1.2
514,170 - -0.1
514,172 + +1.0
514,188 - +0.9
514,188 - -1.2
514,200 + -1.9
514,292 + IAI47_21290 0.19 +1.4
514,347 + IAI47_21290 0.30 +2.4
514,366 - IAI47_21290 0.34 +1.2
514,366 - IAI47_21290 0.34 -1.8
514,371 + IAI47_21290 0.35 +1.3
514,372 - IAI47_21290 0.35 +0.9
514,425 + IAI47_21290 0.46 -0.0
514,529 + IAI47_21290 0.68 +1.2
514,529 + IAI47_21290 0.68 +1.3
514,529 + IAI47_21290 0.68 -1.5
514,529 + IAI47_21290 0.68 +0.5
514,530 - IAI47_21290 0.68 -1.0
514,530 - IAI47_21290 0.68 +2.0
514,575 + IAI47_21290 0.78 -0.2
514,575 + IAI47_21290 0.78 +0.5
514,576 - IAI47_21290 0.78 +2.2
514,581 + IAI47_21290 0.79 +1.0
514,599 - IAI47_21290 0.83 +0.8
514,681 + -0.5
514,682 - -0.5
514,693 + +0.2
514,693 + +0.1
514,694 - +0.2
514,700 - +0.3
514,734 - +0.6
514,734 - +0.1
514,776 - +0.6
514,822 + -1.3
514,822 + +2.2
514,822 + +0.4
514,823 - +0.2
514,823 - +0.9
514,831 + +2.4
514,831 + +0.4
514,831 + -0.8
514,832 - -1.5
514,832 - -1.3
514,838 + -0.7
514,838 + +0.1
514,839 - +0.9
514,839 - +0.9
514,869 + -0.6
514,913 + IAI47_21295 0.12 +0.7
514,913 + IAI47_21295 0.12 +1.4
514,913 + IAI47_21295 0.12 +1.9
514,914 - IAI47_21295 0.12 +2.4
515,002 + IAI47_21295 0.24 -1.6
515,002 + IAI47_21295 0.24 -0.5
515,002 + IAI47_21295 0.24 +0.1
515,003 - IAI47_21295 0.24 +0.2
515,013 + IAI47_21295 0.25 -0.9
515,014 - IAI47_21295 0.26 +0.7
515,014 - IAI47_21295 0.26 +1.9
515,204 + IAI47_21295 0.52 -0.6
515,204 + IAI47_21295 0.52 +0.1
515,205 - IAI47_21295 0.52 -1.4
515,205 - IAI47_21295 0.52 -1.1
515,241 - IAI47_21295 0.57 -0.1
515,252 + IAI47_21295 0.59 +0.2
515,252 + IAI47_21295 0.59 +0.7
515,252 + IAI47_21295 0.59 -1.1
515,252 + IAI47_21295 0.59 -1.0
515,252 + IAI47_21295 0.59 -0.5
515,252 + IAI47_21295 0.59 -0.8
515,252 + IAI47_21295 0.59 -0.1
515,253 - IAI47_21295 0.59 -1.6
515,253 - IAI47_21295 0.59 -1.5
515,253 - IAI47_21295 0.59 +1.9
515,253 - IAI47_21295 0.59 +2.9
515,253 - IAI47_21295 0.59 -0.4
515,253 - IAI47_21295 0.59 +0.6
515,303 + IAI47_21295 0.66 -1.4
515,304 - IAI47_21295 0.66 -0.6
515,369 + IAI47_21295 0.75 -0.2
515,369 + IAI47_21295 0.75 -1.1
515,369 + IAI47_21295 0.75 +1.3
515,370 - IAI47_21295 0.75 -0.1
515,370 - IAI47_21295 0.75 -1.9
515,370 - IAI47_21295 0.75 -1.7
515,370 - IAI47_21295 0.75 -0.4
515,370 - IAI47_21295 0.75 -1.5
515,370 - IAI47_21295 0.75 +0.3
515,370 - IAI47_21295 0.75 +1.4
515,370 - IAI47_21295 0.75 +0.1
515,392 - IAI47_21295 0.78 -2.1
515,520 + -0.0
515,521 - +1.3
515,521 - +0.3
515,521 - +0.4
515,549 + +1.0
515,549 + -1.2
515,549 + -0.0
515,549 + +0.3
515,590 + -0.4
515,604 + -1.5
515,604 + -1.3
515,604 + -0.9
515,605 - +1.7
515,605 - +0.1
515,628 + -0.7
515,628 + +0.1
515,629 - -0.4
515,660 - +0.5
515,674 + -0.5
515,674 + -1.5
515,674 + -1.6

Or see this region's nucleotide sequence