Strain Fitness in Pantoea sp. MT58 around IAI47_15730

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
3,315,305	-				-0.9
3,315,305	-				+0.0
3,315,305	-				+0.0
3,315,305	-				+0.2
3,315,305	-				+0.6
3,315,307	+				+0.3
3,315,307	+				+0.0
3,315,307	+				+0.0
3,315,307	+				+0.4
3,315,307	+				-0.5
3,315,308	-				-0.6
3,315,337	-				-1.2
3,315,375	+				-0.9
3,315,375	+				-1.2
3,315,472	-				+0.8
3,315,472	-				+0.6
3,315,472	-				+0.7
3,315,529	-				-0.8
3,315,529	-				-0.9
3,315,529	-				+0.6
3,315,529	-				+0.8
3,315,532	-				+0.1
3,315,532	-				+1.0
3,315,569	-				+0.1
3,315,587	-		IAI47_15725	0.11	-0.9
3,315,638	+		IAI47_15725	0.17	-0.6
3,315,639	-		IAI47_15725	0.18	+1.4
3,315,639	-		IAI47_15725	0.18	-1.3
3,315,639	-		IAI47_15725	0.18	-1.2
3,315,643	-		IAI47_15725	0.18	+0.4
3,315,643	-		IAI47_15725	0.18	-0.5
3,315,643	-		IAI47_15725	0.18	+0.7
3,315,643	-		IAI47_15725	0.18	+0.3
3,315,643	-		IAI47_15725	0.18	-0.7
3,315,643	-		IAI47_15725	0.18	-0.6
3,315,643	-		IAI47_15725	0.18	-0.4
3,315,727	-		IAI47_15725	0.29	+0.5
3,315,727	-		IAI47_15725	0.29	-2.9
3,315,727	-		IAI47_15725	0.29	-0.6
3,315,754	-		IAI47_15725	0.33	-0.2
3,315,754	-		IAI47_15725	0.33	-0.5
3,315,754	-		IAI47_15725	0.33	-0.2
3,315,754	-				-1.4
3,315,754	-		IAI47_15725	0.33	-0.6
3,315,873	+		IAI47_15725	0.48	-0.2
3,315,874	-		IAI47_15725	0.48	+0.4
3,316,069	-		IAI47_15725	0.74	+0.0
3,316,069	-		IAI47_15725	0.74	-0.6
3,316,069	-		IAI47_15725	0.74	+1.6
3,316,087	-		IAI47_15725	0.76	-1.6
3,316,146	+		IAI47_15725	0.84	-1.7
3,316,151	-		IAI47_15725	0.84	+0.0
3,316,151	-		IAI47_15725	0.84	-2.1
3,316,151	-		IAI47_15725	0.84	+0.6
3,316,151	-		IAI47_15725	0.84	-2.2
3,316,151	-		IAI47_15725	0.84	+0.0
3,316,219	-				+0.5
3,316,233	-				+2.1
3,316,240	-				+0.8
3,316,240	-				-0.3
3,316,240	-				-1.0
3,316,270	-				+1.0
3,316,270	-				-0.4
3,316,270	-				+0.3
3,316,270	-				+0.7
3,316,270	-				-1.5
3,316,384	-		IAI47_15730	0.11	+0.8
3,316,418	+		IAI47_15730	0.14	+0.0
3,316,418	+		IAI47_15730	0.14	-1.2
3,316,418	+		IAI47_15730	0.14	+0.6
3,316,418	+		IAI47_15730	0.14	+0.4
3,316,418	+		IAI47_15730	0.14	+1.2
3,316,418	+		IAI47_15730	0.14	+2.2
3,316,418	+		IAI47_15730	0.14	+0.0
3,316,419	-		IAI47_15730	0.15	+1.6
3,316,419	-		IAI47_15730	0.15	+0.7
3,316,419	-		IAI47_15730	0.15	-0.7
3,316,460	+		IAI47_15730	0.19	+0.9
3,316,460	+		IAI47_15730	0.19	+1.0
3,316,460	+		IAI47_15730	0.19	+1.0
3,316,460	+		IAI47_15730	0.19	-0.4
3,316,460	+		IAI47_15730	0.19	+0.7
3,316,460	+		IAI47_15730	0.19	+2.2
3,316,460	+		IAI47_15730	0.19	-1.3
3,316,461	-		IAI47_15730	0.19	-0.6
3,316,461	-		IAI47_15730	0.19	+0.8
3,316,481	+		IAI47_15730	0.21	-1.5
3,316,481	+		IAI47_15730	0.21	+2.0
3,316,482	-		IAI47_15730	0.21	-1.2
3,316,482	-		IAI47_15730	0.21	+0.6
3,316,629	+		IAI47_15730	0.36	-0.5
3,316,629	+		IAI47_15730	0.36	+2.1
3,316,630	-		IAI47_15730	0.36	+0.3
3,316,700	-		IAI47_15730	0.43	+0.4
3,316,740	+		IAI47_15730	0.47	+0.4
3,316,740	+		IAI47_15730	0.47	+3.0
3,316,741	-		IAI47_15730	0.47	+1.8
3,316,741	-		IAI47_15730	0.47	+1.0
3,316,741	-		IAI47_15730	0.47	+0.8
3,316,741	-		IAI47_15730	0.47	+1.6
3,316,741	-		IAI47_15730	0.47	+1.6
3,316,741	-		IAI47_15730	0.47	-0.8
3,316,741	-		IAI47_15730	0.47	+0.1
3,316,782	+		IAI47_15730	0.52	-0.4
3,316,782	+		IAI47_15730	0.52	+2.0
3,316,790	+		IAI47_15730	0.52	+1.5
3,316,790	+		IAI47_15730	0.52	+0.9
3,316,791	-		IAI47_15730	0.52	+1.2
3,316,805	+		IAI47_15730	0.54	+2.6
3,316,842	+		IAI47_15730	0.58	+0.8
3,316,853	+		IAI47_15730	0.59	+2.1
3,316,854	-		IAI47_15730	0.59	+1.2
3,316,904	-		IAI47_15730	0.64	+1.0
3,316,948	+		IAI47_15730	0.69	+0.7
3,316,949	-		IAI47_15730	0.69	+0.1
3,316,949	-		IAI47_15730	0.69	+1.5
3,317,040	+		IAI47_15730	0.78	+0.6
3,317,040	+		IAI47_15730	0.78	+1.1
3,317,119	-		IAI47_15730	0.86	+0.8
3,317,134	-		IAI47_15730	0.87	+1.0
3,317,134	-		IAI47_15730	0.87	+1.4
3,317,134	-		IAI47_15730	0.87	+0.2
3,317,194	-				+0.1
3,317,194	-				+0.2
3,317,245	-				+0.8
3,317,250	+				-1.0
3,317,251	-				-1.7
3,317,272	+				+0.2
3,317,273	-				+0.0
3,317,273	-				+1.3
3,317,288	+				-0.4
3,317,288	+				+1.3
3,317,289	-				-0.4
3,317,289	-				-0.2
3,317,289	-				+0.0
3,317,289	-				+0.6
3,317,289	-				+0.4
3,317,296	+				+1.0
3,317,296	+				-0.6
3,317,297	-				+0.1
3,317,297	-				+0.2
3,317,341	+				-0.7
3,317,341	+				+1.8
3,317,342	-				-0.5
3,317,342	-				+0.4
3,317,354	-				+2.0
3,317,460	+		IAI47_15735	0.17	+0.9
3,317,460	+		IAI47_15735	0.17	-0.3
3,317,460	+		IAI47_15735	0.17	-0.7
3,317,460	+		IAI47_15735	0.17	-0.4
3,317,460	+		IAI47_15735	0.17	-0.4
3,317,460	+		IAI47_15735	0.17	-0.3
3,317,460	+		IAI47_15735	0.17	-0.6
3,317,461	-		IAI47_15735	0.17	+1.0
3,317,461	-		IAI47_15735	0.17	+2.0
3,317,666	-		IAI47_15735	0.33	+2.0
3,317,666	-		IAI47_15735	0.33	-2.6
3,317,708	-		IAI47_15735	0.36	-1.5
3,317,708	-		IAI47_15735	0.36	+0.6
3,317,708	-		IAI47_15735	0.36	-1.5
3,317,855	+		IAI47_15735	0.48	-1.3
3,317,856	-		IAI47_15735	0.48	+0.0
3,317,908	+		IAI47_15735	0.52	+1.3
3,317,945	+		IAI47_15735	0.55	+0.5
3,317,945	+		IAI47_15735	0.55	-1.0
3,317,946	-		IAI47_15735	0.55	-0.2
3,317,946	-		IAI47_15735	0.55	+0.0
3,317,946	-		IAI47_15735	0.55	-0.2
3,317,946	-		IAI47_15735	0.55	+0.4
3,317,946	-		IAI47_15735	0.55	+0.6
3,317,946	-		IAI47_15735	0.55	+0.4
3,317,946	-		IAI47_15735	0.55	+0.8
3,317,946	-		IAI47_15735	0.55	+1.0
3,317,946	-		IAI47_15735	0.55	-0.7
3,317,946	-		IAI47_15735	0.55	-0.1
3,317,946	-		IAI47_15735	0.55	+0.8