Strain Fitness in Pantoea sp. MT58 around IAI47_13870

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,933,847	-				-0.7
2,933,938	+				-0.1
2,933,954	+		IAI47_13865	0.10	-0.1
2,933,954	+		IAI47_13865	0.10	-0.7
2,933,960	+		IAI47_13865	0.12	+1.8
2,933,960	+		IAI47_13865	0.12	+0.4
2,933,960	+		IAI47_13865	0.12	+3.6
2,933,960	+		IAI47_13865	0.12	-1.1
2,933,960	+		IAI47_13865	0.12	-0.0
2,933,961	-		IAI47_13865	0.12	-0.6
2,933,961	-		IAI47_13865	0.12	+0.0
2,933,961	-		IAI47_13865	0.12	+0.0
2,933,961	-		IAI47_13865	0.12	-0.8
2,933,993	+		IAI47_13865	0.20	+0.4
2,933,993	+		IAI47_13865	0.20	-0.6
2,933,994	-		IAI47_13865	0.20	-1.1
2,933,994	-		IAI47_13865	0.20	-1.0
2,933,999	+		IAI47_13865	0.22	+0.4
2,933,999	+		IAI47_13865	0.22	+0.8
2,934,000	-		IAI47_13865	0.22	+0.3
2,934,000	-		IAI47_13865	0.22	-0.9
2,934,000	-		IAI47_13865	0.22	+0.2
2,934,047	+		IAI47_13865	0.34	-1.0
2,934,047	+		IAI47_13865	0.34	-0.3
2,934,047	+		IAI47_13865	0.34	-0.6
2,934,047	+		IAI47_13865	0.34	-1.8
2,934,047	+		IAI47_13865	0.34	+0.3
2,934,048	-		IAI47_13865	0.34	-1.1
2,934,048	-		IAI47_13865	0.34	+2.0
2,934,048	-		IAI47_13865	0.34	-0.1
2,934,148	+		IAI47_13865	0.59	+2.6
2,934,148	+		IAI47_13865	0.59	-0.0
2,934,149	-		IAI47_13865	0.60	-0.3
2,934,161	+		IAI47_13865	0.63	+0.3
2,934,193	+		IAI47_13865	0.71	+0.4
2,934,194	-		IAI47_13865	0.71	-0.9
2,934,194	-		IAI47_13865	0.71	+0.0
2,934,237	-		IAI47_13865	0.82	+1.0
2,934,237	-		IAI47_13865	0.82	+0.9
2,934,240	-		IAI47_13865	0.83	+0.2
2,934,240	-		IAI47_13865	0.83	-0.9
2,934,240	-		IAI47_13865	0.83	+0.7
2,934,246	-		IAI47_13865	0.84	+0.8
2,934,265	-		IAI47_13865	0.89	-1.3
2,934,324	-				+0.0
2,934,324	-				-0.9
2,934,352	+				+1.0
2,934,352	+				-0.7
2,934,353	-				+0.0
2,934,353	-				-0.2
2,934,353	-				+1.3
2,934,357	+				+2.0
2,934,357	+				+0.8
2,934,357	+				+0.4
2,934,358	-				-0.6
2,934,358	-				+0.0
2,934,424	+				-0.7
2,934,424	+				+0.9
2,934,433	+				+1.2
2,934,433	+				-0.3
2,934,448	-				-0.9
2,934,488	+				+0.0
2,934,502	-				+1.0
2,934,522	+				+2.4
2,934,523	-				+0.0
2,934,523	-				+0.4
2,934,523	-				-0.2
2,934,523	-				-0.8
2,934,544	+				-1.7
2,934,545	-				+0.1
2,934,566	+				-0.8
2,936,227	-				+0.0
2,936,227	-				-1.0
2,936,257	-				-1.8
2,936,265	-				-0.3
2,936,265	-				-1.2
2,936,265	-				+0.1
2,936,265	-				-1.3
2,936,265	-				-1.8
2,936,302	+				+0.4
2,936,302	+				+1.3
2,936,303	-				-0.3
2,936,303	-				-1.2
2,936,310	+				-0.8
2,936,310	+				-1.0
2,936,311	-				+0.0
2,936,379	+				+0.4
2,936,381	+				+1.0
2,936,420	+				+0.8
2,936,421	-				-0.1
2,936,421	-				-3.2
2,936,421	-				+0.1
2,936,449	+				+1.3
2,936,450	-				+2.8
2,936,591	-		IAI47_13875	0.11	-0.3
2,936,602	+		IAI47_13875	0.12	+0.5
2,936,602	+		IAI47_13875	0.12	-0.5
2,936,602	+		IAI47_13875	0.12	+0.2
2,936,603	-		IAI47_13875	0.12	+0.9
2,936,618	+		IAI47_13875	0.13	-0.4
2,936,677	+		IAI47_13875	0.15	-1.4
2,937,055	+		IAI47_13875	0.34	+1.0
2,937,055	+		IAI47_13875	0.34	+0.0
2,937,056	-		IAI47_13875	0.34	-0.4
2,937,073	+		IAI47_13875	0.35	+0.6
2,937,073	+		IAI47_13875	0.35	+1.3
2,937,073	+		IAI47_13875	0.35	+0.4
2,937,073	+		IAI47_13875	0.35	-1.1
2,937,074	-		IAI47_13875	0.35	+1.0
2,937,074	-		IAI47_13875	0.35	-0.6
2,937,074	-		IAI47_13875	0.35	-0.4
2,937,074	-		IAI47_13875	0.35	-0.4
2,937,074	-		IAI47_13875	0.35	-0.2
2,937,074	-		IAI47_13875	0.35	+0.8
2,937,092	+		IAI47_13875	0.36	-0.9
2,937,093	-		IAI47_13875	0.36	-1.0
2,937,093	-		IAI47_13875	0.36	+2.0
2,937,123	+		IAI47_13875	0.37	-0.3
2,937,170	-		IAI47_13875	0.40	-1.0
2,937,186	+		IAI47_13875	0.41	+0.2
2,937,187	-		IAI47_13875	0.41	-0.6
2,937,187	-		IAI47_13875	0.41	+1.3
2,937,187	-		IAI47_13875	0.41	+0.6