Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19885 and IAI47_19890 overlap by 4 nucleotides IAI47_19890 and IAI47_19895 overlap by 4 nucleotides IAI47_19895 and IAI47_19900 are separated by 12 nucleotides IAI47_19900 and IAI47_19905 are separated by 20 nucleotides
IAI47_19885: IAI47_19885 - NAD(P)/FAD-dependent oxidoreductase, at 203,545 to 204,999
_19885
IAI47_19890: IAI47_19890 - hypothetical protein, at 204,996 to 205,478
_19890
IAI47_19895: IAI47_19895 - peroxidase-related enzyme, at 205,475 to 206,041
_19895
IAI47_19900: IAI47_19900 - amino acid ABC transporter ATP-binding protein, at 206,054 to 206,791
_19900
IAI47_19905: IAI47_19905 - transporter substrate-binding domain-containing protein, at 206,812 to 207,627
_19905
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.624 kb on + strand, within IAI47_19885 at 204.636 kb on + strand, within IAI47_19885 at 204.637 kb on - strand, within IAI47_19885 at 204.642 kb on + strand, within IAI47_19885 at 204.642 kb on + strand, within IAI47_19885 at 204.642 kb on + strand, within IAI47_19885 at 204.642 kb on + strand, within IAI47_19885 at 204.643 kb on - strand, within IAI47_19885 at 204.643 kb on - strand, within IAI47_19885 at 204.643 kb on - strand, within IAI47_19885 at 204.662 kb on - strand, within IAI47_19885 at 204.762 kb on - strand, within IAI47_19885 at 204.907 kb on + strand at 204.907 kb on + strand at 204.907 kb on + strand at 204.907 kb on + strand at 204.907 kb on + strand at 204.908 kb on - strand at 204.908 kb on - strand at 204.917 kb on + strand at 204.917 kb on + strand at 204.918 kb on - strand at 204.918 kb on - strand at 204.927 kb on + strand at 204.959 kb on + strand at 205.007 kb on + strand at 205.007 kb on + strand at 205.007 kb on + strand at 205.028 kb on - strand at 205.028 kb on - strand at 205.030 kb on + strand at 205.047 kb on + strand, within IAI47_19890 at 205.169 kb on + strand, within IAI47_19890 at 205.170 kb on - strand, within IAI47_19890 at 205.210 kb on - strand, within IAI47_19890 at 205.210 kb on - strand, within IAI47_19890 at 205.427 kb on + strand, within IAI47_19890 at 205.456 kb on + strand at 205.456 kb on + strand at 205.456 kb on + strand at 205.456 kb on + strand at 205.456 kb on + strand at 205.457 kb on - strand at 205.457 kb on - strand at 205.457 kb on - strand at 205.517 kb on + strand at 205.517 kb on + strand at 205.517 kb on + strand at 205.517 kb on + strand at 205.517 kb on + strand at 205.517 kb on + strand at 205.518 kb on - strand at 205.518 kb on - strand at 205.518 kb on - strand at 205.518 kb on - strand at 205.518 kb on - strand at 205.518 kb on - strand at 205.518 kb on - strand at 205.519 kb on + strand at 205.519 kb on + strand at 205.519 kb on + strand at 205.519 kb on + strand at 205.520 kb on - strand at 205.520 kb on - strand at 205.520 kb on - strand at 205.530 kb on + strand at 205.531 kb on - strand at 205.531 kb on - strand at 205.604 kb on + strand, within IAI47_19895 at 205.605 kb on - strand, within IAI47_19895 at 205.605 kb on - strand, within IAI47_19895 at 205.620 kb on + strand, within IAI47_19895 at 205.621 kb on - strand, within IAI47_19895 at 205.637 kb on + strand, within IAI47_19895 at 205.637 kb on + strand, within IAI47_19895 at 205.637 kb on + strand, within IAI47_19895 at 205.637 kb on + strand, within IAI47_19895 at 205.638 kb on - strand, within IAI47_19895 at 205.638 kb on - strand, within IAI47_19895 at 205.638 kb on - strand, within IAI47_19895 at 205.638 kb on - strand, within IAI47_19895 at 205.638 kb on - strand, within IAI47_19895 at 205.638 kb on - strand, within IAI47_19895 at 205.638 kb on - strand, within IAI47_19895 at 205.656 kb on + strand, within IAI47_19895 at 205.669 kb on + strand, within IAI47_19895 at 205.669 kb on + strand, within IAI47_19895 at 205.669 kb on + strand, within IAI47_19895 at 205.669 kb on + strand, within IAI47_19895 at 205.669 kb on + strand, within IAI47_19895 at 205.669 kb on + strand, within IAI47_19895 at 205.670 kb on - strand, within IAI47_19895 at 205.670 kb on - strand, within IAI47_19895 at 205.670 kb on - strand, within IAI47_19895 at 205.670 kb on - strand, within IAI47_19895 at 205.670 kb on - strand, within IAI47_19895 at 205.670 kb on - strand, within IAI47_19895 at 205.670 kb on - strand, within IAI47_19895 at 205.670 kb on - strand, within IAI47_19895 at 205.670 kb on - strand, within IAI47_19895 at 205.673 kb on + strand, within IAI47_19895 at 205.673 kb on + strand, within IAI47_19895 at 205.673 kb on + strand, within IAI47_19895 at 205.673 kb on + strand, within IAI47_19895 at 205.673 kb on + strand, within IAI47_19895 at 205.673 kb on + strand, within IAI47_19895 at 205.674 kb on - strand, within IAI47_19895 at 205.674 kb on - strand, within IAI47_19895 at 205.674 kb on - strand, within IAI47_19895 at 205.674 kb on - strand, within IAI47_19895 at 205.748 kb on + strand, within IAI47_19895 at 205.817 kb on + strand, within IAI47_19895 at 205.817 kb on + strand, within IAI47_19895 at 205.818 kb on - strand, within IAI47_19895 at 205.818 kb on - strand, within IAI47_19895 at 205.818 kb on - strand, within IAI47_19895 at 205.859 kb on - strand, within IAI47_19895 at 205.859 kb on - strand, within IAI47_19895 at 205.862 kb on + strand, within IAI47_19895 at 205.863 kb on - strand, within IAI47_19895 at 205.957 kb on + strand, within IAI47_19895 at 205.958 kb on - strand, within IAI47_19895 at 205.958 kb on - strand, within IAI47_19895 at 206.039 kb on + strand at 206.039 kb on + strand at 206.039 kb on + strand at 206.039 kb on + strand at 206.039 kb on + strand at 206.040 kb on - strand at 206.040 kb on - strand at 206.058 kb on + strand at 206.058 kb on + strand at 206.058 kb on + strand at 206.071 kb on + strand at 206.071 kb on + strand at 206.071 kb on + strand at 206.072 kb on - strand at 206.072 kb on - strand at 206.072 kb on - strand at 206.072 kb on - strand at 206.074 kb on + strand at 206.074 kb on + strand at 206.075 kb on - strand at 206.075 kb on - strand at 206.075 kb on - strand at 206.125 kb on - strand at 206.194 kb on + strand, within IAI47_19900 at 206.194 kb on + strand, within IAI47_19900 at 206.194 kb on + strand, within IAI47_19900 at 206.194 kb on + strand, within IAI47_19900 at 206.194 kb on + strand, within IAI47_19900 at 206.194 kb on + strand, within IAI47_19900 at 206.195 kb on - strand, within IAI47_19900 at 206.195 kb on - strand, within IAI47_19900 at 206.195 kb on - strand, within IAI47_19900 at 206.198 kb on + strand, within IAI47_19900 at 206.199 kb on - strand, within IAI47_19900 at 206.199 kb on - strand, within IAI47_19900 at 206.252 kb on + strand, within IAI47_19900 at 206.330 kb on - strand, within IAI47_19900 at 206.488 kb on - strand, within IAI47_19900 at 206.488 kb on - strand, within IAI47_19900 at 206.590 kb on + strand, within IAI47_19900 at 206.590 kb on + strand, within IAI47_19900 at 206.590 kb on + strand, within IAI47_19900 at 206.591 kb on - strand, within IAI47_19900 at 206.623 kb on + strand, within IAI47_19900 at 206.623 kb on + strand, within IAI47_19900 at 206.623 kb on + strand, within IAI47_19900 at 206.624 kb on - strand, within IAI47_19900 at 206.785 kb on - strand at 206.789 kb on + strand at 206.790 kb on - strand at 206.790 kb on - strand at 206.790 kb on - strand at 206.790 kb on - strand at 206.790 kb on - strand at 206.796 kb on + strand at 206.797 kb on - strand at 206.834 kb on + strand at 206.834 kb on + strand at 206.834 kb on + strand at 206.834 kb on + strand at 206.834 kb on + strand at 206.835 kb on - strand at 206.907 kb on + strand, within IAI47_19905 at 206.907 kb on + strand, within IAI47_19905 at 206.907 kb on + strand, within IAI47_19905 at 206.908 kb on - strand, within IAI47_19905 at 206.908 kb on - strand, within IAI47_19905 at 206.910 kb on + strand, within IAI47_19905 at 206.911 kb on - strand, within IAI47_19905 at 206.981 kb on - strand, within IAI47_19905 at 206.981 kb on - strand, within IAI47_19905 at 206.981 kb on - strand, within IAI47_19905 at 207.025 kb on + strand, within IAI47_19905
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 204,624 + IAI47_19885 0.74 -0.9 204,636 + IAI47_19885 0.75 +0.7 204,637 - IAI47_19885 0.75 -0.5 204,642 + IAI47_19885 0.75 -0.4 204,642 + IAI47_19885 0.75 -0.1 204,642 + IAI47_19885 0.75 -0.5 204,642 + IAI47_19885 0.75 -0.1 204,643 - IAI47_19885 0.75 -1.2 204,643 - IAI47_19885 0.75 -0.1 204,643 - IAI47_19885 0.75 -0.4 204,662 - IAI47_19885 0.77 +1.6 204,762 - IAI47_19885 0.84 +1.1 204,907 + -0.4 204,907 + -0.4 204,907 + +1.9 204,907 + -2.8 204,907 + -1.4 204,908 - +0.9 204,908 - -0.1 204,917 + -1.4 204,917 + -2.3 204,918 - +1.2 204,918 - -1.4 204,927 + -1.9 204,959 + -1.4 205,007 + -0.1 205,007 + -0.1 205,007 + +1.1 205,028 - +0.6 205,028 - +0.4 205,030 + +2.1 205,047 + IAI47_19890 0.11 -0.4 205,169 + IAI47_19890 0.36 +0.6 205,170 - IAI47_19890 0.36 +0.2 205,210 - IAI47_19890 0.44 -0.4 205,210 - IAI47_19890 0.44 +1.1 205,427 + IAI47_19890 0.89 +0.4 205,456 + +0.5 205,456 + +0.6 205,456 + -2.1 205,456 + +0.3 205,456 + -1.0 205,457 - +0.4 205,457 - +0.0 205,457 - +0.2 205,517 + +0.4 205,517 + -1.0 205,517 + +2.2 205,517 + +0.6 205,517 + -2.3 205,517 + -0.7 205,518 - +0.6 205,518 - +0.8 205,518 - +1.2 205,518 - +0.3 205,518 - -1.1 205,518 - +0.6 205,518 - -0.0 205,519 + -0.1 205,519 + +0.4 205,519 + -2.4 205,519 + -0.4 205,520 - -1.7 205,520 - -0.1 205,520 - +0.2 205,530 + -1.7 205,531 - -1.3 205,531 - -0.1 205,604 + IAI47_19895 0.23 -0.1 205,605 - IAI47_19895 0.23 +1.6 205,605 - IAI47_19895 0.23 -1.1 205,620 + IAI47_19895 0.26 -2.1 205,621 - IAI47_19895 0.26 +0.3 205,637 + IAI47_19895 0.29 -2.3 205,637 + IAI47_19895 0.29 -0.4 205,637 + IAI47_19895 0.29 -0.1 205,637 + IAI47_19895 0.29 -1.7 205,638 - IAI47_19895 0.29 +0.6 205,638 - IAI47_19895 0.29 +0.5 205,638 - IAI47_19895 0.29 +1.3 205,638 - IAI47_19895 0.29 -1.3 205,638 - IAI47_19895 0.29 -0.7 205,638 - IAI47_19895 0.29 -1.0 205,638 - IAI47_19895 0.29 +0.1 205,656 + IAI47_19895 0.32 -0.1 205,669 + IAI47_19895 0.34 -1.6 205,669 + IAI47_19895 0.34 -1.6 205,669 + IAI47_19895 0.34 +0.4 205,669 + IAI47_19895 0.34 -0.1 205,669 + IAI47_19895 0.34 -0.7 205,669 + IAI47_19895 0.34 -1.4 205,670 - IAI47_19895 0.34 +0.8 205,670 - IAI47_19895 0.34 -0.5 205,670 - IAI47_19895 0.34 -0.7 205,670 - IAI47_19895 0.34 +0.1 205,670 - IAI47_19895 0.34 +0.3 205,670 - IAI47_19895 0.34 +0.5 205,670 - IAI47_19895 0.34 -0.8 205,670 - IAI47_19895 0.34 +0.9 205,670 - IAI47_19895 0.34 -0.6 205,673 + IAI47_19895 0.35 +0.6 205,673 + IAI47_19895 0.35 -1.0 205,673 + IAI47_19895 0.35 -0.4 205,673 + IAI47_19895 0.35 -0.8 205,673 + IAI47_19895 0.35 -1.3 205,673 + IAI47_19895 0.35 -0.1 205,674 - IAI47_19895 0.35 +1.0 205,674 - IAI47_19895 0.35 -0.6 205,674 - IAI47_19895 0.35 -1.4 205,674 - IAI47_19895 0.35 -1.4 205,748 + IAI47_19895 0.48 -0.5 205,817 + IAI47_19895 0.60 +0.2 205,817 + IAI47_19895 0.60 -2.6 205,818 - IAI47_19895 0.60 -1.3 205,818 - IAI47_19895 0.60 +0.3 205,818 - IAI47_19895 0.60 -0.7 205,859 - IAI47_19895 0.68 -0.4 205,859 - IAI47_19895 0.68 -1.9 205,862 + IAI47_19895 0.68 -0.4 205,863 - IAI47_19895 0.68 -1.1 205,957 + IAI47_19895 0.85 -0.9 205,958 - IAI47_19895 0.85 -0.4 205,958 - IAI47_19895 0.85 +2.6 206,039 + -1.5 206,039 + -0.6 206,039 + -0.9 206,039 + +0.1 206,039 + -1.0 206,040 - +0.5 206,040 - +0.8 206,058 + +0.0 206,058 + +2.6 206,058 + +1.9 206,071 + -0.4 206,071 + +0.5 206,071 + -0.5 206,072 - -0.6 206,072 - -0.3 206,072 - -1.1 206,072 - -0.6 206,074 + -0.5 206,074 + -0.0 206,075 - -1.5 206,075 - +0.6 206,075 - -1.0 206,125 - +0.8 206,194 + IAI47_19900 0.19 -1.1 206,194 + IAI47_19900 0.19 +0.3 206,194 + IAI47_19900 0.19 -0.9 206,194 + IAI47_19900 0.19 -0.7 206,194 + IAI47_19900 0.19 -0.0 206,194 + IAI47_19900 0.19 +0.8 206,195 - IAI47_19900 0.19 +0.0 206,195 - IAI47_19900 0.19 +0.1 206,195 - IAI47_19900 0.19 +0.3 206,198 + IAI47_19900 0.20 +0.1 206,199 - IAI47_19900 0.20 -1.8 206,199 - IAI47_19900 0.20 +1.3 206,252 + IAI47_19900 0.27 -0.3 206,330 - IAI47_19900 0.37 +1.6 206,488 - IAI47_19900 0.59 +0.1 206,488 - IAI47_19900 0.59 +0.2 206,590 + IAI47_19900 0.73 +0.1 206,590 + IAI47_19900 0.73 -1.7 206,590 + IAI47_19900 0.73 +1.5 206,591 - IAI47_19900 0.73 +0.2 206,623 + IAI47_19900 0.77 +1.3 206,623 + IAI47_19900 0.77 +0.4 206,623 + IAI47_19900 0.77 -1.3 206,624 - IAI47_19900 0.77 -0.1 206,785 - +1.1 206,789 + +1.2 206,790 - +0.5 206,790 - -0.1 206,790 - +0.2 206,790 - +0.9 206,790 - -0.8 206,796 + +0.8 206,797 - +0.5 206,834 + -2.6 206,834 + +1.1 206,834 + -0.9 206,834 + +0.9 206,834 + -0.3 206,835 - +1.9 206,907 + IAI47_19905 0.12 -0.1 206,907 + IAI47_19905 0.12 +0.7 206,907 + IAI47_19905 0.12 +0.5 206,908 - IAI47_19905 0.12 +0.7 206,908 - IAI47_19905 0.12 +0.4 206,910 + IAI47_19905 0.12 +1.6 206,911 - IAI47_19905 0.12 -0.3 206,981 - IAI47_19905 0.21 -0.4 206,981 - IAI47_19905 0.21 -1.0 206,981 - IAI47_19905 0.21 +0.2 207,025 + IAI47_19905 0.26 -0.7
Or see this region's nucleotide sequence