Strain Fitness in Pantoea sp. MT58 around IAI47_08135

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,714,221	+		IAI47_08125	0.65	-0.0
1,714,258	+		IAI47_08125	0.67	-0.7
1,714,258	+		IAI47_08125	0.67	+0.9
1,714,258	+		IAI47_08125	0.67	-0.0
1,714,258	+		IAI47_08125	0.67	+0.4
1,714,258	+		IAI47_08125	0.67	-0.2
1,714,266	+		IAI47_08125	0.68	+0.1
1,714,293	+		IAI47_08125	0.69	-2.3
1,714,293	+		IAI47_08125	0.69	-1.7
1,714,293	+		IAI47_08125	0.69	+0.8
1,714,294	-		IAI47_08125	0.69	-0.2
1,714,294	-		IAI47_08125	0.69	+1.0
1,714,299	-		IAI47_08125	0.70	-0.4
1,714,396	-		IAI47_08125	0.76	-0.1
1,714,456	+		IAI47_08125	0.80	-1.0
1,714,457	-		IAI47_08125	0.80	-1.3
1,714,498	+		IAI47_08125	0.83	-1.7
1,714,499	-		IAI47_08125	0.83	-0.2
1,714,499	-		IAI47_08125	0.83	+0.4
1,714,517	+		IAI47_08125	0.84	-0.4
1,714,517	+		IAI47_08125	0.84	+0.4
1,714,571	+		IAI47_08125	0.88	-0.8
1,714,613	+				-1.6
1,714,613	+				-0.5
1,714,614	-				+0.5
1,714,624	+				+0.4
1,714,635	+				-0.8
1,714,635	+				+0.2
1,714,635	+				-1.1
1,714,636	-				-0.0
1,714,636	-				-1.3
1,714,636	-				+1.0
1,714,709	+				-0.0
1,714,710	-				+0.5
1,714,710	-				+0.7
1,714,710	-				+1.1
1,714,726	+				-0.6
1,714,727	-				+1.5
1,714,729	+				+1.0
1,714,729	+				+1.0
1,714,729	+				+0.1
1,714,729	+				+0.3
1,714,730	-				+0.5
1,714,730	-				+1.4
1,714,748	+				+0.2
1,714,748	+				+0.6
1,714,748	+				-0.6
1,714,748	+				-0.1
1,714,748	+				-0.0
1,714,749	-				+1.0
1,714,749	-				-0.2
1,714,749	-				-1.0
1,714,749	-				+0.1
1,714,749	-				+0.1
1,714,749	-				-2.4
1,714,779	+				+0.4
1,714,780	-				-0.4
1,714,786	+				+0.5
1,714,878	+				-1.2
1,714,879	-				+0.7
1,714,879	-				+0.1
1,714,879	-				+0.2
1,714,879	-				-1.5
1,714,892	+		IAI47_08130	0.12	-0.3
1,714,892	+		IAI47_08130	0.12	+1.3
1,714,892	+		IAI47_08130	0.12	-0.3
1,714,893	-		IAI47_08130	0.12	+1.3
1,714,893	-		IAI47_08130	0.12	-1.0
1,714,897	+		IAI47_08130	0.13	-0.3
1,715,022	+		IAI47_08130	0.48	+0.9
1,715,022	+		IAI47_08130	0.48	-0.4
1,715,023	-		IAI47_08130	0.48	-0.6
1,715,073	+		IAI47_08130	0.61	+0.1
1,715,073	+		IAI47_08130	0.61	+0.0
1,715,074	-		IAI47_08130	0.62	-1.0
1,715,095	+		IAI47_08130	0.67	-1.0
1,715,095	+		IAI47_08130	0.67	-0.5
1,715,095	+		IAI47_08130	0.67	-0.1
1,715,095	+		IAI47_08130	0.67	+1.1
1,715,095	+		IAI47_08130	0.67	+1.2
1,715,095	+		IAI47_08130	0.67	+1.6
1,715,096	-		IAI47_08130	0.68	-0.6
1,715,096	-		IAI47_08130	0.68	-0.2
1,715,096	-		IAI47_08130	0.68	+1.3
1,715,096	-		IAI47_08130	0.68	-0.3
1,715,096	-		IAI47_08130	0.68	-1.3
1,715,096	-		IAI47_08130	0.68	-0.0
1,715,096	-		IAI47_08130	0.68	-0.5
1,715,096	-		IAI47_08130	0.68	+2.2
1,715,096	-		IAI47_08130	0.68	-0.4
1,715,172	+		IAI47_08130	0.89	+0.4
1,715,173	-		IAI47_08130	0.89	+1.0
1,715,173	-		IAI47_08130	0.89	-0.4
1,715,173	-		IAI47_08130	0.89	-0.3
1,715,173	-		IAI47_08130	0.89	-0.6
1,715,182	+				+0.1
1,715,215	-				+0.5
1,715,236	+				+1.0
1,715,237	-				+1.9
1,715,237	-				+0.3
1,715,269	+		IAI47_08135	0.14	+1.0
1,715,314	+		IAI47_08135	0.25	+0.2
1,715,314	+		IAI47_08135	0.25	-0.2
1,715,314	+		IAI47_08135	0.25	-0.7
1,715,314	+		IAI47_08135	0.25	-0.9
1,715,314	+		IAI47_08135	0.25	+0.9
1,715,314	+		IAI47_08135	0.25	+1.0
1,715,314	+		IAI47_08135	0.25	+0.4
1,715,314	+		IAI47_08135	0.25	+0.4
1,715,314	+		IAI47_08135	0.25	-1.8
1,715,315	-		IAI47_08135	0.25	-0.3
1,715,315	-		IAI47_08135	0.25	+0.7
1,715,315	-		IAI47_08135	0.25	+0.1
1,715,315	-		IAI47_08135	0.25	+0.7
1,715,315	-		IAI47_08135	0.25	-1.6
1,715,315	-		IAI47_08135	0.25	+1.0
1,715,315	-		IAI47_08135	0.25	-0.1
1,715,315	-		IAI47_08135	0.25	+0.7
1,715,315	-		IAI47_08135	0.25	+2.2
1,715,347	+		IAI47_08135	0.33	+1.0
1,715,347	+		IAI47_08135	0.33	-0.8
1,715,347	+		IAI47_08135	0.33	+2.1
1,715,347	+		IAI47_08135	0.33	-0.6
1,715,347	+		IAI47_08135	0.33	-0.0
1,715,347	+		IAI47_08135	0.33	+1.0
1,715,348	-		IAI47_08135	0.33	+0.5
1,715,348	-		IAI47_08135	0.33	-1.3
1,715,348	-		IAI47_08135	0.33	+0.6
1,715,348	-		IAI47_08135	0.33	+0.3
1,715,348	-		IAI47_08135	0.33	-1.0
1,715,348	-		IAI47_08135	0.33	+0.5
1,715,349	+		IAI47_08135	0.33	+0.2
1,715,349	+		IAI47_08135	0.33	-0.0
1,715,349	+		IAI47_08135	0.33	-0.2
1,715,349	+		IAI47_08135	0.33	-2.2
1,715,349	+		IAI47_08135	0.33	+0.0
1,715,349	+		IAI47_08135	0.33	-0.8
1,715,349	+		IAI47_08135	0.33	+0.5
1,715,349	+		IAI47_08135	0.33	-0.8
1,715,349	+		IAI47_08135	0.33	+1.2
1,715,349	+		IAI47_08135	0.33	-1.3
1,715,349	+		IAI47_08135	0.33	-0.3
1,715,349	-		IAI47_08135	0.33	+1.0
1,715,350	-		IAI47_08135	0.34	+0.6
1,715,350	-		IAI47_08135	0.34	+1.2
1,715,350	-		IAI47_08135	0.34	-1.6
1,715,350	-		IAI47_08135	0.34	-0.0
1,715,350	-		IAI47_08135	0.34	-0.4
1,715,350	-		IAI47_08135	0.34	-1.0
1,715,350	-		IAI47_08135	0.34	-0.2
1,715,350	-		IAI47_08135	0.34	+1.0
1,715,350	-		IAI47_08135	0.34	+0.8
1,715,350	-		IAI47_08135	0.34	+0.7
1,715,355	+		IAI47_08135	0.35	+0.4
1,715,431	+		IAI47_08135	0.53	+0.6
1,715,431	+		IAI47_08135	0.53	+0.7
1,715,431	+		IAI47_08135	0.53	+0.3
1,715,431	+		IAI47_08135	0.53	+0.1
1,715,432	-		IAI47_08135	0.54	+0.3
1,715,432	-		IAI47_08135	0.54	-1.5
1,715,432	-		IAI47_08135	0.54	+0.5
1,715,432	-		IAI47_08135	0.54	+0.5
1,715,470	+		IAI47_08135	0.63	+0.6
1,715,470	+		IAI47_08135	0.63	-1.3
1,715,470	+		IAI47_08135	0.63	-0.0
1,715,471	-		IAI47_08135	0.63	+0.6
1,715,471	-		IAI47_08135	0.63	-1.0
1,715,504	+		IAI47_08135	0.71	-0.3
1,715,504	+		IAI47_08135	0.71	+0.7
1,715,504	+		IAI47_08135	0.71	+1.0
1,715,504	+		IAI47_08135	0.71	+1.1
1,715,592	+				+1.4
1,715,593	-				+2.0
1,715,593	-				+0.5
1,715,616	+				+0.1
1,715,616	+				-0.4
1,715,616	+				-0.1
1,715,616	+				-0.0
1,715,616	+				+0.2
1,715,616	+				-1.3
1,715,616	+				-0.2
1,715,616	+				+0.2
1,715,617	-				+0.7
1,715,617	-				-1.1
1,715,617	-				+0.6
1,715,617	-				+0.6
1,715,617	-				+0.5
1,715,675	+				-0.5
1,715,675	+				+2.1
1,715,675	+				-1.3
1,715,675	+				-0.5
1,715,675	+				+1.0
1,715,676	-				+0.1
1,715,676	-				+0.1
1,715,676	-				+0.2
1,715,676	-				-0.3
1,715,679	+				-0.0
1,715,680	-				+0.6
1,715,680	-				-0.0
1,715,680	-				+0.1
1,715,680	-				+0.6
1,715,680	-				+0.2
1,715,680	-				-1.2
1,715,680	-				-1.2
1,715,680	-				-1.8
1,715,680	-				-0.0
1,715,680	-				+0.1
1,715,680	-				-0.1
1,715,680	-				+0.7
1,715,691	+				+1.0
1,715,691	+				+1.7
1,715,692	-				+0.1
1,715,692	-				-0.1
1,715,734	-				+1.0
1,715,735	+				+0.6
1,715,736	-				+1.4
1,715,743	+				-0.2
1,715,743	+				+1.0
1,715,743	+				-0.6
1,715,743	+				-1.4
1,715,744	-				+0.5
1,715,744	-				-0.8
1,715,744	-				-0.0
1,715,744	-				-0.8
1,715,745	+				+0.1
1,715,745	+				-1.2
1,715,746	-				+0.1
1,715,746	-				+0.1
1,715,746	-				+0.3
1,715,746	-				-1.8
1,715,746	-				-0.2
1,715,775	+		IAI47_08140	0.10	+1.5
1,715,777	+		IAI47_08140	0.10	-0.9
1,715,777	+		IAI47_08140	0.10	-0.3
1,715,777	+		IAI47_08140	0.10	-0.6
1,715,777	+		IAI47_08140	0.10	+0.5
1,715,777	+		IAI47_08140	0.10	+2.1
1,715,778	-		IAI47_08140	0.10	+1.0
1,715,778	-		IAI47_08140	0.10	+0.4
1,715,778	-		IAI47_08140	0.10	+0.2
1,715,836	-		IAI47_08140	0.14	+0.9
1,715,883	+		IAI47_08140	0.18	-0.4
1,715,883	+		IAI47_08140	0.18	+0.4
1,715,884	-		IAI47_08140	0.18	+0.5
1,715,884	-		IAI47_08140	0.18	+1.0
1,715,886	+		IAI47_08140	0.18	+0.8
1,715,886	+		IAI47_08140	0.18	+1.0
1,715,886	+		IAI47_08140	0.18	+1.0
1,715,886	+		IAI47_08140	0.18	+0.1
1,715,886	+		IAI47_08140	0.18	+0.3
1,715,887	-		IAI47_08140	0.18	-0.4
1,715,887	-		IAI47_08140	0.18	+0.2
1,715,887	-		IAI47_08140	0.18	-0.1
1,715,887	-		IAI47_08140	0.18	+1.0
1,715,887	-		IAI47_08140	0.18	-0.0
1,715,887	-		IAI47_08140	0.18	-0.0
1,715,887	-		IAI47_08140	0.18	+0.7
1,715,887	-		IAI47_08140	0.18	-0.6
1,715,887	-		IAI47_08140	0.18	-2.3
1,715,887	-		IAI47_08140	0.18	-0.1
1,716,027	+		IAI47_08140	0.28	-0.0
1,716,028	-		IAI47_08140	0.28	-0.8
1,716,028	-		IAI47_08140	0.28	+0.4
1,716,028	-		IAI47_08140	0.28	+1.0
1,716,029	+		IAI47_08140	0.28	-0.2
1,716,029	+		IAI47_08140	0.28	-1.3
1,716,029	+		IAI47_08140	0.28	+0.2
1,716,030	-		IAI47_08140	0.28	+0.3
1,716,030	-		IAI47_08140	0.28	-1.5
1,716,030	-		IAI47_08140	0.28	+0.4
1,716,093	+		IAI47_08140	0.33	-0.2
1,716,093	+		IAI47_08140	0.33	-0.5
1,716,094	-		IAI47_08140	0.33	+0.5
1,716,094	-		IAI47_08140	0.33	+1.1
1,716,094	-		IAI47_08140	0.33	+1.6
1,716,094	-		IAI47_08140	0.33	+2.1
1,716,094	-		IAI47_08140	0.33	-0.4
1,716,094	-		IAI47_08140	0.33	+1.2
1,716,094	-		IAI47_08140	0.33	+0.3
1,716,117	+		IAI47_08140	0.34	-1.2
1,716,117	+		IAI47_08140	0.34	+0.2
1,716,117	+		IAI47_08140	0.34	+0.6
1,716,118	-		IAI47_08140	0.34	+1.2
1,716,118	-		IAI47_08140	0.34	-0.2
1,716,141	+		IAI47_08140	0.36	-0.0
1,716,142	-		IAI47_08140	0.36	+0.2
1,716,156	+		IAI47_08140	0.37	-0.2
1,716,157	-		IAI47_08140	0.37	-0.8
1,716,157	-		IAI47_08140	0.37	+0.4
1,716,157	-		IAI47_08140	0.37	+1.0
1,716,158	+		IAI47_08140	0.37	-1.6
1,716,158	+		IAI47_08140	0.37	+1.0
1,716,158	+		IAI47_08140	0.37	-0.2
1,716,158	+		IAI47_08140	0.37	+0.3
1,716,158	+		IAI47_08140	0.37	-0.0
1,716,159	-		IAI47_08140	0.37	+0.4
1,716,171	+		IAI47_08140	0.38	+1.3
1,716,172	-		IAI47_08140	0.38	+0.7
1,716,172	-		IAI47_08140	0.38	+0.6
1,716,174	+		IAI47_08140	0.38	-2.8
1,716,174	+		IAI47_08140	0.38	+1.6
1,716,174	+		IAI47_08140	0.38	+1.7
1,716,175	-		IAI47_08140	0.38	+0.9
1,716,181	-		IAI47_08140	0.39	-0.7
1,716,195	+		IAI47_08140	0.40	-0.4
1,716,196	-		IAI47_08140	0.40	+0.4
1,716,196	-		IAI47_08140	0.40	-0.2
1,716,196	-		IAI47_08140	0.40	-0.3
1,716,197	+		IAI47_08140	0.40	-1.2
1,716,198	-		IAI47_08140	0.40	+0.9
1,716,198	-		IAI47_08140	0.40	-1.5
1,716,198	-		IAI47_08140	0.40	+0.9
1,716,198	-		IAI47_08140	0.40	-0.6
1,716,198	-		IAI47_08140	0.40	+1.6
1,716,198	-		IAI47_08140	0.40	+1.5
1,716,204	+		IAI47_08140	0.40	+0.8
1,716,204	+		IAI47_08140	0.40	-0.2
1,716,240	+		IAI47_08140	0.43	-0.6
1,716,241	-		IAI47_08140	0.43	+0.5
1,716,292	+		IAI47_08140	0.47	-0.0
1,716,293	-		IAI47_08140	0.47	+0.7
1,716,297	+		IAI47_08140	0.47	-2.0
1,716,298	-		IAI47_08140	0.47	+0.8
1,716,298	-		IAI47_08140	0.47	-0.3
1,716,298	-		IAI47_08140	0.47	+1.4
1,716,298	-		IAI47_08140	0.47	+1.0
1,716,382	-		IAI47_08140	0.53	-0.0
1,716,427	+		IAI47_08140	0.56	+1.7
1,716,428	-		IAI47_08140	0.56	+1.3
1,716,447	+		IAI47_08140	0.58	-1.0
1,716,495	+		IAI47_08140	0.61	+1.0
1,716,540	+		IAI47_08140	0.64	+0.2
1,716,540	+		IAI47_08140	0.64	-2.3
1,716,541	-		IAI47_08140	0.64	-0.3
1,716,543	+		IAI47_08140	0.64	-0.9
1,716,543	+		IAI47_08140	0.64	+2.1
1,716,544	-		IAI47_08140	0.64	+2.4
1,716,544	-		IAI47_08140	0.64	-0.6
1,716,544	-		IAI47_08140	0.64	+1.5
1,716,544	-		IAI47_08140	0.64	+0.7
1,716,553	-		IAI47_08140	0.65	-1.6
1,716,576	+		IAI47_08140	0.67	-0.6
1,716,577	-		IAI47_08140	0.67	-0.6
1,716,577	-		IAI47_08140	0.67	-0.4