Strain Fitness in Pantoea sp. MT58 around IAI47_15715

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
3,312,152	+				-1.3
3,312,152	+				+2.1
3,312,152	+				-0.0
3,312,153	-				-0.2
3,312,153	-				+0.0
3,312,153	-				-0.4
3,312,205	+				+1.1
3,312,205	+				-3.0
3,312,205	+				-2.2
3,312,205	+				+0.8
3,312,205	+				-1.8
3,312,205	+				-1.9
3,312,205	+				+0.6
3,312,205	+				+0.2
3,312,206	-				+1.1
3,312,206	-				+0.4
3,312,206	-				+0.7
3,312,206	-				+0.1
3,312,206	-				-0.2
3,312,206	-				-1.1
3,312,206	-				+0.4
3,312,209	+				-1.2
3,312,209	+				+0.0
3,312,209	+				+0.0
3,312,209	+				+0.4
3,312,209	+				-1.6
3,312,209	+				-1.1
3,312,209	+				-2.0
3,312,209	+				+0.3
3,312,209	+				+1.0
3,312,209	+				+0.6
3,312,209	+				+0.0
3,312,209	+				-0.3
3,312,210	-				+0.9
3,312,210	-				-0.8
3,312,210	-				+1.0
3,312,210	-				-0.4
3,312,210	-				+1.2
3,312,210	-				+0.1
3,312,210	-				+0.5
3,312,210	-				-0.5
3,312,210	-				+0.7
3,312,210	-				+1.0
3,312,278	+				-0.6
3,312,278	+				+0.9
3,312,278	+				+0.1
3,312,279	-				+3.3
3,312,309	-				+1.2
3,312,309	-				+0.5
3,312,309	-				+1.4
3,312,309	-				+0.7
3,312,319	-				+1.3
3,312,333	-				+0.8
3,312,360	+		IAI47_15710	0.12	-0.4
3,312,361	-		IAI47_15710	0.12	+1.7
3,312,394	+		IAI47_15710	0.16	+0.4
3,312,394	+		IAI47_15710	0.16	+0.9
3,312,394	+		IAI47_15710	0.16	-0.6
3,312,394	+		IAI47_15710	0.16	-0.3
3,312,439	+		IAI47_15710	0.21	+2.3
3,312,439	+		IAI47_15710	0.21	+1.0
3,312,439	+		IAI47_15710	0.21	+1.6
3,312,440	-		IAI47_15710	0.21	+1.3
3,312,443	+		IAI47_15710	0.22	+2.3
3,312,443	+		IAI47_15710	0.22	+0.8
3,312,540	+		IAI47_15710	0.33	+0.0
3,312,540	+		IAI47_15710	0.33	-1.0
3,312,540	+		IAI47_15710	0.33	+0.8
3,312,540	+		IAI47_15710	0.33	+1.7
3,312,541	-		IAI47_15710	0.33	+0.6
3,312,568	+		IAI47_15710	0.36	-0.8
3,312,569	-		IAI47_15710	0.36	+0.7
3,312,571	+		IAI47_15710	0.36	+0.5
3,312,571	+		IAI47_15710	0.36	+0.2
3,312,571	+		IAI47_15710	0.36	+3.3
3,312,571	+		IAI47_15710	0.36	-1.3
3,312,571	+		IAI47_15710	0.36	+0.2
3,312,571	+		IAI47_15710	0.36	-0.6
3,312,571	+		IAI47_15710	0.36	-1.1
3,312,572	-		IAI47_15710	0.36	+1.6
3,312,572	-		IAI47_15710	0.36	+1.0
3,312,572	-		IAI47_15710	0.36	-1.3
3,312,572	-		IAI47_15710	0.36	+0.0
3,312,572	-		IAI47_15710	0.36	-1.3
3,312,572	-		IAI47_15710	0.36	-0.4
3,312,572	-		IAI47_15710	0.36	+1.5
3,312,597	+		IAI47_15710	0.39	+0.7
3,312,614	+		IAI47_15710	0.41	+0.8
3,312,614	+		IAI47_15710	0.41	-0.2
3,312,615	-		IAI47_15710	0.41	+0.9
3,312,615	-		IAI47_15710	0.41	+0.1
3,312,615	-		IAI47_15710	0.41	+1.4
3,312,641	+		IAI47_15710	0.44	+0.4
3,312,641	+		IAI47_15710	0.44	+1.6
3,312,642	-		IAI47_15710	0.45	+1.3
3,312,642	-		IAI47_15710	0.45	+1.0
3,312,642	-		IAI47_15710	0.45	+0.4
3,312,642	-		IAI47_15710	0.45	+0.6
3,312,659	-		IAI47_15710	0.47	+1.2
3,312,659	-		IAI47_15710	0.47	+0.4
3,312,683	-		IAI47_15710	0.49	+0.0
3,312,683	-		IAI47_15710	0.49	+0.3
3,312,733	+		IAI47_15710	0.55	+0.7
3,312,733	+		IAI47_15710	0.55	+1.2
3,312,733	+		IAI47_15710	0.55	+0.7
3,312,733	+		IAI47_15710	0.55	-0.3
3,312,766	+		IAI47_15710	0.59	+0.7
3,312,767	-		IAI47_15710	0.59	-0.6
3,312,767	-		IAI47_15710	0.59	+0.1
3,312,780	-		IAI47_15710	0.61	+0.5
3,312,890	+		IAI47_15710	0.73	+0.9
3,312,891	-		IAI47_15710	0.73	+0.8
3,312,933	-		IAI47_15710	0.78	+0.7
3,312,935	+		IAI47_15710	0.78	+0.2
3,312,935	+		IAI47_15710	0.78	+0.2
3,312,936	-		IAI47_15710	0.79	+0.1
3,312,943	+		IAI47_15710	0.79	+1.5
3,312,943	+		IAI47_15710	0.79	+0.0
3,312,944	-		IAI47_15710	0.80	+1.0
3,312,944	-		IAI47_15710	0.80	-0.8
3,312,946	+		IAI47_15710	0.80	+1.5
3,312,946	+		IAI47_15710	0.80	+0.6
3,312,947	-		IAI47_15710	0.80	+0.8
3,312,947	-		IAI47_15710	0.80	+0.5
3,312,947	-		IAI47_15710	0.80	+0.6
3,312,947	-		IAI47_15710	0.80	+1.0
3,312,970	+		IAI47_15710	0.83	+0.6
3,312,970	+		IAI47_15710	0.83	+0.4
3,313,043	+				+0.3
3,313,044	-				-0.9
3,313,046	+				+0.1
3,313,046	+				-1.0
3,313,046	+				+0.1
3,313,046	+				+0.7
3,313,047	-				+1.8
3,313,047	-				+0.3
3,313,047	-				+0.0
3,313,047	-				+1.7
3,313,088	+				-1.5
3,313,088	+				+0.4
3,313,088	+				+1.5
3,313,089	-				+2.0
3,313,089	-				+0.4
3,313,089	-				-0.2
3,313,089	-				+2.3
3,313,089	-				+0.7
3,313,132	+				-0.3
3,313,141	-				+1.3
3,313,164	+				+1.9
3,313,164	+				+1.5
3,313,164	+				+0.1
3,313,164	+				+1.0
3,313,164	+				+0.0
3,313,165	-				+2.7
3,313,178	-				+1.7
3,313,208	+				-0.4
3,313,208	+				-1.2
3,313,208	+				-0.4
3,313,208	+				+1.0
3,313,208	+				+0.1
3,313,209	-				+0.1
3,313,209	-				-0.7
3,313,209	-				+0.0
3,313,209	-				-0.1
3,313,209	-				-0.4
3,313,213	+				+0.0
3,313,250	+		IAI47_15715	0.13	+0.7
3,313,250	+		IAI47_15715	0.13	-0.1
3,313,250	+		IAI47_15715	0.13	+0.1
3,313,250	+		IAI47_15715	0.13	+0.0
3,313,250	+		IAI47_15715	0.13	+1.4
3,313,251	-		IAI47_15715	0.13	+0.6
3,313,251	-		IAI47_15715	0.13	+1.0
3,313,251	-		IAI47_15715	0.13	+0.5
3,313,251	-		IAI47_15715	0.13	+1.2
3,313,251	-		IAI47_15715	0.13	+0.6
3,313,260	-		IAI47_15715	0.14	+0.7
3,313,274	+		IAI47_15715	0.16	+1.3
3,313,274	+		IAI47_15715	0.16	+0.6
3,313,274	+		IAI47_15715	0.16	-2.3
3,313,274	+		IAI47_15715	0.16	+3.2
3,313,274	+		IAI47_15715	0.16	+0.8
3,313,274	+		IAI47_15715	0.16	+0.4
3,313,275	-		IAI47_15715	0.16	-0.7
3,313,275	-		IAI47_15715	0.16	+0.0
3,313,275	-		IAI47_15715	0.16	+1.6
3,313,275	-		IAI47_15715	0.16	+0.6
3,313,275	-		IAI47_15715	0.16	-0.8
3,313,275	-		IAI47_15715	0.16	+1.0
3,313,275	-		IAI47_15715	0.16	+1.4
3,313,275	-		IAI47_15715	0.16	+2.2
3,313,276	+		IAI47_15715	0.16	+2.1
3,313,276	+		IAI47_15715	0.16	+0.5
3,313,276	+		IAI47_15715	0.16	-0.9
3,313,276	+		IAI47_15715	0.16	+1.0
3,313,276	+		IAI47_15715	0.16	+2.1
3,313,276	+		IAI47_15715	0.16	-0.8
3,313,276	+		IAI47_15715	0.16	+1.5
3,313,277	-		IAI47_15715	0.16	-0.9
3,313,277	-		IAI47_15715	0.16	+1.0
3,313,277	-		IAI47_15715	0.16	+0.7
3,313,277	-		IAI47_15715	0.16	+2.1
3,313,277	-		IAI47_15715	0.16	+2.0
3,313,277	-		IAI47_15715	0.16	-0.3
3,313,277	-		IAI47_15715	0.16	-0.1
3,313,277	-		IAI47_15715	0.16	-1.8
3,313,322	-		IAI47_15715	0.21	-0.6
3,313,331	-		IAI47_15715	0.23	+1.6
3,313,358	+		IAI47_15715	0.26	+0.6
3,313,358	+		IAI47_15715	0.26	+1.0
3,313,359	-		IAI47_15715	0.26	+1.4
3,313,418	+		IAI47_15715	0.33	+0.9
3,313,420	+		IAI47_15715	0.34	+0.0
3,313,421	-		IAI47_15715	0.34	+0.9
3,313,421	-		IAI47_15715	0.34	+1.0
3,313,421	-		IAI47_15715	0.34	+0.7
3,313,421	-		IAI47_15715	0.34	+1.2
3,313,427	-		IAI47_15715	0.34	+2.0
3,313,427	-		IAI47_15715	0.34	+0.4
3,313,462	-		IAI47_15715	0.39	-0.9
3,313,486	+		IAI47_15715	0.42	-1.2
3,313,486	+		IAI47_15715	0.42	-1.1
3,313,486	+		IAI47_15715	0.42	+0.1
3,313,486	+		IAI47_15715	0.42	+0.8
3,313,486	+		IAI47_15715	0.42	+2.0
3,313,487	-		IAI47_15715	0.42	+0.6
3,313,487	-		IAI47_15715	0.42	+0.8
3,313,487	-		IAI47_15715	0.42	+0.4
3,313,487	-		IAI47_15715	0.42	+1.3
3,313,498	+		IAI47_15715	0.43	+1.5
3,313,498	+		IAI47_15715	0.43	+0.8
3,313,498	+		IAI47_15715	0.43	-0.4
3,313,498	+		IAI47_15715	0.43	+1.5
3,313,498	+		IAI47_15715	0.43	+1.9
3,313,498	+		IAI47_15715	0.43	+1.2
3,313,498	+		IAI47_15715	0.43	+1.2
3,313,498	+		IAI47_15715	0.43	-0.8
3,313,498	+		IAI47_15715	0.43	+0.0
3,313,498	+		IAI47_15715	0.43	+0.1
3,313,498	+		IAI47_15715	0.43	+0.2
3,313,498	+		IAI47_15715	0.43	+0.4
3,313,498	+		IAI47_15715	0.43	+0.7
3,313,498	+		IAI47_15715	0.43	+1.2
3,313,498	+		IAI47_15715	0.43	-0.4
3,313,498	+		IAI47_15715	0.43	-0.2
3,313,499	-		IAI47_15715	0.43	-0.5
3,313,499	-		IAI47_15715	0.43	+1.4
3,313,499	-		IAI47_15715	0.43	-0.5
3,313,499	-		IAI47_15715	0.43	-0.3
3,313,499	-		IAI47_15715	0.43	+0.6
3,313,499	-		IAI47_15715	0.43	+1.4
3,313,499	-		IAI47_15715	0.43	-0.3
3,313,499	-		IAI47_15715	0.43	+0.8
3,313,499	-		IAI47_15715	0.43	+1.7
3,313,499	-		IAI47_15715	0.43	+0.9
3,313,499	-		IAI47_15715	0.43	-1.2
3,313,499	-		IAI47_15715	0.43	-0.6
3,313,499	-		IAI47_15715	0.43	-0.8
3,313,499	-		IAI47_15715	0.43	-0.7
3,313,502	+		IAI47_15715	0.44	+0.6
3,313,503	-		IAI47_15715	0.44	+0.0
3,313,598	+		IAI47_15715	0.56	-0.6
3,313,598	+		IAI47_15715	0.56	-0.4
3,313,599	-		IAI47_15715	0.56	+3.0
3,313,599	-		IAI47_15715	0.56	+1.0
3,313,599	-		IAI47_15715	0.56	+1.7
3,313,599	-		IAI47_15715	0.56	-0.6
3,313,599	-		IAI47_15715	0.56	+0.2
3,313,599	-		IAI47_15715	0.56	+0.7
3,313,658	-		IAI47_15715	0.63	+0.4
3,313,733	-		IAI47_15715	0.72	+0.5
3,313,745	+		IAI47_15715	0.74	+0.6
3,313,745	+		IAI47_15715	0.74	+0.7
3,313,745	+		IAI47_15715	0.74	+0.6
3,313,745	+		IAI47_15715	0.74	+0.3
3,313,745	+		IAI47_15715	0.74	+0.4
3,313,745	+		IAI47_15715	0.74	+0.3
3,313,745	+		IAI47_15715	0.74	+0.4
3,313,745	+		IAI47_15715	0.74	+0.6
3,313,745	+		IAI47_15715	0.74	+0.0
3,313,746	-		IAI47_15715	0.74	-1.1
3,313,746	-		IAI47_15715	0.74	-0.4
3,313,746	-		IAI47_15715	0.74	+1.0
3,313,746	-		IAI47_15715	0.74	+0.7
3,313,746	-		IAI47_15715	0.74	+0.3
3,313,746	-		IAI47_15715	0.74	-0.2
3,313,746	-		IAI47_15715	0.74	-1.3
3,313,746	-		IAI47_15715	0.74	+0.7
3,313,746	-		IAI47_15715	0.74	+0.9
3,313,746	-		IAI47_15715	0.74	+0.0
3,313,746	-		IAI47_15715	0.74	+0.9
3,313,746	-		IAI47_15715	0.74	+3.3
3,313,746	-		IAI47_15715	0.74	-0.4
3,313,769	+		IAI47_15715	0.77	-1.1
3,313,769	+		IAI47_15715	0.77	+0.3
3,313,770	-		IAI47_15715	0.77	+0.4
3,313,826	+		IAI47_15715	0.84	+3.0
3,313,826	+		IAI47_15715	0.84	+0.7
3,313,826	+		IAI47_15715	0.84	+0.8
3,313,827	-		IAI47_15715	0.84	+0.1
3,313,827	-		IAI47_15715	0.84	+0.2
3,313,827	-		IAI47_15715	0.84	-0.6
3,313,834	+		IAI47_15715	0.85	+0.7
3,313,870	+		IAI47_15715	0.89	+0.7
3,313,870	+		IAI47_15715	0.89	+0.2
3,313,870	+		IAI47_15715	0.89	+0.4
3,313,870	+		IAI47_15715	0.89	+0.0
3,313,870	+		IAI47_15715	0.89	+0.3
3,313,870	+		IAI47_15715	0.89	+1.1
3,313,871	-		IAI47_15715	0.89	+0.7
3,313,871	-		IAI47_15715	0.89	+0.8
3,313,871	-		IAI47_15715	0.89	+0.7
3,313,871	-		IAI47_15715	0.89	+0.3
3,313,871	-		IAI47_15715	0.89	-0.2
3,313,871	-		IAI47_15715	0.89	+1.4
3,313,871	-		IAI47_15715	0.89	+0.9
3,313,871	-		IAI47_15715	0.89	-1.0
3,313,876	+		IAI47_15715	0.90	+2.3
3,313,876	+		IAI47_15715	0.90	+0.0
3,313,876	+		IAI47_15715	0.90	+0.0
3,313,876	+		IAI47_15715	0.90	+0.3
3,313,876	+		IAI47_15715	0.90	+0.8
3,313,876	+		IAI47_15715	0.90	-0.8
3,313,877	-				-1.5
3,313,877	-				-0.5
3,313,877	-				-0.2
3,313,877	-				-1.0
3,313,877	-				-1.2
3,313,877	-				-0.6
3,313,877	-				+0.7
3,313,879	+				+0.4
3,313,913	+				+0.0
3,313,913	+				+1.6
3,313,913	+				-0.8
3,313,913	+				-0.3
3,313,913	+				+0.0
3,313,914	-				+2.0
3,313,914	-				+0.9
3,313,916	+				-1.4
3,313,916	+				+3.2
3,313,927	+				+0.0
3,314,008	+				+0.0
3,314,008	+				+0.8
3,314,009	-				+0.6
3,314,042	-				-0.6
3,314,042	-				-0.4
3,314,042	-				-0.5
3,314,042	-				+1.7
3,314,042	-				-1.8
3,314,062	+				+0.3
3,314,084	+				+0.9
3,314,084	+				+2.0
3,314,084	+				+0.0
3,314,084	+				-1.7
3,314,085	-				+0.5
3,314,085	-				+0.2
3,314,118	+				-1.0
3,314,118	+				-1.1
3,314,118	+				-0.3
3,314,119	-				-0.6
3,314,143	+				+0.3
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