Strain Fitness in Pantoea sp. MT58 around IAI47_08555

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,809,004	+				+2.0
1,809,004	+				-0.8
1,809,004	+				+0.3
1,809,075	+		IAI47_08545	0.22	-0.7
1,809,075	+		IAI47_08545	0.22	+0.0
1,809,076	-		IAI47_08545	0.22	+0.0
1,809,076	-		IAI47_08545	0.22	-1.3
1,809,105	+		IAI47_08545	0.28	+0.5
1,809,106	-		IAI47_08545	0.28	-0.2
1,809,157	+		IAI47_08545	0.38	-0.6
1,809,157	+		IAI47_08545	0.38	+0.5
1,809,158	-		IAI47_08545	0.38	-0.3
1,809,158	-		IAI47_08545	0.38	+1.6
1,809,180	+		IAI47_08545	0.42	-0.2
1,809,180	+		IAI47_08545	0.42	-0.2
1,809,180	+		IAI47_08545	0.42	+0.3
1,809,181	-		IAI47_08545	0.42	+0.0
1,809,181	-		IAI47_08545	0.42	-1.1
1,809,181	-		IAI47_08545	0.42	+1.0
1,809,181	-		IAI47_08545	0.42	+2.1
1,809,182	+		IAI47_08545	0.42	-2.2
1,809,183	-		IAI47_08545	0.43	-0.3
1,809,183	-		IAI47_08545	0.43	+0.3
1,809,183	-		IAI47_08545	0.43	-0.7
1,809,204	+		IAI47_08545	0.46	+1.4
1,809,205	-		IAI47_08545	0.47	+0.3
1,809,225	+		IAI47_08545	0.50	+0.4
1,809,225	+		IAI47_08545	0.50	-0.1
1,809,226	-		IAI47_08545	0.51	+2.3
1,809,226	-		IAI47_08545	0.51	-0.4
1,809,226	-		IAI47_08545	0.51	+1.8
1,809,226	-		IAI47_08545	0.51	-0.5
1,809,232	-		IAI47_08545	0.52	-0.4
1,809,232	-		IAI47_08545	0.52	-1.1
1,809,258	+		IAI47_08545	0.57	+1.0
1,809,258	+		IAI47_08545	0.57	-0.8
1,809,258	+		IAI47_08545	0.57	+0.2
1,809,258	+		IAI47_08545	0.57	-0.1
1,809,258	+		IAI47_08545	0.57	+2.2
1,809,258	+		IAI47_08545	0.57	+2.0
1,809,259	-		IAI47_08545	0.57	+0.1
1,809,259	-		IAI47_08545	0.57	+0.7
1,809,259	-		IAI47_08545	0.57	-0.6
1,809,259	-		IAI47_08545	0.57	-3.2
1,809,259	-		IAI47_08545	0.57	-0.5
1,809,262	+		IAI47_08545	0.57	+0.0
1,809,262	+		IAI47_08545	0.57	+0.2
1,809,262	+		IAI47_08545	0.57	-0.1
1,809,262	+		IAI47_08545	0.57	+0.1
1,809,262	+		IAI47_08545	0.57	-1.4
1,809,262	+		IAI47_08545	0.57	+0.8
1,809,262	+		IAI47_08545	0.57	+0.5
1,809,262	+		IAI47_08545	0.57	+0.9
1,809,263	-		IAI47_08545	0.57	+0.2
1,809,263	-		IAI47_08545	0.57	+0.0
1,809,263	-		IAI47_08545	0.57	-1.0
1,809,263	-		IAI47_08545	0.57	+0.3
1,809,263	-		IAI47_08545	0.57	+0.0
1,809,263	-		IAI47_08545	0.57	+0.8
1,809,263	-		IAI47_08545	0.57	+0.3
1,809,263	-		IAI47_08545	0.57	-0.5
1,809,263	-		IAI47_08545	0.57	+1.2
1,809,263	-		IAI47_08545	0.57	-0.3
1,809,263	-		IAI47_08545	0.57	-0.3
1,809,263	-		IAI47_08545	0.57	+0.1
1,809,263	-		IAI47_08545	0.57	-1.3
1,809,263	-		IAI47_08545	0.57	+1.0
1,809,277	+		IAI47_08545	0.60	+1.5
1,809,277	+		IAI47_08545	0.60	-0.3
1,809,277	+		IAI47_08545	0.60	-1.1
1,809,277	+		IAI47_08545	0.60	+0.0
1,809,277	+		IAI47_08545	0.60	-0.1
1,809,278	-		IAI47_08545	0.60	-0.2
1,809,278	-		IAI47_08545	0.60	+0.1
1,809,278	-		IAI47_08545	0.60	+1.0
1,809,351	+		IAI47_08545	0.74	+2.0
1,809,351	+		IAI47_08545	0.74	+2.0
1,809,351	+		IAI47_08545	0.74	+0.2
1,809,351	+		IAI47_08545	0.74	+0.0
1,809,352	-		IAI47_08545	0.74	-0.1
1,809,361	+		IAI47_08545	0.76	+1.0
1,809,362	-		IAI47_08545	0.76	-2.0
1,809,384	-		IAI47_08545	0.80	+0.5
1,809,409	+		IAI47_08545	0.85	-2.1
1,809,409	+		IAI47_08545	0.85	-0.7
1,809,410	-		IAI47_08545	0.85	-1.0
1,809,410	-		IAI47_08545	0.85	-0.1
1,809,415	+		IAI47_08545	0.86	+1.0
1,809,417	+		IAI47_08545	0.86	+0.7
1,809,417	+		IAI47_08545	0.86	+1.0
1,809,418	-		IAI47_08545	0.87	-0.3
1,809,418	-		IAI47_08545	0.87	-0.4
1,809,425	-		IAI47_08545	0.88	+0.6
1,809,475	-				-2.6
1,809,478	+				-1.3
1,809,479	-				+0.3
1,809,506	+				-0.3
1,809,506	+				+0.4
1,809,506	+				+0.6
1,809,506	+				-0.8
1,809,506	+				+1.5
1,809,506	+				-0.3
1,809,507	-				+0.5
1,809,507	-				+0.3
1,809,542	-				-0.4
1,809,595	+		IAI47_08550	0.20	-1.2
1,809,595	+		IAI47_08550	0.20	+3.5
1,809,595	+		IAI47_08550	0.20	+2.8
1,809,595	+		IAI47_08550	0.20	-0.2
1,809,595	+		IAI47_08550	0.20	-0.3
1,809,595	+		IAI47_08550	0.20	-0.8
1,809,596	-		IAI47_08550	0.20	-0.3
1,809,596	-		IAI47_08550	0.20	-0.7
1,809,596	-		IAI47_08550	0.20	+1.0
1,809,596	-		IAI47_08550	0.20	+0.1
1,809,596	-		IAI47_08550	0.20	-0.9
1,809,642	-		IAI47_08550	0.31	-0.6
1,809,679	+		IAI47_08550	0.39	+0.2
1,809,689	-		IAI47_08550	0.41	-0.6
1,809,779	+		IAI47_08550	0.62	-0.5
1,809,779	+		IAI47_08550	0.62	+1.0
1,809,779	+		IAI47_08550	0.62	+0.1
1,809,779	+		IAI47_08550	0.62	+1.0
1,809,815	+		IAI47_08550	0.70	+0.7
1,809,815	+		IAI47_08550	0.70	+0.3
1,809,815	+		IAI47_08550	0.70	+0.4
1,809,815	+		IAI47_08550	0.70	+0.0
1,809,815	+		IAI47_08550	0.70	+1.4
1,809,816	-		IAI47_08550	0.70	+0.4
1,809,831	-		IAI47_08550	0.73	+1.0
1,809,989	+				-0.7
1,810,013	+				+0.1
1,810,013	+				-0.7
1,810,013	+				-0.1
1,810,013	+				-0.6
1,810,013	+				+0.3
1,810,014	-				-0.3
1,810,014	-				-0.3
1,810,028	+				-2.0
1,810,028	+				+1.9
1,810,064	+		IAI47_08555	0.16	+1.8
1,810,065	-		IAI47_08555	0.16	-1.8
1,810,065	-		IAI47_08555	0.16	+1.0
1,810,099	-		IAI47_08555	0.25	-0.6
1,810,124	+		IAI47_08555	0.31	+0.6
1,810,124	+		IAI47_08555	0.31	+0.7
1,810,151	+		IAI47_08555	0.38	+0.4
1,810,151	+		IAI47_08555	0.38	+2.6
1,810,151	+		IAI47_08555	0.38	+0.0
1,810,151	+		IAI47_08555	0.38	-0.2
1,810,151	+		IAI47_08555	0.38	-0.6
1,810,151	+		IAI47_08555	0.38	+0.1
1,810,152	-		IAI47_08555	0.38	+1.8
1,810,152	-		IAI47_08555	0.38	-2.0
1,810,152	-		IAI47_08555	0.38	-0.9
1,810,152	-		IAI47_08555	0.38	+1.3
1,810,152	-		IAI47_08555	0.38	+0.6
1,810,152	-		IAI47_08555	0.38	-0.2
1,810,152	-		IAI47_08555	0.38	+0.5
1,810,152	-		IAI47_08555	0.38	+0.3
1,810,152	-		IAI47_08555	0.38	+1.9
1,810,154	+		IAI47_08555	0.39	+0.0
1,810,154	+		IAI47_08555	0.39	+1.0
1,810,155	-		IAI47_08555	0.39	-0.4
1,810,155	-		IAI47_08555	0.39	-0.1
1,810,160	+		IAI47_08555	0.40	+0.1
1,810,161	-		IAI47_08555	0.40	+0.4
1,810,236	-		IAI47_08555	0.60	+1.1
1,810,236	-		IAI47_08555	0.60	-0.8
1,810,239	+		IAI47_08555	0.60	+1.2
1,810,239	+		IAI47_08555	0.60	+1.2
1,810,252	+		IAI47_08555	0.64	+0.1
1,810,252	+		IAI47_08555	0.64	-0.1
1,810,253	-		IAI47_08555	0.64	-1.7
1,810,258	+		IAI47_08555	0.65	+1.1
1,810,258	+		IAI47_08555	0.65	+0.4
1,810,258	+		IAI47_08555	0.65	-1.0
1,810,258	+		IAI47_08555	0.65	+0.5
1,810,258	+		IAI47_08555	0.65	+0.3
1,810,259	-		IAI47_08555	0.65	+0.5
1,810,262	+		IAI47_08555	0.66	+0.6
1,810,263	-		IAI47_08555	0.66	+0.4
1,810,263	-		IAI47_08555	0.66	-0.5
1,810,292	+		IAI47_08555	0.74	+0.3
1,810,292	+		IAI47_08555	0.74	+0.2
1,810,292	+		IAI47_08555	0.74	-0.4
1,810,292	+		IAI47_08555	0.74	+0.2
1,810,292	+		IAI47_08555	0.74	+0.0
1,810,292	+		IAI47_08555	0.74	+1.4
1,810,292	+		IAI47_08555	0.74	-1.8
1,810,292	+		IAI47_08555	0.74	-0.6
1,810,293	-		IAI47_08555	0.74	+0.7
1,810,293	-		IAI47_08555	0.74	-0.9
1,810,293	-		IAI47_08555	0.74	+0.0
1,810,293	-		IAI47_08555	0.74	-0.3
1,810,297	-		IAI47_08555	0.75	+0.2
1,810,297	-		IAI47_08555	0.75	+0.3
1,810,297	-		IAI47_08555	0.75	-0.6
1,810,319	-		IAI47_08555	0.81	-1.5
1,810,319	-		IAI47_08555	0.81	+0.1
1,810,319	-		IAI47_08555	0.81	+0.5
1,810,343	+		IAI47_08555	0.87	-1.5
1,810,344	-		IAI47_08555	0.87	-2.2
1,810,344	-		IAI47_08555	0.87	-0.4
1,810,344	-		IAI47_08555	0.87	+0.5
1,810,344	-		IAI47_08555	0.87	+0.0
1,810,384	+				-1.0
1,810,384	+				-0.9
1,810,385	-				-0.8
1,810,411	+				-0.1
1,810,413	+				+0.1
1,810,413	+				-0.6
1,810,413	+				+0.0
1,810,413	+				+0.9
1,810,414	-				-0.5
1,810,417	+				-1.6
1,810,417	+				+0.3
1,810,417	+				-0.3
1,810,417	+				-0.6
1,810,418	-				+0.2
1,810,418	-				+0.7
1,810,418	-				+1.6
1,810,418	-				-0.1
1,810,418	-				-0.8
1,810,418	-				-0.7
1,810,420	+				+0.0
1,810,421	-				-0.9
1,810,434	+				-0.6
1,810,435	-				+0.4
1,810,485	+				+0.1
1,810,485	+				+2.3
1,810,485	+				+0.2
1,810,485	+				-1.1
1,810,485	+				+0.4
1,810,485	+				+1.9
1,810,485	+				-0.6
1,810,485	+				-1.5
1,810,485	+				+0.2
1,810,485	+				-0.3
1,810,485	+				-0.6
1,810,485	+				+1.7
1,810,486	-				-0.9
1,810,486	-				+2.3
1,810,486	-				-0.1
1,810,486	-				+0.3
1,810,631	+		IAI47_08560	0.19	-0.5
1,810,631	+		IAI47_08560	0.19	+0.0
1,810,631	+		IAI47_08560	0.19	+0.6
1,810,631	+		IAI47_08560	0.19	-1.0
1,810,632	-		IAI47_08560	0.19	-2.5
1,810,632	-		IAI47_08560	0.19	-0.1
1,810,632	-		IAI47_08560	0.19	+0.8
1,810,632	-		IAI47_08560	0.19	-1.6
1,810,633	+		IAI47_08560	0.19	-1.4
1,810,633	+		IAI47_08560	0.19	+0.7
1,810,634	-		IAI47_08560	0.19	-1.4
1,810,634	-		IAI47_08560	0.19	+0.8
1,810,634	-		IAI47_08560	0.19	+0.4
1,810,634	-		IAI47_08560	0.19	+0.2
1,810,634	-		IAI47_08560	0.19	+0.3
1,810,637	+		IAI47_08560	0.20	+0.3
1,810,637	+		IAI47_08560	0.20	-0.3
1,810,638	-		IAI47_08560	0.20	+1.4
1,810,691	-		IAI47_08560	0.24	-0.2
1,810,691	-		IAI47_08560	0.24	-0.1
1,810,691	-		IAI47_08560	0.24	-0.4
1,810,691	-		IAI47_08560	0.24	+1.3
1,810,691	-		IAI47_08560	0.24	+0.5
1,810,691	-		IAI47_08560	0.24	-1.3
1,810,693	+		IAI47_08560	0.24	-0.1
1,810,693	+		IAI47_08560	0.24	-2.6
1,810,693	+		IAI47_08560	0.24	+2.0
1,810,693	+		IAI47_08560	0.24	+1.8
1,810,694	-		IAI47_08560	0.24	+0.4
1,810,694	-		IAI47_08560	0.24	+1.0
1,810,694	-		IAI47_08560	0.24	+0.6
1,810,694	-		IAI47_08560	0.24	-0.3
1,810,694	-		IAI47_08560	0.24	+0.3
1,810,694	-		IAI47_08560	0.24	+0.0
1,810,694	-		IAI47_08560	0.24	-0.6
1,810,694	-		IAI47_08560	0.24	+0.0
1,810,694	-		IAI47_08560	0.24	-0.3
1,810,694	-		IAI47_08560	0.24	+1.0
1,810,695	+		IAI47_08560	0.24	+0.4
1,810,695	+		IAI47_08560	0.24	-0.6
1,810,695	+		IAI47_08560	0.24	-0.3
1,810,695	+		IAI47_08560	0.24	+1.3
1,810,696	-		IAI47_08560	0.24	+1.3
1,810,696	-		IAI47_08560	0.24	+0.3
1,810,696	-		IAI47_08560	0.24	-0.3
1,810,729	+		IAI47_08560	0.27	-1.9
1,810,729	+		IAI47_08560	0.27	+0.4
1,810,730	-		IAI47_08560	0.27	+0.0
1,810,730	-		IAI47_08560	0.27	-1.0
1,810,735	+		IAI47_08560	0.28	-1.0
1,810,735	+		IAI47_08560	0.28	+0.4
1,810,735	+		IAI47_08560	0.28	-0.2
1,810,736	-		IAI47_08560	0.28	+1.5
1,810,766	-		IAI47_08560	0.30	-0.8
1,810,772	+		IAI47_08560	0.31	-2.2
1,810,783	-		IAI47_08560	0.32	+0.7
1,810,817	+		IAI47_08560	0.34	+0.6
1,810,857	+		IAI47_08560	0.38	-1.3
1,810,857	+		IAI47_08560	0.38	+1.3
1,810,857	+		IAI47_08560	0.38	+1.8
1,810,858	-		IAI47_08560	0.38	-1.0
1,810,858	-		IAI47_08560	0.38	-1.3
1,810,858	-		IAI47_08560	0.38	+0.0
1,810,858	-		IAI47_08560	0.38	+0.3
1,810,858	-		IAI47_08560	0.38	+1.1
1,810,858	-		IAI47_08560	0.38	+0.8
1,810,878	+		IAI47_08560	0.39	+0.0
1,810,878	+		IAI47_08560	0.39	+0.6
1,810,879	-		IAI47_08560	0.39	+0.3
1,810,879	-		IAI47_08560	0.39	-1.0
1,810,885	-		IAI47_08560	0.40	+0.5
1,810,947	+		IAI47_08560	0.45	-0.2
1,810,947	+		IAI47_08560	0.45	-0.2
1,810,948	-		IAI47_08560	0.45	+0.4
1,810,948	-		IAI47_08560	0.45	+0.2
1,810,948	-		IAI47_08560	0.45	-0.1
1,810,951	+		IAI47_08560	0.45	-1.1
1,810,951	+		IAI47_08560	0.45	-0.7
1,810,951	+		IAI47_08560	0.45	+0.2
1,810,952	-		IAI47_08560	0.45	+0.9
1,810,952	-		IAI47_08560	0.45	-2.0
1,810,952	-		IAI47_08560	0.45	+1.3
1,810,952	-		IAI47_08560	0.45	+0.1
1,811,066	+		IAI47_08560	0.55	-0.2
1,811,066	+		IAI47_08560	0.55	-0.3
1,811,081	+		IAI47_08560	0.56	+0.5
1,811,081	+		IAI47_08560	0.56	-0.3
1,811,142	+		IAI47_08560	0.61	+0.4
1,811,143	-		IAI47_08560	0.61	+0.0
1,811,143	-		IAI47_08560	0.61	-0.9
1,811,175	+		IAI47_08560	0.63	+0.7
1,811,175	+		IAI47_08560	0.63	+0.7
1,811,176	-		IAI47_08560	0.63	+0.1
1,811,176	-		IAI47_08560	0.63	+0.2
1,811,176	-		IAI47_08560	0.63	+1.0
1,811,176	-		IAI47_08560	0.63	+0.0
1,811,179	+		IAI47_08560	0.64	+1.5
1,811,179	+		IAI47_08560	0.64	+0.5
1,811,179	+		IAI47_08560	0.64	+0.3
1,811,179	+		IAI47_08560	0.64	+0.2
1,811,180	-		IAI47_08560	0.64	+1.4
1,811,180	-		IAI47_08560	0.64	-1.3
1,811,180	-		IAI47_08560	0.64	-1.6
1,811,180	-		IAI47_08560	0.64	-1.2
1,811,180	-		IAI47_08560	0.64	+0.4
1,811,180	-		IAI47_08560	0.64	-0.7
1,811,244	-		IAI47_08560	0.69	+0.4
1,811,298	+		IAI47_08560	0.73	-0.1
1,811,298	+		IAI47_08560	0.73	+2.1
1,811,298	+		IAI47_08560	0.73	+0.4
1,811,298	+		IAI47_08560	0.73	-1.0
1,811,298	+		IAI47_08560	0.73	-1.2
1,811,298	+		IAI47_08560	0.73	+0.4
1,811,298	+		IAI47_08560	0.73	-0.1
1,811,299	-		IAI47_08560	0.73	+0.5
1,811,299	-		IAI47_08560	0.73	-1.9
1,811,299	-		IAI47_08560	0.73	-0.3
1,811,299	-		IAI47_08560	0.73	+0.1
1,811,299	-		IAI47_08560	0.73	+0.0
1,811,315	-		IAI47_08560	0.75	+1.7
1,811,315	-		IAI47_08560	0.75	-0.7
1,811,315	-		IAI47_08560	0.75	+0.1
1,811,315	-		IAI47_08560	0.75	-0.3
1,811,346	+		IAI47_08560	0.77	-0.3
1,811,347	-		IAI47_08560	0.77	-1.3
1,811,347	-		IAI47_08560	0.77	-0.5
1,811,347	-		IAI47_08560	0.77	+0.3