Strain Fitness in Pantoea sp. MT58 around IAI47_08505

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,800,329	-				-1.4
1,800,332	+				+0.0
1,800,332	+				+0.0
1,800,332	+				+1.0
1,800,332	+				+1.1
1,800,332	+				-0.9
1,800,332	+				+1.8
1,800,332	+				-1.6
1,800,333	-				+0.5
1,800,333	-				+0.0
1,800,333	-				+1.2
1,800,333	-				-0.6
1,800,333	-				-0.6
1,800,333	-				+0.7
1,800,343	+				+0.4
1,800,343	+				+0.6
1,800,343	+				+0.5
1,800,344	-				-0.5
1,800,344	-				-0.1
1,800,376	+				+0.0
1,800,400	-				+1.9
1,800,437	+				+0.6
1,800,461	+				-0.4
1,800,461	+				+0.1
1,800,461	+				-0.0
1,800,461	+				-0.3
1,800,461	+				-0.9
1,800,461	+				+0.8
1,800,461	+				-0.6
1,800,461	+				+0.4
1,800,462	-				-0.2
1,800,462	-				-0.5
1,800,462	-				+0.2
1,800,462	-				-0.6
1,800,462	-				-0.2
1,800,462	-				-0.0
1,800,462	-				+1.3
1,800,467	-				-0.1
1,800,479	+				+1.3
1,800,514	+				-0.2
1,800,515	-				-0.2
1,800,526	+				+0.4
1,800,527	-				-0.6
1,800,765	+		IAI47_08500	0.34	+0.5
1,800,765	+		IAI47_08500	0.34	+0.4
1,800,765	+		IAI47_08500	0.34	-0.2
1,800,765	+		IAI47_08500	0.34	+0.0
1,800,769	+		IAI47_08500	0.35	+2.0
1,800,783	+		IAI47_08500	0.37	+0.4
1,800,818	-		IAI47_08500	0.43	+2.3
1,800,906	+		IAI47_08500	0.56	+0.3
1,800,923	+		IAI47_08500	0.59	+0.7
1,800,923	+		IAI47_08500	0.59	+1.8
1,800,924	-		IAI47_08500	0.59	+1.0
1,800,924	-		IAI47_08500	0.59	+0.3
1,800,924	-		IAI47_08500	0.59	+0.4
1,801,049	+		IAI47_08500	0.79	+0.2
1,801,049	+		IAI47_08500	0.79	-0.3
1,801,049	+		IAI47_08500	0.79	-0.2
1,801,049	+		IAI47_08500	0.79	+1.3
1,801,050	-		IAI47_08500	0.79	-0.2
1,801,050	-		IAI47_08500	0.79	-1.4
1,801,050	-		IAI47_08500	0.79	-0.7
1,801,050	-		IAI47_08500	0.79	+0.5
1,801,050	-		IAI47_08500	0.79	-0.1
1,801,050	-		IAI47_08500	0.79	+0.2
1,801,050	-		IAI47_08500	0.79	+0.7
1,801,050	-		IAI47_08500	0.79	-0.6
1,801,059	-		IAI47_08500	0.80	+1.0
1,801,059	-		IAI47_08500	0.80	-0.3
1,801,181	+				-0.8
1,801,181	+				-0.0
1,801,181	+				+1.3
1,801,181	+				-0.8
1,801,181	+				-0.3
1,801,181	+				-0.6
1,801,181	+				+1.0
1,801,181	+				-0.8
1,801,182	-				-0.1
1,801,182	-				-0.6
1,801,182	-				+0.3
1,801,182	-				-0.6
1,801,182	-				+0.2
1,801,182	-				+0.7
1,801,185	+				+0.4
1,801,185	+				+1.0
1,801,185	+				+1.3
1,801,185	+				+1.0
1,801,185	+				-0.2
1,801,186	-				+0.4
1,801,186	-				+0.0
1,801,186	-				-2.3
1,801,186	-				-0.1
1,801,213	+				+0.2
1,801,214	-				+0.6
1,801,280	+				-0.3
1,801,393	-		IAI47_08505	0.15	+0.7
1,801,444	+		IAI47_08505	0.19	+0.6
1,801,444	+		IAI47_08505	0.19	-0.8
1,801,444	+		IAI47_08505	0.19	+0.2
1,801,444	+		IAI47_08505	0.19	-0.6
1,801,444	+		IAI47_08505	0.19	+0.0
1,801,444	+		IAI47_08505	0.19	-0.4
1,801,444	+		IAI47_08505	0.19	-0.4
1,801,444	+		IAI47_08505	0.19	+0.0
1,801,445	-		IAI47_08505	0.19	-1.1
1,801,445	-		IAI47_08505	0.19	+2.7
1,801,557	+		IAI47_08505	0.29	+1.4
1,801,557	+		IAI47_08505	0.29	-0.3
1,801,557	+		IAI47_08505	0.29	-2.4
1,801,558	-		IAI47_08505	0.29	+1.3
1,801,616	-		IAI47_08505	0.34	+0.0
1,801,616	-		IAI47_08505	0.34	-0.7
1,801,632	-		IAI47_08505	0.35	+0.6
1,801,772	+		IAI47_08505	0.47	+1.4
1,801,772	+		IAI47_08505	0.47	+1.6
1,801,772	+		IAI47_08505	0.47	-0.5
1,801,773	-		IAI47_08505	0.47	+0.0
1,801,773	-		IAI47_08505	0.47	-0.7
1,801,858	+		IAI47_08505	0.54	-1.2
1,801,858	+		IAI47_08505	0.54	+2.1
1,801,858	+		IAI47_08505	0.54	-0.2
1,801,859	-		IAI47_08505	0.54	-0.2
1,801,910	+		IAI47_08505	0.59	-0.5
1,802,184	+		IAI47_08505	0.82	-0.1
1,802,219	+		IAI47_08505	0.85	-2.3
1,802,220	-		IAI47_08505	0.85	+1.3
1,802,220	-		IAI47_08505	0.85	+1.1
1,802,346	+				+0.8
1,802,346	+				+1.0
1,802,346	+				-0.8
1,802,347	-				-0.6
1,802,352	+				-0.3
1,802,352	+				-1.5
1,802,352	+				-0.7
1,802,352	+				+0.7
1,802,352	+				+0.4
1,802,352	+				+0.0
1,802,353	-				-1.4
1,802,353	-				+0.8
1,802,353	-				+1.3
1,802,353	-				-0.6
1,802,353	-				-0.6
1,802,353	-				-1.3
1,802,353	-				-0.4
1,802,353	-				-0.5
1,802,353	-				+2.3
1,802,353	-				+0.5
1,802,396	+				+0.6
1,802,396	+				-0.3
1,802,396	+				+0.0
1,802,396	+				+0.2
1,802,396	+				+0.3
1,802,397	-				-0.5
1,802,397	-				-0.6
1,802,397	-				+0.5
1,802,397	-				+2.0
1,802,397	-				+0.2
1,802,397	-				+1.0
1,802,406	+				-0.8
1,802,406	+				-2.8
1,802,406	+				+0.4
1,802,406	+				-0.4
1,802,406	+				+0.2
1,802,406	+				+0.6
1,802,407	-				+0.6
1,802,407	-				+1.3
1,802,407	-				+0.8
1,802,566	+				+0.4
1,802,566	+				+0.4
1,802,566	+				+1.0
1,802,567	-				-0.3
1,802,567	-				+2.0
1,802,635	-		IAI47_08510	0.11	+0.8
1,802,720	+		IAI47_08510	0.24	+0.7
1,802,720	+		IAI47_08510	0.24	-1.3
1,802,720	+		IAI47_08510	0.24	-1.5
1,802,720	+		IAI47_08510	0.24	+0.3
1,802,721	-		IAI47_08510	0.24	+1.3
1,802,769	+		IAI47_08510	0.32	+0.6
1,802,770	-		IAI47_08510	0.32	-0.2
1,802,770	-		IAI47_08510	0.32	+1.4
1,802,783	+		IAI47_08510	0.34	+1.0
1,802,783	+		IAI47_08510	0.34	+0.3
1,802,783	+		IAI47_08510	0.34	-0.4
1,802,784	-		IAI47_08510	0.34	+0.3
1,802,784	-		IAI47_08510	0.34	-0.1
1,802,784	-		IAI47_08510	0.34	-2.1
1,802,784	-		IAI47_08510	0.34	+0.5
1,802,784	-		IAI47_08510	0.34	-0.9
1,802,893	+		IAI47_08510	0.51	+0.7
1,802,893	+		IAI47_08510	0.51	+0.0
1,802,908	+		IAI47_08510	0.53	-1.6
1,802,960	+		IAI47_08510	0.61	-0.4
1,802,961	-		IAI47_08510	0.61	+1.0
1,803,065	+		IAI47_08510	0.77	+1.0
1,803,065	+		IAI47_08510	0.77	+0.6
1,803,066	-		IAI47_08510	0.77	+2.4
1,803,066	-		IAI47_08510	0.77	+0.0
1,803,066	-		IAI47_08510	0.77	-0.6
1,803,103	+		IAI47_08510	0.82	+1.1
1,803,104	-		IAI47_08510	0.83	-0.5
1,803,116	+		IAI47_08510	0.84	-0.6
1,803,116	+		IAI47_08510	0.84	-1.0
1,803,116	+		IAI47_08510	0.84	+0.9
1,803,117	-		IAI47_08510	0.85	+0.6
1,803,117	-		IAI47_08510	0.85	+0.6
1,803,215	+				+0.6
1,803,215	+				-0.9
1,803,215	+				-0.4
1,803,216	-				+0.6
1,803,216	-				-1.3
1,803,278	+				+0.5
1,803,278	+				+0.2
1,803,278	+				+0.0
1,803,279	-				+0.0
1,803,279	-				+0.8
1,803,279	-				+4.3
1,803,279	-				+1.9
1,803,279	-				-1.8
1,803,279	-				+3.1
1,803,279	-				-1.4
1,803,306	+				-0.8
1,803,306	+				+0.2
1,803,312	+				-0.0
1,803,313	-				-0.2
1,803,322	+				-0.2
1,803,322	+				+2.2
1,803,323	-				+0.7
1,803,323	-				+0.7
1,803,323	-				+1.6
1,803,369	-				-2.3