Strain Fitness in Pantoea sp. MT58 around IAI47_15375

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_15365 and IAI47_15370 are separated by 221 nucleotidesIAI47_15370 and IAI47_15375 are separated by 82 nucleotidesIAI47_15375 and IAI47_15380 are separated by 406 nucleotides IAI47_15365: IAI47_15365 - 23S ribosomal RNA, at 3,234,831 to 3,237,765 _15365 IAI47_15370: IAI47_15370 - tRNA-Glu, at 3,237,987 to 3,238,061 _15370 IAI47_15375: IAI47_15375 - 16S ribosomal RNA, at 3,238,144 to 3,239,690 _15375 IAI47_15380: IAI47_15380 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 3,240,097 to 3,240,657 _15380 Position (kb) 3238 3239 3240Strain fitness (log2 ratio) -1 0 1 2at 3239.259 kb on - strand, within IAI47_15375at 3240.017 kb on + strandat 3240.017 kb on + strandat 3240.035 kb on + strandat 3240.108 kb on + strandat 3240.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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3,239,259 - IAI47_15375 0.72 +0.0
3,240,017 + +2.6
3,240,017 + +0.6
3,240,035 + +0.4
3,240,108 + -1.5
3,240,109 - -1.0

Or see this region's nucleotide sequence